Basic Information

Insect: Drosophila stalkeri
Gene Symbol: ci
Assembly: GCA_035047405.1
Location: JAWNPR010000113.1:1055478-1064972[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.013 0.94 10.2 0.6 3 23 457 480 455 480 0.94

2 5 0.13 9.7 7.0 0.1 3 23 490 515 488 515 0.80

3 5 0.00017 0.013 16.0 2.9 1 23 521 545 521 545 0.98

4 5 0.00031 0.022 15.3 0.4 1 23 551 576 551 576 0.97

5 5 1.3e-05 0.00092 19.6 0.3 1 23 582 607 582 607 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.013	0.94	10.2	0.6	3	23	457	480	455	480	0.94
2	5	0.13	9.7	7.0	0.1	3	23	490	515	488	515	0.80
3	5	0.00017	0.013	16.0	2.9	1	23	521	545	521	545	0.98
4	5	0.00031	0.022	15.3	0.4	1	23	551	576	551	576	0.97
5	5	1.3e-05	0.00092	19.6	0.3	1	23	582	607	582	607	0.96

Sequence Information

Coding Sequence: atggatGCGTATACCTTACCAACATACTTTCCCCTAGCATATACAGAACTACAGTTCTTAGCGTCGAGGCGggctgcggcagcagctgcggcgGCTTCTGTTCTACCGAGTAGCTCACCTAGCAGTAATAACAGTAACCAGGTGCCCACAACTGATGTGAGCAGCAGCTCAGTGCCAGTTGCTGTATCTCCTGGGATGCCTGTGACGCTTACAGATTCCAGCTTGGCCTCCACCTTAGCATCTACTGCGAATGCGCAAATTCTCGGCGGCGGTGCCACCGGaggtcatcatcatcatcatcatcatgttcAGGCCCACAGTGTGGGTCAGCAGCATGATTTTCATCCGGCCTATAGAATCCCTGGCTACATGGAGCAGTTCTATTCAATACAAAGAAGCAGCCCCACCGCCTCCTATCATGatccATATGCAAATTGCCCGCCAGCTTTTCATTTAGCCGGATTGGGTTTGGGATCTGGCGAATATTTGAGCGCTCGAGGAATAGGTTCCTTAAGTGATCTACATCATGcggcagtcgcagcagcagcggcagctgcagccgcaggCTCTTTGGCCAGCactgattttcattttagtcTGGATGGTAATGGTCGTTTAAGCAGTCCGCGTCAACCGGGCGGTGGTAGTATGCGCGCCAGTATTAACCGTAAGCGTGCGCTTTCCTCATCGCCATACTCGGATTCATTCGATATCAATTCGATGATACGTTTCTCGCCCAATTCTTTGGCCACGATGGTCATGAATGGATCGCGGGCGAGCAGCGCAGCGAGCGGCTCCTATGGCCATCTATCTGCCAGTGCCATCAGTCCGATAGCTCATGCTCCGCATCTACAACAGCTACAGGCCCACATCCTACGGGCTAGTGCCGGTTTACTCCATCCCATAACCCcccaacaggcagcagcagctgctgctgcgagctATTCTATGAGCCATGTCGCTAGCGCTGCGGCGTTGGGCTTAACGGATTTCCCCATGAAATCCAAGGATTTGGTCAGCCAGTCAACAACGCCAACCTCCACTCTGAtaagtgcagcagcagatgaATCCTTGCTTGATCGCAATCCTATCACTTATAATAAGAATAATGACGAAGACAGAATGGATCGCAACAAGAACAAGCTTCTTGAACAACCATCATCAACGTCGGAGAGTGTTGCTCAAGTTGAGGCAGATAGTGCGTCTGCAAATTTGCAGGAGCGGCGTCAACGTAACAAGCCTTTTTGCGGGGATCATCGGGTGCATAGCCACGATGAAAATCCAGATCAGCAATTTAACGAATACGATTGTGCTACGGCGGATACAACGGACATTAAGGATGAGCCGGGCGACTTCATTGAGACAAATTGTCATTGGCGCAACTGTAGCGTTGAGTTTATCACCCAGGACGAATTAGTTAAGCATATTAACAACGATCATATTCAGAGCAACAAGAAGGCATTCATTTGTCGCTGGGTAGATTGCTCGCGTGGTGAAAAGCCATTCAAAGCCCAATACATGCTTGTTGTCCACATGCGACGGCATACAGGGGAAAAACCTCACAAATGCACGTTTGAAGGATGCTATAAAGCATACTCTCGTTTGGAAAATTTGAAAACCCACCTACGCTCCCATACAGGTGAGAAGCCGTACACCTGCGAGTATCCGGGGTGTAGTAAGGCCTTTAGCAATGCGAGCGATCGTGCAAAACATCAGAATCGTACTCACAGCAACGAGaaaCCGTATATTTGTAAAGCACCCGGTTGCACAAAGCGTTACACAGATCCCAGCTCTCTGCGTAAGCATGTCAAAACCGTGCATGGTGCAGAGTTCTATGCAAATAAGAAGCATAAGGGTTTGCCTCTTCATGATTCCAACTCCGGACTGGATAGAGAAAAGCACAGAGATGGCCGAGATAGCAATAATCAGCATcagcaccatcagcagcatcagcaacatcagcaacttCAACACCAGCAACTGCAAGAGCAGCACATTGACTCCAGTCCTTGCAGCGATGATCTGCATGGTGCCAAGCCAGTCAGTGTGTCCAGCCCGAGTATCAAGTCCGAGTCTGATGCAAATTCACCTGGCCTATTGGTTGCGCAGGCGGGATCCTCTACAACATCAGTTTCTGATTGCGTCATGCACATATACAGACAGGATGATTTAAGAAGTCCTTCGGTGCCGACCCTCGATGAGTGTTGGCCCTATGACGATGATGTAGACGCAGTCGATCTTCCAATCGTGCTACGTGCAATGGTTAATATGGGCAATGGAAATACTGCACCATGTGCCAATTTACCACGCCAGCGTTTTCGTAGTCGTCTACAAACCAAGGTCATCAACTCGAGCAATTCAATGCTGTCCAACATACCGGAGAGTAATCATCATCACCACGCCCTTGGTATAAAAGAACTGAATCAGCGTATAACTGAGTTAAAAATGGAACCGGGCACAACAGCAGAAGTACACAGCCAGGCAACACAATGTCATAGTCGAGCTGCGGGACAGGTCACCGGTCAGCTTCTGCAGCAGGGTTACACTCAAACGACATCCACGTTACAGGCGCAACAGCGTCGAGATAgtcaaaattcaaatgctaGCACATATTACTGCAGCATGCAGAGCCGACGTAGCAGCCAATGTTCACAGCTGTCATCGATGTCAACAATGAGGGCCTGTACAGTATATAACACGGCTTCGGGCACGCCGTCTTTGTATGATCCCATTTCGCCAGGCTGTTCTCGCCGCTCCagtcaaatgtcaaatgtggTTACAGGTCAACCTCCACAAGTGCCCGGTAGTACTATGAATGATAGCTTACCATTGGTGCATGGCCCACCGAATAATGCATGTCAGCAATATATTGCAACAAATGGATCgcgtaacagtaacagtaataGCCTGCCACCTCCGCCATCCTCTCATCTAATTGCAACACATTTGCAGCGCTTGCAGTCGAACGATACGATTGGCTATTACCACAATGTGGATCcaattcaaaatcaattgaCAGTTGGTCAAAATGGTGGGCGCTCTTCTATACCAAATGATTTACAGTCTCCGCCgcttaattcaaaatattcgtATGACAAGGAGATAAATGGTGTTCATTATCATCATAGACGTCAGTCGGAGCCGATTATGGCCCATCTGAGCATAGAGCGAATAATAAGATCACCTGCTTTCGATTCTCAAGCCACCCATGGTAATACAAATCGTGCTTCTTTCTGCACTATTAACACTAACAATAAGGATTGCGAGATAAGGACAAAAACAACCGCTCTATGTAATTCAAGGGATCATCATCCAAATGAAAAAGTTAATTTGGACGAGGTTGAAGACCTAATATTACCAGATGAAATGCTTCAGTATCTTAATTTGGTGAAGGAAACGGAGAAGCCCAAGGCGAAACCAATGACGGACGTTAATGAAAAATCATTATTCACAAACAATTCGCAATATATTGCTTTGGTATCGAATGGTTCCAAATCACCTACAAACATGCCCAACTGTCCTTCTCCAGTTATGCAACAGATAATGTCACACCAATCAGGACATACGATGTCAGCGCTTGGCAGTCCCTACTCTCAGCGAAACTGCGAACTAGagggcggcaacaacaatgcgtaTCGTCAACACAGAGTTTACTGTACACAACGATCAAATAATGAATTGACCTCACAATATCCATATGtgcctgctccagctccagttttAGTTCCAGCGCCAGCCCAGACTCAGGATCAAATTCAGCCACTGTCACCACTCGACGCGCTTAGTTATGAGCAACCACAACAATTGGCATcacattcaaatcaaataatcgATTCATCGATGACCAGTCTTCCGGAATTAACAAatgttatttctattattccAGTTGATCAAAAGCTTAACAATGTTAACGAGATACAATGTGGGGTCGTTAGCCAATCGCAGTTGTCACCAACAGCAAATATaagtggaaatggaaatggaaatacaAACGTCAATTATCCAATCAAGTTTCAAAATCATAATCCAGGAGGAGCAAAACCTAATAATGGAGGAGCACAACATAAAATCTTGGCGGACCAACAGAACAGCAGTATGGGATCGATGCATTCCGATACTTACCAGCGAACCCTTGAATATGTACAAAGCTGTCAAAACTGGATGGAGACGAATAGTGGTAACACAATGGGAAGCACTTCACTGACTACGCCAACCTtgtacaacaataacaatcaacCCATTTGGCCGGACGTTAGCAGCTCTACGCACCCCCATCCcagtacaaattttattatcaacGATATGACAACATCTTTGAGCTCTCTTCTGGAGGAGAATCGTTACCTGCAGATGATGCAATAG
Protein Sequence: MDAYTLPTYFPLAYTELQFLASRRAAAAAAAASVLPSSSPSSNNSNQVPTTDVSSSSVPVAVSPGMPVTLTDSSLASTLASTANAQILGGGATGGHHHHHHHVQAHSVGQQHDFHPAYRIPGYMEQFYSIQRSSPTASYHDPYANCPPAFHLAGLGLGSGEYLSARGIGSLSDLHHAAVAAAAAAAAAGSLASTDFHFSLDGNGRLSSPRQPGGGSMRASINRKRALSSSPYSDSFDINSMIRFSPNSLATMVMNGSRASSAASGSYGHLSASAISPIAHAPHLQQLQAHILRASAGLLHPITPQQAAAAAAASYSMSHVASAAALGLTDFPMKSKDLVSQSTTPTSTLISAAADESLLDRNPITYNKNNDEDRMDRNKNKLLEQPSSTSESVAQVEADSASANLQERRQRNKPFCGDHRVHSHDENPDQQFNEYDCATADTTDIKDEPGDFIETNCHWRNCSVEFITQDELVKHINNDHIQSNKKAFICRWVDCSRGEKPFKAQYMLVVHMRRHTGEKPHKCTFEGCYKAYSRLENLKTHLRSHTGEKPYTCEYPGCSKAFSNASDRAKHQNRTHSNEKPYICKAPGCTKRYTDPSSLRKHVKTVHGAEFYANKKHKGLPLHDSNSGLDREKHRDGRDSNNQHQHHQQHQQHQQLQHQQLQEQHIDSSPCSDDLHGAKPVSVSSPSIKSESDANSPGLLVAQAGSSTTSVSDCVMHIYRQDDLRSPSVPTLDECWPYDDDVDAVDLPIVLRAMVNMGNGNTAPCANLPRQRFRSRLQTKVINSSNSMLSNIPESNHHHHALGIKELNQRITELKMEPGTTAEVHSQATQCHSRAAGQVTGQLLQQGYTQTTSTLQAQQRRDSQNSNASTYYCSMQSRRSSQCSQLSSMSTMRACTVYNTASGTPSLYDPISPGCSRRSSQMSNVVTGQPPQVPGSTMNDSLPLVHGPPNNACQQYIATNGSRNSNSNSLPPPPSSHLIATHLQRLQSNDTIGYYHNVDPIQNQLTVGQNGGRSSIPNDLQSPPLNSKYSYDKEINGVHYHHRRQSEPIMAHLSIERIIRSPAFDSQATHGNTNRASFCTINTNNKDCEIRTKTTALCNSRDHHPNEKVNLDEVEDLILPDEMLQYLNLVKETEKPKAKPMTDVNEKSLFTNNSQYIALVSNGSKSPTNMPNCPSPVMQQIMSHQSGHTMSALGSPYSQRNCELEGGNNNAYRQHRVYCTQRSNNELTSQYPYVPAPAPVLVPAPAQTQDQIQPLSPLDALSYEQPQQLASHSNQIIDSSMTSLPELTNVISIIPVDQKLNNVNEIQCGVVSQSQLSPTANISGNGNGNTNVNYPIKFQNHNPGGAKPNNGGAQHKILADQQNSSMGSMHSDTYQRTLEYVQSCQNWMETNSGNTMGSTSLTTPTLYNNNNQPIWPDVSSSTHPHPSTNFIINDMTTSLSSLLEENRYLQMMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00544781;
90% Identity: iTF_00493948;
80% Identity: -