Dsta002262.1
Basic Information
- Insect
- Drosophila stalkeri
- Gene Symbol
- Znf296
- Assembly
- GCA_035047405.1
- Location
- JAWNPR010000039.1:24650692-24652146[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 3.8e-06 0.00028 21.2 0.9 3 23 13 33 12 33 0.96 2 11 3e-06 0.00022 21.6 1.6 1 23 39 62 39 62 0.97 3 11 8.9e-07 6.5e-05 23.2 1.1 1 23 154 176 154 176 0.99 4 11 3.1e-05 0.0023 18.4 3.9 1 23 182 205 182 205 0.97 5 11 0.00092 0.067 13.8 2.5 1 23 211 234 211 234 0.93 6 11 0.034 2.5 8.8 3.9 1 21 239 259 239 260 0.90 7 11 0.022 1.6 9.4 6.0 1 23 283 305 283 305 0.97 8 11 3.7e-07 2.7e-05 24.4 1.4 1 23 317 339 317 339 0.98 9 11 9.2e-05 0.0067 16.9 2.6 3 23 347 367 345 367 0.96 10 11 3.9e-06 0.00028 21.2 0.4 3 23 376 396 374 396 0.96 11 11 9.2e-06 0.00068 20.0 1.3 1 22 402 423 402 426 0.92
Sequence Information
- Coding Sequence
- ATGAATAATgttgcaaaaatgaaaagtttgaACTCCTGTGCTACATGCGGAAAGTGCTTTTCGAAGCCTGCCTTACTTCGTCGTCATCTGGCCGTACACAGTACTGAAAAGGCGTTTCCATGCGAAAACTGCAGCAGTCGTTTCTCTCAAAAAAGCTCACTGCAACGTCATTTACGTATCAAACACGATGTGGCCAAGGAGTGCTATGACTCCGACGTTGCCCAGCATGCACTGGCTGCCTTAAAGCTGCTACAAGGCAGCAGCGAGACAACTACAGATAATGCACTTATTAGGCAAAAGACTACACGAGCAGTTTCGTCGGTTACTGTAGAAGAGAGTACTCTAGAAGAGCAAGCATCTTGTGATGTAGTAGAACTGAGAGATAAGCTCAATCCAGTTGGTGAAGTCAATATGCTCATCACACAGCGCATAATGCGACAGCATCCCAATAGATGCTACTATGTCTGTGAATATTGCGCTAAAGAATTCAGCAAGAGTTACGATCTCATAAGGCATCGTCGCTCACACACCAAAGAGACGCCCTATCCATGCAATCAGTGCTTCAAGCGGTTTGCGACACAGAGTAAGCTCAACGAACATCACAAACGGCTGCATACTGCTGCGAGAAAGCATACATGCAGTGAGTGTAGCTCCAGCTATAGCTCTAAGGGTCAGCTTCACAGGCACTTGGCTGAGGAACATCCCAATAGGATCTATAGTTGTACACACTGTAGTCGCACTTTCCAAACGAAATCGGCTTGTGAGGCACATAAGAAACTGGAAACAGATTCGCTCAGAGGAAAACTCATGGAACTTTTGCCGCAGCCGGTGCTATCGCAGCGCAGCTACAAGTGCATCTACTGTGAAAAGCAGTTCAAACGTAAATTCAATTGCCGTACACACATGCTGATCCACTTACGTCGTTTGATGGActcaaaacaaatgaaatatagtTGTCTGCAATGTGGCAAGCACTTCACACGGCCCAACGACTTGGCACGTCATTTGTTAACTCATTCCAAGCTTAAGATGCACTTATGCCAGGTGTGTCAGAGACGTTTCACACTGAAATCCACATTGGCCAGACATCTGGAAACGCATCAGCCACAGAGGAGCAGCGTTAATTGTCAGGTGTGTGGCAAGAGTTATGCATCCAAAAcatcgctgcagctgcatctgCGTTTGCACACCGGCGAACGACCCTtcaaatgtgaaatatgcGGTGAAACTTTTCGTACGTCGGGACACAGGTTGGATCATATGCGAGCCCAACGGCACAAGAATGCATCGGCATCTTCCAATGCACTCATGCtctaa
- Protein Sequence
- MNNVAKMKSLNSCATCGKCFSKPALLRRHLAVHSTEKAFPCENCSSRFSQKSSLQRHLRIKHDVAKECYDSDVAQHALAALKLLQGSSETTTDNALIRQKTTRAVSSVTVEESTLEEQASCDVVELRDKLNPVGEVNMLITQRIMRQHPNRCYYVCEYCAKEFSKSYDLIRHRRSHTKETPYPCNQCFKRFATQSKLNEHHKRLHTAARKHTCSECSSSYSSKGQLHRHLAEEHPNRIYSCTHCSRTFQTKSACEAHKKLETDSLRGKLMELLPQPVLSQRSYKCIYCEKQFKRKFNCRTHMLIHLRRLMDSKQMKYSCLQCGKHFTRPNDLARHLLTHSKLKMHLCQVCQRRFTLKSTLARHLETHQPQRSSVNCQVCGKSYASKTSLQLHLRLHTGERPFKCEICGETFRTSGHRLDHMRAQRHKNASASSNALML
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00516414;
- 90% Identity
- -
- 80% Identity
- -