Dsor011932.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Drosophila sordidula
Gene Symbol
-
Assembly
GCA_035047465.1
Location
JAWNPQ010000202.1:3238774-3244179[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 26 0.0028 0.18 12.2 1.8 1 23 212 234 212 234 0.96
2 26 0.16 10 6.7 4.2 1 23 240 262 240 262 0.97
3 26 0.054 3.5 8.2 0.7 2 23 294 315 293 315 0.96
4 26 0.0042 0.27 11.7 1.9 1 23 392 415 392 415 0.94
5 26 1.6 1e+02 3.6 5.5 2 23 426 449 425 449 0.93
6 26 0.79 51 4.5 0.7 1 21 455 475 455 476 0.92
7 26 0.25 16 6.1 1.0 1 23 492 514 492 514 0.98
8 26 0.0056 0.36 11.3 0.2 1 23 592 615 592 615 0.95
9 26 0.028 1.8 9.1 0.1 3 22 626 645 624 645 0.93
10 26 0.033 2.1 8.9 1.3 1 23 654 677 654 677 0.95
11 26 0.0003 0.02 15.3 0.3 2 23 710 731 709 731 0.97
12 26 2.9e-05 0.0018 18.5 4.4 1 23 739 761 739 761 0.99
13 26 0.014 0.91 10.0 0.5 1 23 908 931 908 931 0.95
14 26 0.014 0.93 10.0 0.6 2 22 939 959 939 959 0.95
15 26 0.015 0.99 9.9 0.3 1 23 968 991 968 991 0.93
16 26 1.5e-05 0.001 19.4 1.2 1 23 1016 1038 1016 1038 0.97
17 26 0.00014 0.0089 16.4 0.9 1 23 1045 1067 1045 1067 0.98
18 26 0.096 6.2 7.4 0.0 2 21 1094 1113 1093 1114 0.94
19 26 0.011 0.69 10.4 3.7 1 23 1159 1182 1159 1182 0.96
20 26 0.0071 0.46 11.0 0.4 1 23 1219 1242 1219 1242 0.96
21 26 0.0016 0.1 13.0 3.8 1 23 1268 1291 1268 1291 0.97
22 26 1.4e-05 0.00088 19.5 0.1 2 23 1319 1340 1318 1340 0.95
23 26 4.6e-05 0.003 17.9 2.9 1 23 1346 1368 1346 1368 0.99
24 26 1.9e-06 0.00012 22.2 1.9 1 23 1374 1396 1374 1396 0.97
25 26 4.4e-07 2.9e-05 24.2 2.3 1 23 1402 1424 1402 1424 0.99
26 26 0.00069 0.045 14.2 0.3 1 21 1430 1450 1430 1454 0.91

Sequence Information

Coding Sequence
ATGTTGCCGTCGGATATTTGTCGCACGTGCGCGCTGCAGGTTGGCTGCTTGCTGCCGCTGACGACGCGTACAGATAAATACGCCAATAAAAGTTTCAACGACATGTTGCACGAATTGACCCAGAACGATCCTCTGCTGGAGCACACAGATGAGGGCCTGCCACAGCATTTGTGTAAAGACTGCCTCGGCAAGTTGGAGGCGGCCTATGCGTTTGTGCTGCAGGCGCGCCAGGCACAggagcaactgttgctgcagctgcgcaaaGGAATGCAGAGGCAGTGCCTAGACGAGATGCCCATTGACATTGGCATAGGGCACATAAAAACGGAAACGGACCTGGACTTGCCCTTGGGTCAAACCAAAAGCGAAGCGACTCAGCAGCAGGATGAGATGGAGGTGGATGTGGATGGCTTAAAGTGGCAGCCGGAAAGCGATAGCGACAGCGCTCAGGCAGCTGTTGAAGACCGCCAGGATGTGGACTTCAAGCCCAAGCAGCTGCGGCGCAGCGCACGCAAAGCTAAACCGGTCACAGACAGCGAAAATGAAGCCAGCTCTCTAAATACAAAGCCCGTGGCGCTCAAGCGTCGTCGCGGACGACCAGCCAAAACGGAGACCATCAACGAGGCCGGGCGTCATGCGTGCGGGGTGTGCGGCAAGACCTTCTCCTGGCATCGCGACATGCAGCGCCACGCGCGCGTCCACTTCGAGCAGGCGGCCTACGTGTGCGACAGCTGCGGGAAGTGCTTCCTGCGCAAGGACAAGTACATGTTCCATCTGCGCTCGCACGAGCGGCGCGCAGCCAAGTGCCAGGCGCTGCAGCTCGGCGGCGAATGGCGCTTCGCGGAGCGCCTCTACAGCTCGGCGCGGCTGAAGCGGATCGAATGCAAGCTTTGCGGCCTGAAGTGTCAGCGCATTCAGGAACTGCGCGAGCATCTGGCCAGCCACGTGCGCGTTGAAACACTGTCCACACTGAGCCTGGAGGCGGATGTCATCAGGGAGCGTTTCGGCAGCGAGCAGCCGCCGTTGGATTTGGCGCAAATCAAGCAACAGGTGTGCACCGATATTGCCGAGGGACGTGCGCAGCTGGAAAATTACTGCGCCGTGGTCAATGCGTATGGCTACGAGCTCGGCCTGAGCGACTCGGATGAGGAgccggtgggcgtggcgcctCCATACCAGTGTCCGCCCTGCAGCCTGACGTTTACCCGCAAACATCGCCTCATGCGGCACACGCTGGAGGAGCACACGCAGGCGGAAAGGGATGCTGTCGGGCAGCGCTGCGACGTCTGCCACATTGGCTTTGTGTGCCAGCGGTTGCTGGAGCAGCACCAGCGCACGCAGTGCCACAATCCGCTGAAGCGCCACAGCTGCCCCAACTGTCCGGGCAAATTCATTTGGCAGCGCAATCTCGAGCAGCACGCTTGCACGCTGCCGGAGGAGGAGCAAccggagcagctgcagcgcgtTCGCCAGTTCCAGTGCTGCCTGTGCGATGCCCACTTGCAGAGCATGGCAGCCTTGCGCGCCCATGTGCTCACCCATCGCGACGGCAGAAGCGGCATTGATGGAGCTCAGCAAGCTGCCTTCTTTCGCACCTACCATCCCGACGGGCTGGACTGCAGCCCGGCGGAGCTGAGCGCGCGCATTGCCGGCGACTTTGAGGCACAGAACTACGGACGCTACTTCAATGCCAGCACGGACAGCGGCCAGGAGCTGGACTTCTTTGCCTCGGACACGGACACAAGTGATGAGGAGAGCTCTGTTGGAGCTCGACATGCGTGCGCCCTGTGCGGCGAGTCCGCAGTGCGCCtggcccagctgctgcagcatcagcGTAGCCAGCACTCGGAGCTGCAGGACCGGCTGCCGCATCTCTGCGAGTACTGCGGCCTGGGCTTCGTGGCCGAGGCGCTACTCCAGCAGCATCGTCGACGCGTCTGCGCCAAGCGGCAGGCAAAGTTCCGTTGCCAGGATTGCGGCCTGCACTTTTACTGGCTGGCCAACTACGAGCGGCACGTGCAGCTGCGGCACGAGACGGAGGGGAAGGCAGAGGCGGcaacggagacggagacggagcaGCTCGGCGCCAGTCTGAGCAGTAAGCGCCAGCCCGCAGCAGCCAAGCTGCAGTGCAGCGAGTGTGAGAAGGTCTTCATCTGGCCCAAGGACTTGACGCGGCACAGACGTCTGCACCAGCCGCAGGCGTTGGCCCAGTATGAGTGCGCCCACTGCGAGCGGAAGTTCCATCGCAAGGATGGCCTCAAGTCGCACATGCGTGTGCACGGCGAGCAGCTGGACGCAGCGACCACCAGCGAGGCTCCTCAGGTAGCGCCCTTGCTGCAGCGCATGCCGGTGGTGCTGACCCAGCTGTGCCGGCCCAACGGCTGCAAGCAGATTCGGTGCATGGTCTGCCTTTCGCAGCACACCAAGATCTCCGATCTGCGCACCCATCTGGCCAGCCACCAGCAGGCGCTGCAGTTCGTCGAGGAGCGCGCCAGTCCGGAGAGCGTGGCCAGCATCAGCCGTGCCCTGTACCCAGAGCTCGCGCTGCCGCTGGAGCAGCCGGAGCTCATCGAGCGCATACAGAGCGATGTGGCCGCGGGCGCGGAGCTGGACAGATTCGCCTCGATCACCAACGAGGCGGGCATGGAGCTCAGCCTGGACAGCAGCGAAACGGATTCCGATTCGGACTCCGGCGAGCCCGCGGGCAGCGGACGCCGCTACAGCTGCGAGCTGTGCCCGCTGCAGGTGCCGCGCAAGCATCAGCTCTATGCCCACCAGCTGGAGCGGCACACCTGGCAGCAGGCGAGCCGCGTGTGCGGCCACTGCCAGGCCAGGTTTGTcagcgagcagctgctggagcatcATTATCGCACGCTTTGCAGGAATGCCCAGCGGCGCTTCCTCTGTCGCAAGTGCCCGTTGCGCTTTCGTTGGCGCGAGAATCTCAAGTTGCACATGGCCGTGGCGCACCAGGAGGCGAGCGTGGAGCAGGCCAGCCTGGGCATCCAGCCGAATGGCACGCATCTGCTGCCCGTGGTCAGCTACGACTGCGGTGAGTGCAATCGCAGcttcaaaatgcaaaaggaTCTCACGCGGCACACGCTGATGCACGCTCAGGAGTCGAGCATTTATCGGTGCCGCTGGTGCGCCCGGCGCTTCTATCGCCAGGCCAACCTGCTGCAGCACATCGAGCGCCATGGCATCAGCGCCGAGCAGCTGCCTTATGCGGAGGCTCTGCTCAATGCCAGCCGGCATCCGCATGGCGCCAAGTGCGTCCAGTGTAAGGTGTGCGAGGTGTCCTATCCCACAATTGCTGCACTGCGCGAACATCTGCAGTCGGCGCCGGGGGGCACACATCATCCGCTCGACTCCATGCTCAACTACTCGATCACCGATCAGCTGGGCtacgagctgcagctggaggacTCGGAAACGGACGAGGAGGCTAAGCCGCCGGGCACGCCGGCCCAGTACACCTGCGGCATGTGCCAGCTGCGCTGCGCGCGCAAGTACGAGCTGCACCAGCATCAGCAAGCCATGCATCGGCTGGAGCGCATCGGCGAGGGCTGCGATCGATGCGTCTACAAGAGCGTCTCGCCGGATCTGATCGCCTACCATCGGCGCGTGCTGTGCGACAACACGGAGAAGCAGTTCAAGTGCGCCAGATGCGGCTACCGGTTCATGTGGGAGGCGAATCTGCTGCGGcacatgcagctgcagcatccCAGCGAGGAGGGGCAGCCGGAGGCCAGCTCCATGCCCGTGCCGGACATGCCCAGTGCCGCCGAGTGCCAGATCTTTCGGTGCGGCCAGTGTCCGCGTAAATATAATCGCAAGGATCGCCTGACGGCGCACGTCAAAAAGTGCCATGCACCGGGCGCGGCCAGCTCCACAGGCGATCCAGCGAAAGCGGTGAAAACGACATCCGCCGCCAAGCAGCAGAAGAGCTTTCTGTGCGCCTTCTGCGGCAAGGCGGTGAGCTCCTCCTCCAATCTCATCATACACATACGCCGGCACACCGGCGAGAAGCCGTTTAAGTGCGACTACTGCGACATGGCCTTCCCGCGCTCCTCGGACCTGCAGTGCCATCGACGCACCCACACCGGCGAACGGCCGCACATCTGCACCGTCTGCCAGAAGGCCTTCGCGCGCTCCtacaagctgcagcagcacatgCGCATCCACAACGGCGAACGGCCCTACAAGTGCACCTACTGCGAGAGGTCCTTCACCCAGTCGAACGATCTCACGTTGCACATACGACGCCACACGGGCGAGCGTCCCTACCAGTGCAACACGTGCGGCGAGCGTTTCATCCAGGGCACGGCTCTCAAGAATCATCGACTGCAAAACGGACACTACGAGACGGAGGTGGGTGAACTGAAGGATAACTAA
Protein Sequence
MLPSDICRTCALQVGCLLPLTTRTDKYANKSFNDMLHELTQNDPLLEHTDEGLPQHLCKDCLGKLEAAYAFVLQARQAQEQLLLQLRKGMQRQCLDEMPIDIGIGHIKTETDLDLPLGQTKSEATQQQDEMEVDVDGLKWQPESDSDSAQAAVEDRQDVDFKPKQLRRSARKAKPVTDSENEASSLNTKPVALKRRRGRPAKTETINEAGRHACGVCGKTFSWHRDMQRHARVHFEQAAYVCDSCGKCFLRKDKYMFHLRSHERRAAKCQALQLGGEWRFAERLYSSARLKRIECKLCGLKCQRIQELREHLASHVRVETLSTLSLEADVIRERFGSEQPPLDLAQIKQQVCTDIAEGRAQLENYCAVVNAYGYELGLSDSDEEPVGVAPPYQCPPCSLTFTRKHRLMRHTLEEHTQAERDAVGQRCDVCHIGFVCQRLLEQHQRTQCHNPLKRHSCPNCPGKFIWQRNLEQHACTLPEEEQPEQLQRVRQFQCCLCDAHLQSMAALRAHVLTHRDGRSGIDGAQQAAFFRTYHPDGLDCSPAELSARIAGDFEAQNYGRYFNASTDSGQELDFFASDTDTSDEESSVGARHACALCGESAVRLAQLLQHQRSQHSELQDRLPHLCEYCGLGFVAEALLQQHRRRVCAKRQAKFRCQDCGLHFYWLANYERHVQLRHETEGKAEAATETETEQLGASLSSKRQPAAAKLQCSECEKVFIWPKDLTRHRRLHQPQALAQYECAHCERKFHRKDGLKSHMRVHGEQLDAATTSEAPQVAPLLQRMPVVLTQLCRPNGCKQIRCMVCLSQHTKISDLRTHLASHQQALQFVEERASPESVASISRALYPELALPLEQPELIERIQSDVAAGAELDRFASITNEAGMELSLDSSETDSDSDSGEPAGSGRRYSCELCPLQVPRKHQLYAHQLERHTWQQASRVCGHCQARFVSEQLLEHHYRTLCRNAQRRFLCRKCPLRFRWRENLKLHMAVAHQEASVEQASLGIQPNGTHLLPVVSYDCGECNRSFKMQKDLTRHTLMHAQESSIYRCRWCARRFYRQANLLQHIERHGISAEQLPYAEALLNASRHPHGAKCVQCKVCEVSYPTIAALREHLQSAPGGTHHPLDSMLNYSITDQLGYELQLEDSETDEEAKPPGTPAQYTCGMCQLRCARKYELHQHQQAMHRLERIGEGCDRCVYKSVSPDLIAYHRRVLCDNTEKQFKCARCGYRFMWEANLLRHMQLQHPSEEGQPEASSMPVPDMPSAAECQIFRCGQCPRKYNRKDRLTAHVKKCHAPGAASSTGDPAKAVKTTSAAKQQKSFLCAFCGKAVSSSSNLIIHIRRHTGEKPFKCDYCDMAFPRSSDLQCHRRTHTGERPHICTVCQKAFARSYKLQQHMRIHNGERPYKCTYCERSFTQSNDLTLHIRRHTGERPYQCNTCGERFIQGTALKNHRLQNGHYETEVGELKDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00541909;
90% Identity
iTF_00588991;
80% Identity
-