Dstu014080.1
Basic Information
- Insect
- Drosophila sturtevanti
- Gene Symbol
- ken1
- Assembly
- GCA_018150375.1
- Location
- JAECWJ010000688.1:9698987-9701498[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0029 0.2 12.1 4.6 2 23 242 263 241 263 0.97 2 12 0.016 1.1 9.8 0.2 1 23 269 294 269 294 0.92 3 12 0.09 6.3 7.4 0.1 3 23 303 326 301 326 0.92 4 12 0.0011 0.077 13.4 1.6 2 23 339 360 338 360 0.96 5 12 1.1e-05 0.00075 19.7 0.6 1 23 367 389 367 389 0.98 6 12 0.0027 0.19 12.2 0.2 1 23 395 417 395 417 0.98 7 12 0.021 1.4 9.4 2.1 1 23 423 446 423 446 0.97 8 12 0.011 0.81 10.2 4.0 1 23 452 474 452 474 0.96 9 12 0.00097 0.068 13.6 2.9 2 23 481 502 480 502 0.96 10 12 7.2e-05 0.0051 17.1 1.3 3 23 625 646 623 646 0.95 11 12 0.0034 0.24 11.9 1.1 1 19 652 670 652 674 0.95 12 12 7.1e-06 0.0005 20.3 0.6 1 23 680 702 680 702 0.98
Sequence Information
- Coding Sequence
- ATGAGCACCAGTGAGCATGAGCCGTATCCGGTTAACTCGTTATGTCGAATTTGCTTAAATTATTTGGGCCGCAATCCTCGTCCTGGATGCCATTCAGCTGTCTACGATTTGTTTTTAGATTTCGAATTGGCCAGGAAACTTTCCTTATGCACTGGAGTCCAAGTGGAGCAGCAAGATGGTATGCCCCGCCTCTTATGCTACGGTTGCCATGGACGACTGAATGATGTTAATGAATTTCAACGGCTTTGCTTGGATTCCCAAAAGAAATTTAAGGAAATGGTGGCCAGCAATAGAATCATTCGGATGGGATGCTATGAGGAGGAGGAGCATCAGCAGCAGCTCTATCGCCATGAGAAAGATATTCAAGTGCAGGATAATGGCGATGAGGAGGAAACAATTGCGTCCAGTTTTGATCCATTAATGAGTCATAAAATGGAAATGATCGAGAATGAAGAAGAAGTATTCAAATTATTGGAAACTGTTGACAAAGAAGTAATAATTGCAGACCAGGAGGAAGGCGAGGACGAAGACGATGATGTGGAGGAAGCTGCACCAACTGAGACTGAGGAGAAACAGGACAAAGACGACGACGATGAGAAGAAGCAGCAGGAAGAACTAAGCTCTGATGATGATTTGCCATTGGCACACCGTTTAAAGGCAAAAGATCTATACAAACGACAAAGGATTTCAATTGCTCAGCGGCGTCACCAACGACGCATCATTACTTGCCAAATTTGCCAACAAAAGTTCAAAAAGCAATCAAAATTCGATGAGCATATGAAACATCATAACGATCTTTTGCCCTTCCAATGTTCCGAGGAATCCTGCAAAAAGGGTTTTACCACCGTGGGTGCCTTGCGTCTACATGTGGACTATGCCCACACCAAAAAGACACCCGAAATTCCCTGCTCTGTGGAGAATTGTAAACTGTTATTCCCCCGTCTCCGCTTGCTTACCATTCATCTGAAGAAGGTTCACAATTTGATCCGTTCGACACCACCGCGCGTGGATCAGCCCTGCACAGAATGTGGCCAAATCTTTCGATGTCAAGTGGCCCTCAAGAAGCATATGTATAAGCATACGGGCGAAGAGCTACCCTATCCCTGTAACATTTGTGGCAAAGGTTTCCACATAAACTCGGCTCTAAAGAATCATTTACTACGTCATGCCGGTATTAAGAACTATGTGTGTCCCTATTGTGGTGTGGGAAAAACCACTCGCCAGGAATGGAGCAAACATATGCTCACCCATACTCAGGAGAAGCAGTTCAAATGTGAAATCTGTCAGCATGCCACCCATACAAAGCGAGCCTTAGATAATCATGTCAAGATTGTCCATGAGAAGATTAGGAATTTTGCTTGCCAATATTGTGGTAAAACTTTTGGCAAGTCGCATGCCTGTAAAATTCATGAGATGACCCATACGGGAGAAAAACGCTGCGAGTGTAAGGTCTGTGGTAAAAAGTTCCTCTACACGGAAAGCCTCACAAAACATCTAAAAATTCATGAGAAGAGTGTGGATAGGGCACTGGAAACGTACCGTCAGCGGCAAGAGGAAAGTGGCAACGATCCATCACAAATGGATGCAAAAGATTTGCTTAAAGTTTGTGCCGAATCGGTGGCAACCATTCCAAAAGATCCACGACGCGTTGAACGTGTGGATATGGCACAGTTAGCTGGTACTGTTATAAATCCCATATCCATTGTATCACTACCTGCTCCTTTAATGGATTCAAAAATTTCCACTGCTGTGGCGGTTGATTCTGCTGGTACTGCAGCTGCAGATGCTCATCCATCACCACCACCACCGGCACCACCACCATCTCGTCCTTCTCCACCATTGAAATTTATACAGAAAGAAGGTATGCATCTGTGTCCTGATTGCAATCAAGGATTCAATAATCTCGGCAACATGAAACGTCATTACAAAAGTGTTCATGAGAAGGTCAAAGATTTTGAGTGTCGTTTCTGTTCACGTCGTTTTGCCAATTCGCAATCACTTAAACAACACGAATGGATACATACGGGTGAGAAGCCGTATGCCTGTAAGATATGTGGCAATCATTTTCGTCAGGAGGCGGCCCTCATACGACATCAGAAAGTGCACGAGGAGAAGGCACCGAAACCGACAAAATTACCAAAAGAGATTACCGAAAAAGTACGCGAAAAGGAAATATTGAAATGTGAACGTAAACGTAAAGTGGAGGCACTACGTCAGGAGATAGCCGAGGTGGCCAAAGAAGAGCTCAAAGATTTGGCCAAACAGAAGGTAAAAGAGAAGGAGCTAAATTCATATGAGCAATATCAACAGGCAGCAGCAGCAGCCACTGCGGCGGTTAAAGGAAAGAAAGCGACAAAGTTCGATGATTATCCTGATAAATCAAATGGACCAAATGCAGATCCAAGTTGA
- Protein Sequence
- MSTSEHEPYPVNSLCRICLNYLGRNPRPGCHSAVYDLFLDFELARKLSLCTGVQVEQQDGMPRLLCYGCHGRLNDVNEFQRLCLDSQKKFKEMVASNRIIRMGCYEEEEHQQQLYRHEKDIQVQDNGDEEETIASSFDPLMSHKMEMIENEEEVFKLLETVDKEVIIADQEEGEDEDDDVEEAAPTETEEKQDKDDDDEKKQQEELSSDDDLPLAHRLKAKDLYKRQRISIAQRRHQRRIITCQICQQKFKKQSKFDEHMKHHNDLLPFQCSEESCKKGFTTVGALRLHVDYAHTKKTPEIPCSVENCKLLFPRLRLLTIHLKKVHNLIRSTPPRVDQPCTECGQIFRCQVALKKHMYKHTGEELPYPCNICGKGFHINSALKNHLLRHAGIKNYVCPYCGVGKTTRQEWSKHMLTHTQEKQFKCEICQHATHTKRALDNHVKIVHEKIRNFACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYTESLTKHLKIHEKSVDRALETYRQRQEESGNDPSQMDAKDLLKVCAESVATIPKDPRRVERVDMAQLAGTVINPISIVSLPAPLMDSKISTAVAVDSAGTAAADAHPSPPPPAPPPSRPSPPLKFIQKEGMHLCPDCNQGFNNLGNMKRHYKSVHEKVKDFECRFCSRRFANSQSLKQHEWIHTGEKPYACKICGNHFRQEAALIRHQKVHEEKAPKPTKLPKEITEKVREKEILKCERKRKVEALRQEIAEVAKEELKDLAKQKVKEKELNSYEQYQQAAAAATAAVKGKKATKFDDYPDKSNGPNADPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00556082;
- 90% Identity
- -
- 80% Identity
- -