Dsim008261.1
Basic Information
- Insect
- Drosophila simulans
- Gene Symbol
- -
- Assembly
- GCA_016746395.1
- Location
- NC:3109657-3111616[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.5 6.9e+03 -3.5 0.0 28 33 163 168 162 169 0.87 2 4 1.7e-16 3.4e-13 48.7 0.0 2 45 348 391 347 391 0.95 3 4 0.03 59 3.1 0.0 28 37 421 430 416 435 0.89 4 4 2.7e-20 5.3e-17 60.9 0.0 2 44 457 499 456 500 0.95
Sequence Information
- Coding Sequence
- ATGAATAATTTAAAGTGGATGGGCCACTCGTCCACGATAATGGACATCCAGCGTTCGCTGCGTAATGATAATCAGCACTGCGAGGTGGTGCTGGCCTCCAGGGACGGCGTTCGAGTGCGCGCCCATCTATTCGTGCTGAGCACTTGCAGCGAACTGATGCGCAACCTCCTGGTGGACGTTCCGCGCGGCCAGGAGGCAACCATAATGCTGCCCGACATCCGCGGAGATTTGCTGGAGTGCATGCTGTCCTTCATTTACATGGGCGAGACTAGCCTGCCCTCCACGTCGCTCCCCGAGTTCCTGGAGGCCATTAACCTCCTGGGCATCAAATCTGCCATCAGCTTTGAGTGCAATCCATCGGCTAGTCCACCCAGTGTCGATGTTGACCATTCGATAGCCGTGGAGTCGGCCAAGTCCATTACAGGGCTCCAAATCGCTGAGGCGGAGCTGCTGGACGACGAGGAAGAGCCACATCCGATGGTCTCCGTCCCAGCCACAACACTCGCGGGATCTCAGCACCAGCCCAGCCATTCCAGTCGGTCCTTGGAGTACATTGATGTCTACGAGCCGCCGAAGATCACCTACTCAATCGAGCACATGGACGGAAGTTCCAGCGGCAATCAATTTATACTCACCGAGAACACGGGCACTTTCACCATAACACAGTCAGCATCGAGTTTGTCCAAAATTGAGGCAGATGAAACGGCCACCAGTGGCGCTGAAGTGGACCTGGGAGATGATGACGTGGATGCGGACATTGCTGAGGATTCTGAGGAGCACGAATCACAAATGATAGAGGAGGAGTTCGCGTCACCCGATCCTCTTATGGAACTAGAAGCTGGTACTGAAAtggacgacgatgacgacgtgCACGACCAGCTTGTGGACGAGGAAATAGACGTTAAGCCCCGCAAGCTGGGCGGGGGAAAGACGCGTATCCGTCGCTCCATAAGTGCGAAGCCTGTCAAACGATTGCCCGATTGCAAGCCGACCCGAATCCAGCAGTTCGTAGCCCTGAAACGTGAGGTAAAAGACGACATCAATGATGCTTTGGATCTGGCGGCCGACGCGGTTATCATCGAGGGCTTAAGCCTACAAAAGGCCGCCGACCGGTTTGATATCTCCAAGACAGTCCTGTGGCGACGCGTGCGCACTAATCCCGCCTACATGCGAAACAACCGGGAACGACCATCCCTGCAAGAGGCCTACGAGCGACTGAAGAATGGAGATTCTTTGAAGAGCATCAGCACTGAGTTGCAAATCCCCATGTCCACGTTGCACCGACACAAGGTTCGTCTGTCCGCCCAGGGACGCCTGCCCAATTTCGTGTCCTGCCGAAAGCGCGACAATACGCCCAAGGATGAGCTGCGTGACAAATTAGCCAAGGCGGTGCATGCCTGCCTGAATGAGGGAATGTCTCAAAACCACGCGGCCAACCTCTTCGAGATCCCCAAGAGCACGCTCTGGAGACACCTGCAGCGACGCACGACGATCCAGAATAAAAAGATCAAGAAGGATTTGAAGGCCGAATACGGAGACGATATGCTAAACTAG
- Protein Sequence
- MNNLKWMGHSSTIMDIQRSLRNDNQHCEVVLASRDGVRVRAHLFVLSTCSELMRNLLVDVPRGQEATIMLPDIRGDLLECMLSFIYMGETSLPSTSLPEFLEAINLLGIKSAISFECNPSASPPSVDVDHSIAVESAKSITGLQIAEAELLDDEEEPHPMVSVPATTLAGSQHQPSHSSRSLEYIDVYEPPKITYSIEHMDGSSSGNQFILTENTGTFTITQSASSLSKIEADETATSGAEVDLGDDDVDADIAEDSEEHESQMIEEEFASPDPLMELEAGTEMDDDDDVHDQLVDEEIDVKPRKLGGGKTRIRRSISAKPVKRLPDCKPTRIQQFVALKREVKDDINDALDLAADAVIIEGLSLQKAADRFDISKTVLWRRVRTNPAYMRNNRERPSLQEAYERLKNGDSLKSISTELQIPMSTLHRHKVRLSAQGRLPNFVSCRKRDNTPKDELRDKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRRTTIQNKKIKKDLKAEYGDDMLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00605685;
- 90% Identity
- iTF_00504790;
- 80% Identity
- iTF_00596756;