Dstu010168.1
Basic Information
- Insect
- Drosophila sturtevanti
- Gene Symbol
- -
- Assembly
- GCA_018150375.1
- Location
- JAECWJ010000696.1:3085038-3087661[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.082 5.8 7.5 3.8 1 23 310 332 310 332 0.91 2 11 1.8e-05 0.0012 19.0 0.2 1 23 338 360 338 360 0.99 3 11 5e-06 0.00035 20.8 3.4 1 23 366 389 366 389 0.97 4 11 0.34 24 5.6 3.8 1 20 395 414 395 417 0.95 5 11 0.05 3.5 8.2 1.8 1 23 423 445 423 445 0.93 6 11 2.1e-05 0.0015 18.8 0.3 1 23 451 473 451 473 0.98 7 11 0.0012 0.083 13.3 0.6 1 23 481 504 481 504 0.94 8 11 0.00081 0.057 13.8 1.1 1 23 511 533 511 533 0.98 9 11 0.00032 0.023 15.1 2.0 1 23 539 561 539 561 0.98 10 11 1.3e-06 9e-05 22.6 1.0 1 23 567 590 567 590 0.96 11 11 2.2e-06 0.00015 21.9 2.0 1 23 604 626 604 626 0.97
Sequence Information
- Coding Sequence
- ATGTCCAAAAACAGGCGTGTCGACCAAAATGAGGACCTGCAAACTTTTCTAAATAATTTCCATAAAGAAATTGATGAAAGCGACGGTCAAGGCAACAAGATGAAACATAAAGTTGTTAAACCAGTCAAAACCAAGGATTATGAAGATTACGAAGGCTATGAAGTCGCTGTGGATGCTGGTAATGCTCCCAGTGAAGAGGAGACGGAGGAGCAAAATAATGAATCGGACTATATGGATGATAATGATGATGAGGATAAATATTTCATAGACGATGAGGGGAATTGTTATATCAAGACTACACCTAAAAAGCAATTGGAACTGAAAAAGAAACTTGAAAAGAAGGCCAAGCAAGCACAACAACAACAACAACAACCACCCAGCCGTTTGACGCGCTCCAAAGCAGGATCGGGAGCCGCTGTTGTCACCAAAGCAACTTCGATAGCAGCGCCAAACAAAGCTATTAAATTGCGCCCAGCACAAACTTCACCGAAACGGACACAACCCAATAAGACGATAACTTCCGTTAGTGTACGTCCAGCAGGGTCAAAATCAAATCCGTCAGTTAAACGGGTACAACCATCTGCAAAACCCATAACATCAACACCACCACCACCACCACCACTACCGCCAGCACCCATTACAGAAGAGGTTTTAGCTGATGATGATGATAATGTTGTAGAAGAACTGATTGAGGAATATATAGAAGATTTTAATGAAAAGACCACAAAAATTGAAATTAATCCAGTAGACGAGGTCTATCAATTTGAGGACGATCAAAACGGTAACGATCAATCAAATACCCAAGAACTTGATTTTATAGACTCTGGCAAACAATATACATTGAAACCGGCTGAACCTTATCCGGTAGGAAAGATTGTTATGTCCACGGCAAAAAAGAAGGAAATGGCCACAAAAATTGGACACAAGTTTTCGTGTTCGCAATGCGATTATACGACAAATCGTAAATATCTAATCACACGTCACTGTCTGGTCCACGATGATGAATATGGATTCAAGTGTTCAATATGCGAAAGAGGATTCAAAGCGAATGCTGGCCTGGTTAATCATATGAATACCCATATGGGTAAAAAGCCTCATAAATGCAAATATTGTGAGCGTGCATTTACCACAAGTGGAGAATTAATTCGACACACACGATATAAGCATACCAAAGAGAAGCCACATAAATGTACGGAATGCAGTTATGCTAGCGTAGAATTGACCAAACTAAGACGCCATATGACCTGTCATACTGGCGAACGTCCATATCAGTGTCCACACTGTACATATGCCTCGCAGGATATGTTTAAATTGAAAAGACATAGCGTTATACATACAGGAGAAAAGAACTATGTGTGTGATATATGTCAGGCGCGTTTCACTCAATCAAATTCATTGAAGGCTCACAAATTAATCCATAGTGTGGTGGATAAGCCTGTATTCCAATGTGAGCTATGCCCCACGACATGCGGTCGTAGGGCTGATTTGCGTACACATGTGGCCAATATGCACACGGAGCAGGAGAAACCCTTCGAATGTAAACGTTGTGGACAACAATTACCGGATCGTTATCAATATAAATTGCATATTAAATCTCATGAGGGCGAGAAATGTTTCCGTTGCACATTCTGTAGTTATGCATCAGTTTCCCCCCGACATTTAGAGTCCCATATGCGTTTACATTTAAATGTGAAACCCTTTAAATGTGAACAATGTCCTCAAACATTTCGTCAGCAGCAGTTGTTGAAGCGTCATATAAATCTGGTACATGATGATGACTATCAGCCTCGACCGCCACGACAAAAGCTACATTCGTGCCCAAGTTGCCCAAGAATATTTACCCACAAGGGCAATCTAATGCGTCATATGGAAATCCATGATCATTCAGTTAATGCACAAGAGGAGAAACTTAAACTTAAAATGGGTCGTAATTTGAGAATCAAACCGGATGGTACTGTTGTAAACATTGATAGAAATTCACAGGAAGAAAATATAGAATATTCAAATGAAGTTTTAAATCTGGAGTATATCGAAGAAGAAGTTGAGGTGATAGATAAGCCATCAACTGTAATTAATAAGCAACCAATTATTATAAATCGTAGCCTAAAAAGCAAATCGGATAGCAAAGGTTTTCAAATCAAAGAAGAGCGAAATGAGACGCAAGAGTTTACCGTTAAAGTTCAAGATGAGAATGGTCAAGTGGTTGTAGTTGAACTTGTCAAAAATGATGAAGAGGTGGTGGTTAAACGTGAGCCAAAAACTATTTTGGTTAATGAAGATAATTGTTTTGGTTTCGAGGAGGACAATGAGGAAGGCAATGAGGATAATACTGATAATCGTGTCTATGAGGATTCGTCGGAGCTCTTTCAACTTATGGACCTGATTGAGCAAGATGCTTAA
- Protein Sequence
- MSKNRRVDQNEDLQTFLNNFHKEIDESDGQGNKMKHKVVKPVKTKDYEDYEGYEVAVDAGNAPSEEETEEQNNESDYMDDNDDEDKYFIDDEGNCYIKTTPKKQLELKKKLEKKAKQAQQQQQQPPSRLTRSKAGSGAAVVTKATSIAAPNKAIKLRPAQTSPKRTQPNKTITSVSVRPAGSKSNPSVKRVQPSAKPITSTPPPPPPLPPAPITEEVLADDDDNVVEELIEEYIEDFNEKTTKIEINPVDEVYQFEDDQNGNDQSNTQELDFIDSGKQYTLKPAEPYPVGKIVMSTAKKKEMATKIGHKFSCSQCDYTTNRKYLITRHCLVHDDEYGFKCSICERGFKANAGLVNHMNTHMGKKPHKCKYCERAFTTSGELIRHTRYKHTKEKPHKCTECSYASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKRHSVIHTGEKNYVCDICQARFTQSNSLKAHKLIHSVVDKPVFQCELCPTTCGRRADLRTHVANMHTEQEKPFECKRCGQQLPDRYQYKLHIKSHEGEKCFRCTFCSYASVSPRHLESHMRLHLNVKPFKCEQCPQTFRQQQLLKRHINLVHDDDYQPRPPRQKLHSCPSCPRIFTHKGNLMRHMEIHDHSVNAQEEKLKLKMGRNLRIKPDGTVVNIDRNSQEENIEYSNEVLNLEYIEEEVEVIDKPSTVINKQPIIINRSLKSKSDSKGFQIKEERNETQEFTVKVQDENGQVVVVELVKNDEEVVVKREPKTILVNEDNCFGFEEDNEEGNEDNTDNRVYEDSSELFQLMDLIEQDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00556007; iTF_00483881; iTF_00501236; iTF_00591130; iTF_00577952;
- 90% Identity
- -
- 80% Identity
- -