Dstu003106.1
Basic Information
- Insect
- Drosophila sturtevanti
- Gene Symbol
- -
- Assembly
- GCA_018150375.1
- Location
- JAECWJ010000678.1:5726830-5731074[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.9e-05 0.0063 16.8 0.2 1 23 173 196 173 196 0.96 2 13 0.0014 0.096 13.1 2.9 2 23 245 267 241 267 0.89 3 13 0.0074 0.52 10.8 0.8 1 23 373 396 373 396 0.93 4 13 0.058 4.1 8.0 6.4 2 23 445 466 444 467 0.94 5 13 0.00057 0.04 14.3 1.1 1 23 525 548 525 548 0.88 6 13 7.1 5e+02 1.4 0.0 2 13 567 578 566 583 0.81 7 13 0.00079 0.056 13.8 3.5 2 23 599 621 599 621 0.96 8 13 0.012 0.85 10.1 0.1 1 23 703 726 703 726 0.96 9 13 0.00072 0.05 14.0 0.3 1 23 782 805 782 805 0.93 10 13 0.0011 0.077 13.4 2.2 2 23 855 877 854 877 0.97 11 13 0.018 1.2 9.6 1.8 1 23 967 990 967 990 0.91 12 13 0.05 3.5 8.2 1.5 1 21 1042 1062 1042 1063 0.95 13 13 7.1 5e+02 1.4 0.6 1 12 1151 1162 1151 1175 0.66
Sequence Information
- Coding Sequence
- ATGGAAGGCATGGACCTGTGGACGTCAATGTTCTCTAATGATTTTGAGGAGGGGGAGGAGGGTGAGGAAAGCGAACAATATGTCAATGGTACGGGAACGGGTGGCGATGACAAGCCACCGGCGGACACAGACGACACTATCGCTGAGGGCTATGATGACGATGATGATGCTGCTGATGAGGAACTTATGGAAATGGATGATAATGGAGATGATGGTGTCGAAACCGAAAAATCTGGCAAAAAAAAGGGACCTGAACCTGATGATGATGCCATATTTGATTTCGAATTGGAACCGATAGTTAGCTTCGCCGATCCACCATCAACGCCTTTGGCCCCGGCCGGCCCAACTGCACCTCCAGTTCGTCCCATGCAGCGACATTCATTGCCCGCCGGCGGCTCTATATTGGGCCGACCCAAAGAAATACGTTTATCCGGCGTCCAGATGCGTGCAACCACCTCACAAATCAATGCCACCGATGAGCATGGTGTGCCCATTAACTACGAGCTGGGTGTAATTTATATATGCCCCGCCTGCGGTTCGGAATTTCGACAACAGGACCAATGGAAGCGTCACATGAATCAAATGCATCAGTTCAACACACGACGGGGTCTCAACTTCGTGGGCATGGATAAATTATACCAGCGCTGTTTGGAGTGCAATAAACGCATTGCCATGCACAGCCGTGAGAATCTCCTAAAGCACAAGTTTACCCATCTGCCATATCGGTGCACAAAGTGCTACATATGCAAAAGGGAATACAAATATAGGCAAGATTTAATGGTTCATCTCCGAATGGTCCATTGCGAGGAGATTGTAAACATGATGCGAGGCGGTTACTCTTCGGCAGGGCGGAAAACCCGTGTCCGTGAGCCACGCACTGAGCAAATGTATCGTAAGGAGTTCTGTCCGGATGATGACGATGATAATATTGAAGTAAGAAACGAAGTGCTGGAACCTGATATCGATGATGCCAGTTTTGGTGTGACATCCACCTCATTTATGGATGATGAGCAGACACAGAATACAACGCCACATACAGTGTCAGGCAAGCGTAAGCGTAGTAATCCAATTGGAAGTAATGGAGGCGCTACTGAACTCTGTGAAGATTATATACATTATATGTGTCCAGATTGTGGAACGGAATGCGATAATCATGCCCAATGGAGCCAGCATATTGAGTTTGTTCATGATTACGTGAGTCGTCGGGGCCTGAACTTTAGAAGTGTGGACATGCAGATGCAATGTTTGGAATGTAAACAGATTGTTACACCCAATACAATTAAGACGTTGAGAGCTCACAAATTTAGCCATCTTCCGCAACCCGAATGGTTGCGTTGTAAGCTGTGCTACAAGAGCTACACGGAACACCATGAGTTGGTCTCTCATTTGTTAAAGCATCACAATTTGGAGACATTAATACCAGAAGGTGATGAACAGTTGACAAATTCTGCCGGAGATGACGACGATGGCAATACTACTAGCATTGGAAACGATATCTATGATGATAGCGATGATGTTCGTAAACGGGGTGGTCGGATAAGCAACGATGATATGTATGAGCCGCACATTGATTATCTTTGTCCGCAGTGCGGCAAAGAGTTTAAGGAAAAGAAACATTGGCGTACCCATGTTGTACAAGTCCATGGCATGAATGATATTGTTAAGTTAAATTTTGAGATTATATCTGATCGGCAGCTAAAATGCACAGAGTGTGAGAAGATCATTACGAATGCATATGGCATACAGAATGCCCAGCAGCACAGAATAACACATTTACCATTCAAGGCGTATGCCAGATGCCGCAAGTGCCACAAGACGTATACGGATCGTAAGGGCCTGGTTAAGCATTTGGCCACTTATCATCGTGTTGGCTGGGAAAATTGTAAATCGGATTCCATCTGTGATGGAGGACCAGGCCAATTACCGATAAAACAGCCACGTAAACAAATTGTTACCGTGGCCAATGAAACATATGAGATTATTTATCTGGATGAGGAGCCGAGCAATGTTGAGGAGAATGATTTTGGTGAGCAAATGCAAGCAGATGATGATGAATATGTGCCTCCACCATCTCTTCCTGTTCCTTCTGCTGCTACCAGCAGCCGGTACAAGTGTGTGGATTGTGGTTCGCTGTATGGGACTCAAGTTGCCCTTAAAATGCATATTAAAGAGGAGCATAGCTTAAGGGAAACCAAACATCCAGCCAAAAAGTACGGCATCGCTCAGCCAACGGAAGAGAGCAAAAAGACTCCATCAGCAATGGCATCAACAGCTGCATCTTCTTCCTCTACACCAACCACTTCCATGCGGTCTACAGGTACGACAATTGAGCAAAATTATATATTCCTTTGCCCCTCTTGCGGTGAGGAGTACAAAACCCAATTCGAATGGCGTCGCCATATCAACGAATCCCACAATTTTGATAAGCGGGAGTATTTGAATATGAGACAACTGGACAAGTATCGATATCAATGCTCCCAGTGCAAGGATATTGTCTGCAATTCAAAACTGAAAGGTCTTCAGGATCATCATTTCCGCCATTTGCCCTATCGCTTGTATTTAAAATGTTTAGTCTGTGGCACTTGCTATAATCATAAACCCAACATAGCAGCTCATCTTCGGACCCGCCATAATATATTTGAACGGGAAACACCATGGCGGGAGCAGCGTAATAAACCACAATACGCATATGTCCAATCGAAGGACACCGATAAAGTCAAAAGTAGACCGGAATCACCAGTTGCTGGCTCCTCAACATCATCGTCAGCAGTCTCTGCTATGGGTAGCAGTCGAACGCTTAAGCCTCAACCAGGTGGATTGCCCACACGGCCTGCAGGTCTGAATACTCTGGAAGATAGCATCTCCTATCACAATGCCGTAGATCTGGACTTTATCACATACTTTTGCCCGAAATGCAATCAGAACTTTGATTCGCATGCATTCTGGCGTAAACATATTGTGGAGCAACATAATTACAATTGTCGAGAGGGTCTTAACTTTCGACAGATGGATAATCATCACTACTTGTGCCTAGAGTGCTATAAACGCGTCACGGTCACCCACACCAAGGGCGCCATTGGTCAGTTGCAATCGCACAAATTTCGACATCTACCCTATCGCTCCTTTAAATGCTTGACCTGCAATGGCGAATTCGTACGAAAGCAAATGTTCTTTAAACATTTGAACAGGGATACCAATAGATGCGATAATCGCCCCAGCGGCGATGGACCAATCATTGACGATGATGAACAGGACGTGGCACAAGTCACAAGCGAAGTAGTGACCGTAGATGATGAGGAAGTGCATCCTGCCACCTATCGTTTAATATGCCCGCAGTGTGGTGTCAATATCGACCCAAGCACCAAAGCCGTTTGGCGTGAGCACATCAATATCTATCATGGCCTCGGGAAAAAGGAACTTTTACATATGCGAAAAGTTGGTGACGATCTCTATCGTTGCTATGACTGCGATGAGGAGCTGCAGACTAAGAAGTTGCGTGTACTTCAGCAGCATCGTTTCCGTCATTTGCCCTATGCCGCCTACATACGGTGCATGATATGTGAGCACCAGCAACATGACGAAGACGATGGTGTCGCCGCTGCAGTTGGTATGTATAATATGCGGGAATTGCAGCAACATATACGTGAACATCATCCCGCCGTTGGTGAGAGCAAAGAGCAAATGCAAAGCCTACGTCAGCAGGCCGCCGAAGAGGAGGTTGATGAGGATAGTAATTTGGAAAACGAGACCGTAGCCAGTTCGGGATCTGGTAATGGTCCATATATGCCGGTCCCACCACATTTGCTGGAGGATACCGAAGATTTTGAGGAGCAATATTTACTTGGATAA
- Protein Sequence
- MEGMDLWTSMFSNDFEEGEEGEESEQYVNGTGTGGDDKPPADTDDTIAEGYDDDDDAADEELMEMDDNGDDGVETEKSGKKKGPEPDDDAIFDFELEPIVSFADPPSTPLAPAGPTAPPVRPMQRHSLPAGGSILGRPKEIRLSGVQMRATTSQINATDEHGVPINYELGVIYICPACGSEFRQQDQWKRHMNQMHQFNTRRGLNFVGMDKLYQRCLECNKRIAMHSRENLLKHKFTHLPYRCTKCYICKREYKYRQDLMVHLRMVHCEEIVNMMRGGYSSAGRKTRVREPRTEQMYRKEFCPDDDDDNIEVRNEVLEPDIDDASFGVTSTSFMDDEQTQNTTPHTVSGKRKRSNPIGSNGGATELCEDYIHYMCPDCGTECDNHAQWSQHIEFVHDYVSRRGLNFRSVDMQMQCLECKQIVTPNTIKTLRAHKFSHLPQPEWLRCKLCYKSYTEHHELVSHLLKHHNLETLIPEGDEQLTNSAGDDDDGNTTSIGNDIYDDSDDVRKRGGRISNDDMYEPHIDYLCPQCGKEFKEKKHWRTHVVQVHGMNDIVKLNFEIISDRQLKCTECEKIITNAYGIQNAQQHRITHLPFKAYARCRKCHKTYTDRKGLVKHLATYHRVGWENCKSDSICDGGPGQLPIKQPRKQIVTVANETYEIIYLDEEPSNVEENDFGEQMQADDDEYVPPPSLPVPSAATSSRYKCVDCGSLYGTQVALKMHIKEEHSLRETKHPAKKYGIAQPTEESKKTPSAMASTAASSSSTPTTSMRSTGTTIEQNYIFLCPSCGEEYKTQFEWRRHINESHNFDKREYLNMRQLDKYRYQCSQCKDIVCNSKLKGLQDHHFRHLPYRLYLKCLVCGTCYNHKPNIAAHLRTRHNIFERETPWREQRNKPQYAYVQSKDTDKVKSRPESPVAGSSTSSSAVSAMGSSRTLKPQPGGLPTRPAGLNTLEDSISYHNAVDLDFITYFCPKCNQNFDSHAFWRKHIVEQHNYNCREGLNFRQMDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCNGEFVRKQMFFKHLNRDTNRCDNRPSGDGPIIDDDEQDVAQVTSEVVTVDDEEVHPATYRLICPQCGVNIDPSTKAVWREHINIYHGLGKKELLHMRKVGDDLYRCYDCDEELQTKKLRVLQQHRFRHLPYAAYIRCMICEHQQHDEDDGVAAAVGMYNMRELQQHIREHHPAVGESKEQMQSLRQQAAEEEVDEDSNLENETVASSGSGNGPYMPVPPHLLEDTEDFEEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00503590;
- 90% Identity
- -
- 80% Identity
- -