Dsia011390.1
Basic Information
- Insect
- Drosophila siamana
- Gene Symbol
- -
- Assembly
- GCA_035047445.1
- Location
- JAWNPP010000081.1:923825-928678[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0017 0.11 12.9 0.6 1 23 141 163 141 163 0.98 2 13 0.00016 0.0096 16.2 1.9 1 23 392 414 392 414 0.98 3 13 0.3 18 5.9 1.4 1 23 469 492 469 492 0.92 4 13 0.0012 0.072 13.4 1.9 3 23 762 782 761 782 0.92 5 13 0.048 2.9 8.4 1.4 1 23 788 811 788 811 0.98 6 13 3.3 2e+02 2.6 1.3 2 23 848 869 847 870 0.85 7 13 0.0042 0.25 11.7 0.8 1 23 891 914 891 914 0.97 8 13 0.033 2 8.9 0.6 1 23 1132 1155 1132 1155 0.90 9 13 0.0012 0.07 13.4 4.7 1 23 1168 1190 1168 1190 0.98 10 13 0.0013 0.077 13.3 0.1 2 23 1196 1218 1195 1218 0.94 11 13 0.00019 0.011 15.9 3.3 2 23 1225 1249 1224 1249 0.90 12 13 0.12 7.3 7.1 0.5 1 23 1254 1276 1254 1276 0.95 13 13 0.0024 0.14 12.5 0.4 1 23 1282 1305 1282 1305 0.96
Sequence Information
- Coding Sequence
- ATGGCGAACAAGCGATTAAGAACGGATGACATGGAAGTGAATTACAAATTTGCGTGTCGCTGTTGTCTAAAGTCTGAGGCGGAATTCTTCAAGCTGGACTCTTTAACTGAGATTGGTGTAGACGACAATAATGAGAGCACAAAAATACCTCTAATACGTTTGCTATTATTCTGTATACGTACCGAGAATCGGCCGGAGCTGCCGCAATACATTTGCGTCGATTGCAGCAAGAGCTTGCAAATTGCCTACTTTTTCATACAAAATGCCTACAAGGCACATGAAATTCTCTGTCGCAAGTTGTGCCCTGGCAAGATGAAAGCGACAACGCGGTTCAATGGTCAACAACCCCTCGAGTTAAATCGCGGCGTCGCTAACCCAAACGCAGATAATGCGAAGACCTCAAAGGCTTTTTCTGTGCGCCACGAATGCAAATTATGTGGTGCCATTATCTATAATCGTATGGAACTTAAGCAGCATATCCGCATGCACACAGAGGAAACGCGGCACGCAtgcaaattgtgtaaatttgTAACACTTAAGGAGAGACAACTGCCCGAGCATTATAGAAAAGAGCATGGTTTGACGGCAGCTGAAATTGAACATCAGTTGAAATTAAGAAAGTCCTTGAATGCGACTTCGTCCTCTACAAATCCGACGCCTTCCACGGAAGCCAAAACAAGGGACGATGACCAATTTAAGGTGTGCACGCTGGAGGACATGGAGCTGCTGATACCCACTGTGCTTAAGCCTGAAGACTTTTCGCAGCCTCAACTAGACGCGGATCAACTACGTGATATTGAACTGCAATTGGCCAACTCCTTGGGTGTTGATCAGTCGGATTCGTCCGCGGTCTTGCTGGCCGATCCGACGATAGCTCCGGGCGACAGTTCCAATATGAGCGTAGGTGCCGAGTTTCTTGTCATGCCCGATGGATCCTTGCAGCAAGTCAATGATGGTGGTGTTGTCTTCGAATATATTGATGATAGCAAGCCGCCTGTTGCCAACCCTACTCCAAACATAAGCTTACAAAACTTACTGAGCGATTCAAAGCCAGATGTAAACTGCAGTGCAATGGATATTGACATGAATCCTATGGTAGGTGGAGATTCCCTGCCTCAAATCACAGTGAAACCAAAACTCAGGCCAGGTCCAGGATCGATTAGCGTCATGAAACACAAGTGTAATCTCTGTCCCAAAATGTTCCCGACAATGGCACGCCTTAAATCTCATCAATTAACACATAGTCATCTGCCCAAGTTCTATTGTGATCAGTGCTCCTACCACTCACTACGGAGCTTCGATCTTATCCAGCATTATACGGAGGAGCATAAGTCATCAATTGGCGAGAGCAAAACTCACGTTGAGAAATCCTTGCAATCGTTATCGACGGACAGAAGTCGCATCTACTCCTGCGACATGTGTTTATTTGAGACCCCCAGCAGCGCCCATCTGCGATCACACTATAGTGATAAGCATATGATACAACCAAGCGATGTGCAACTACGCCCCAGCTGGACTTGCGACACCAAGGATAAGGGCAGCAGTCCGTCTAATCTTCCGATGGGTATTACATGTATCCATCTACACACATTACGTCAGCAGCTGAAAATACCAGCTGAAACAACCGCAACCACAACGAGTACAACAACGGGGCAGCAACTACATCCAGcacaagcaacaaccacagctgTGGTAACGCCCGCTGGTGATATAAATGTGGTTGTGGATGCCACTTCGTTATTCTATGCTGCTGGTGCAGCTCCAACGACTGAATCGACCACCACAACGACATCAGCAGAACATACGGTCGATGTTTCTGGAGCATTTGCAATATTTCCCGATCAATCGTTGACGAAATCAATGAGAACAACACCGAAGAAGGAAGAATCAAGTGGCATTGTGCCTGGTGTTAGTGTTTTGGCTCCTGCTGGTGGCACAGCAAATCCAAACAATTCCATATTCGGAGACATGCAAGATTTTATCGATAACACCGATGTCGCAGCCATATGCACAATACCTGCCGACGATATGCCAGTCGTTGATGGCGATGATATTGTTATTGATAACAATAATATGAGCTTGGATTTCGATACTGAGAACCTGTTTGATGACTTCGAAGAGGACGTTGAAGTAGGCGAAGATGAGGACGAGGATGACCCCGAAAATGAAGATGAGAATGAGAACAatgatgccgctgctgatcAAAATTTGTTACTCACtagcgatgatgatgatgtcgaTGACTTTGATGACGAGCAATCGAAGCATCTTCAGAAACCATATTGCATCTATTGTAACAAAAAGTTTACCAGCCAATACAAGTTCGAAAATCATATGTTCGTGCATCGCGGACTGGCGCCTTATCGATGTGAGCTCTGCACGAACCTTTACAACATGAAGCGTCTGCTGATACGGCATTACAAAACTGTCCACAAACGCATGCCTACACGGGACATGGTTCAGGCAAAGGGTGACAAGGTTGCCGTAGAGCGCACGGCGATCGAGAAGCTGAACGTCGGCGTGGACAAGCCTCCCATACTGATGTGTGCCAAGTGTCCTTTTGAATGCGAGCTGGAGGGTGAGATGCGAAAGCATCTGAATGCTCATCACGGCATCAATGATGGCGTCTCTGCGCATGCTAACGAAGTGTTCATTATACGCAAACTGCCTTTTGAGTGCCCGCGCTGTATTCGTTCGTTTGCCGCGAAACGCACGCTTACTCGTCATTTACAGCGCAGTCATTTAGTAGACACAATCATTGAGATGCAGGCGCCTCAATTGACAACAAGCTCGGCAGAAACAACAACCATGTTGACGCCTTCAATCGCATTGCCGAAGAATGCACAGCCCATCATTggtgacgctgacgctgacacTGATGGTGATGGCTATGAAAAATGCGACATCGTGATAAACAGTGACACAGGAATTGAAACGGATAATGAAGATATTGACACAAAGTCATTGACCTCAACGCCAACGTCAGGatttgcaacaattacaacCACAACCGACATAAATGATGCGCAAGTCAATGAAAAAACATCGGCAGAATCATCGCCTGTAACTGAAACTTCCATAATAGCATCTCAATCACCAACATCCCCGttcacatcagcagcaaacacagcagTCATTGAGAAAACACCAaccacagcaacgacaacagcagtagAGACATCAACACTCTTTCCAACGCCCACGCCATTTGATTTTGATCTGGATTTCATTGAAAGTGGTGCACATGGTAATCCGCTTAATagtaacaacgacaacttcaATGTTTTGCCCATCGCTCGGCAATTGCTAAATGGCACCGATAAACTACTGACTGCAGCGTTAGAGCCTTCGCCAATTAAAGATCTCCGCTCACGTTTGCCCCAAACTCCGATTTTTGTTTGCAAGCAATGTAACCAGACATTTGATGAGCTGAGTAAAATGTTGCAACATGAGTTGGAGCAACATTCCAGCGGAACTGTGTCGCCGCGCAACATCTATCAACATCAGTGTAAAGTCTGCAAAACAACGTATCGGACAGTGACGCTGTTAAATTATCACATGAAAAGACACGCTCCGCGCAAAGTTCAGTGCAAGGTGTGTCCCAAGGAGTTCATATCAAACACGGAACTGGATCAACACGTGGACTCGGAGCATCGTAGAAACATGCCTCTGAAGTGTGGCATCGATGGCTGCgataaaacttttaattacaaGCATCATTTGAAGCGACATCAAACGGCCTCGCATACACCTGTACAATATTTATGCCCCGAGTGCGGTCGCGATATGTTAACCAGTCTCCATCTAAGGAATCACATCAAAATTCACAAGGGAACACATTCCTACAAGTGTCCCAAGTGCGTTCGTACTTATATACGACTCGGACCCTTTCAAAGACATGCACTGCGCGAACACAAATGGGATCTCACTGAGgatgaaatcaataaaatgtataGCCTTAATGAATCAACTCCTTTGATGAAAGTAGGCGAAGGAAGGTTGCTTGATGTTGAAAAAGATACGTCAGATTAG
- Protein Sequence
- MANKRLRTDDMEVNYKFACRCCLKSEAEFFKLDSLTEIGVDDNNESTKIPLIRLLLFCIRTENRPELPQYICVDCSKSLQIAYFFIQNAYKAHEILCRKLCPGKMKATTRFNGQQPLELNRGVANPNADNAKTSKAFSVRHECKLCGAIIYNRMELKQHIRMHTEETRHACKLCKFVTLKERQLPEHYRKEHGLTAAEIEHQLKLRKSLNATSSSTNPTPSTEAKTRDDDQFKVCTLEDMELLIPTVLKPEDFSQPQLDADQLRDIELQLANSLGVDQSDSSAVLLADPTIAPGDSSNMSVGAEFLVMPDGSLQQVNDGGVVFEYIDDSKPPVANPTPNISLQNLLSDSKPDVNCSAMDIDMNPMVGGDSLPQITVKPKLRPGPGSISVMKHKCNLCPKMFPTMARLKSHQLTHSHLPKFYCDQCSYHSLRSFDLIQHYTEEHKSSIGESKTHVEKSLQSLSTDRSRIYSCDMCLFETPSSAHLRSHYSDKHMIQPSDVQLRPSWTCDTKDKGSSPSNLPMGITCIHLHTLRQQLKIPAETTATTTSTTTGQQLHPAQATTTAVVTPAGDINVVVDATSLFYAAGAAPTTESTTTTTSAEHTVDVSGAFAIFPDQSLTKSMRTTPKKEESSGIVPGVSVLAPAGGTANPNNSIFGDMQDFIDNTDVAAICTIPADDMPVVDGDDIVIDNNNMSLDFDTENLFDDFEEDVEVGEDEDEDDPENEDENENNDAAADQNLLLTSDDDDVDDFDDEQSKHLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIRHYKTVHKRMPTRDMVQAKGDKVAVERTAIEKLNVGVDKPPILMCAKCPFECELEGEMRKHLNAHHGINDGVSAHANEVFIIRKLPFECPRCIRSFAAKRTLTRHLQRSHLVDTIIEMQAPQLTTSSAETTTMLTPSIALPKNAQPIIGDADADTDGDGYEKCDIVINSDTGIETDNEDIDTKSLTSTPTSGFATITTTTDINDAQVNEKTSAESSPVTETSIIASQSPTSPFTSAANTAVIEKTPTTATTTAVETSTLFPTPTPFDFDLDFIESGAHGNPLNSNNDNFNVLPIARQLLNGTDKLLTAALEPSPIKDLRSRLPQTPIFVCKQCNQTFDELSKMLQHELEQHSSGTVSPRNIYQHQCKVCKTTYRTVTLLNYHMKRHAPRKVQCKVCPKEFISNTELDQHVDSEHRRNMPLKCGIDGCDKTFNYKHHLKRHQTASHTPVQYLCPECGRDMLTSLHLRNHIKIHKGTHSYKCPKCVRTYIRLGPFQRHALREHKWDLTEDEINKMYSLNESTPLMKVGEGRLLDVEKDTSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00509347;
- 90% Identity
- -
- 80% Identity
- -