Basic Information

Insect: Drosophila siamana
Gene Symbol: RIM101
Assembly: GCA_035047445.1
Location: JAWNPP010000151.1:2319127-2321355[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0012 0.074 13.4 4.6 2 23 214 235 213 235 0.97

2 12 0.0078 0.47 10.8 3.8 1 23 241 266 241 266 0.94

3 12 4.6e-05 0.0028 17.9 0.7 1 23 273 298 273 298 0.95

4 12 0.001 0.062 13.6 3.8 1 23 306 328 306 328 0.97

5 12 5.5e-05 0.0033 17.6 0.8 3 23 337 357 335 357 0.98

6 12 0.037 2.3 8.7 0.9 1 23 363 385 363 385 0.97

7 12 0.00071 0.043 14.1 2.0 1 23 391 414 391 414 0.98

8 12 0.0027 0.16 12.3 3.4 1 23 420 442 420 442 0.96

9 12 0.0015 0.09 13.1 1.7 1 23 448 470 448 470 0.98

10 12 1.3e-05 0.00077 19.6 0.2 3 23 553 574 551 574 0.95

11 12 0.069 4.1 7.9 4.1 1 23 580 602 580 602 0.94

12 12 1.5e-05 0.00093 19.3 3.8 1 23 608 630 608 630 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0012	0.074	13.4	4.6	2	23	214	235	213	235	0.97
2	12	0.0078	0.47	10.8	3.8	1	23	241	266	241	266	0.94
3	12	4.6e-05	0.0028	17.9	0.7	1	23	273	298	273	298	0.95
4	12	0.001	0.062	13.6	3.8	1	23	306	328	306	328	0.97
5	12	5.5e-05	0.0033	17.6	0.8	3	23	337	357	335	357	0.98
6	12	0.037	2.3	8.7	0.9	1	23	363	385	363	385	0.97
7	12	0.00071	0.043	14.1	2.0	1	23	391	414	391	414	0.98
8	12	0.0027	0.16	12.3	3.4	1	23	420	442	420	442	0.96
9	12	0.0015	0.09	13.1	1.7	1	23	448	470	448	470	0.98
10	12	1.3e-05	0.00077	19.6	0.2	3	23	553	574	551	574	0.95
11	12	0.069	4.1	7.9	4.1	1	23	580	602	580	602	0.94
12	12	1.5e-05	0.00093	19.3	3.8	1	23	608	630	608	630	0.97

Sequence Information

Coding Sequence: ATGAATGAGGACACTGCAGGCTTGGCCCAAAAACTATGCCGCACTTGTTTAACAGATCTACAGCCCGAAGAAGCTTTCGATCTGTTTCTCGTTCACGGCCTAGCCAAGAAATTGTGTGTTTGCACTTCCTTGGCTGTGGAGCACCAAGATGGATTTCCCACAAATATCTGCCTCGCGTGTTACAGTCGTCTAAACGACTTGCACGACTTTCAAGCACAATGCGTGGAGTCGGTGCAAAAGTTCAGAGAGATGCTGACCACCAACTGCTTCATCATTCGTACGATTCCCGAAGACAACTTCAACGTGGTAAATGcagcggagcagcagcaaactgagTTTGTTGCCGAGGAGCATACACACTTTGATCCCTTGCTGAAtagtaaaattgaaattgaaaacgagGAGGATGTTTTCAAGATGATAGAAGATGTCGATAAGGAATccgaagaagcagcagaaattGAGGAAGAGTTCATTGACGAGCAAGATGAGGCCAGCGCATCGGATAGCAGCGAGTTCGATGAGACGCTTCCGTTGTCGCGGCTCCGAAAGAAGCTCAATCAAAAAAAGGATGCGGATGAACCAAAACCCAAACGCAAGCGTTTGCCGCCCGCGGAGCGAGAGCGACATCGTTTGATCGAGTGCCACATTTGCAGGCAGAAGTTCAAGAAGGCGCAGAACTACGAGGAGCACATGAAACACCACAATGATCAGCTGCCCCACCAATGTCCCGTGGAAAGCTGTAAGCGTGGCTTCACCACAGAGACGGGGCTGCGTCATCACATGGAGCACACTCATCCCGAGCTGTGCAAACTGCATCCGTGCACTGTCGAAGGCTGCGACAAGAAATTCCCACAGACTCGCATGCTGACGCGCCATTTGCGAGTGGAGCACAACATTGCCAAGCCCGAGATACATCCGTGTTCCGGCTGCAACAAGGTGTTCCGCTGTCCCATGGCGCTGAAGAAGCACATGTACAAGCACACGGGCGAGGAGCTGCCATTTGGGTGCAACATTTGCCAGAAACGCTTCAGCGTCAACACCGAGCTACGCGATCATCTACTGCGCCACGCGGGGATCAAAAACTTTGTGTGTCCATACTGCGGCGTGGGCAGAACCACCAAACAGGAGTGTGACAAGCACATTCTGACGCATACCAGGGAAAAGAAGTTCAAGTGCGAGCAATGCGaatatgccacacacaacaagcaGTCGCTGACGAAGCACGTGCGTGTGGTGCACTTGAATATACGCAATCACCCATGTCAATATTGCGACAAGACGTTTGCCAATGCGTATGCCTGCCGGACGCACGAGAGATTGCACACGCGGGAGAGCTGCTTTGAGTGCAACATCTGCGGCATGAAATTCCTGTTCGAGAAGCGTTTAACGCGTCACTTGAAGACGCATGAGAAACGCGATAAACCGGTTgacgatgaagatgatgaGGGCGGCGCGAAGCCGGAAGCAGCCGTGGAAGTAGCGAGGGAACCCGCAAAGGTTGCGCCTGAAATGCCGGCGAGGTCAAGGGATCCGCGACGGGTTGAACTTGTGGACATGGCACAATTGGCTGGCACCGCTGTTAATCCAATTCCTTCAGTTACAGTGCCCGCCTGGCCGCATGTCAATTTCACCAAGAAGGAGGGTCAAATCATCTGTCCGGAGTGTGGCAAGGCCTTTAACCATTTGGCGAACATGAAACTGCACTACAAGGTGGTGCATCAGAAGATCAAGGACTACGCCTGTCGCTTCTGCCCCAAGCGCTTCAGTAAATCGCAGTATCTGAAGTGTCATGAGAATATTCACACAGGCGAGACGCCATACGCTTGTCAAACCTGTGGCAAGAGTTTCAAGCATTATGGCACGCTCAGCAAACATAGGCAATCGCACAACCGGCCACCCAAGGAGCCCAAGGCCCCAAAAGAACCATTGGTCAGGAAGCGTTTCTATCAGGGGCCCAAAATCAAACTGAACACACAGCCAGCCAAGAACTATGAACAGTATGAAGACCCAGCTGCCGAacaggcagcggcaacggctcAATTGGTTGCTCAGCAGCTGAACGAGAGTGCCGCCAAGCTGAAAGCGGAGGCAGAAActcaaaaaattcaatcagcGGCTCAGGAGCAGCTCCAGAAGCTGCAGGAGCAGTGGCAAAGCGAGCGGGTTTCCTACGATACTTTTGCGAGCAAAGGCGTTAGCATGGATATACCCAAGGATCACGTATAA
Protein Sequence: MNEDTAGLAQKLCRTCLTDLQPEEAFDLFLVHGLAKKLCVCTSLAVEHQDGFPTNICLACYSRLNDLHDFQAQCVESVQKFREMLTTNCFIIRTIPEDNFNVVNAAEQQQTEFVAEEHTHFDPLLNSKIEIENEEDVFKMIEDVDKESEEAAEIEEEFIDEQDEASASDSSEFDETLPLSRLRKKLNQKKDADEPKPKRKRLPPAERERHRLIECHICRQKFKKAQNYEEHMKHHNDQLPHQCPVESCKRGFTTETGLRHHMEHTHPELCKLHPCTVEGCDKKFPQTRMLTRHLRVEHNIAKPEIHPCSGCNKVFRCPMALKKHMYKHTGEELPFGCNICQKRFSVNTELRDHLLRHAGIKNFVCPYCGVGRTTKQECDKHILTHTREKKFKCEQCEYATHNKQSLTKHVRVVHLNIRNHPCQYCDKTFANAYACRTHERLHTRESCFECNICGMKFLFEKRLTRHLKTHEKRDKPVDDEDDEGGAKPEAAVEVAREPAKVAPEMPARSRDPRRVELVDMAQLAGTAVNPIPSVTVPAWPHVNFTKKEGQIICPECGKAFNHLANMKLHYKVVHQKIKDYACRFCPKRFSKSQYLKCHENIHTGETPYACQTCGKSFKHYGTLSKHRQSHNRPPKEPKAPKEPLVRKRFYQGPKIKLNTQPAKNYEQYEDPAAEQAAATAQLVAQQLNESAAKLKAEAETQKIQSAAQEQLQKLQEQWQSERVSYDTFASKGVSMDIPKDHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00472517;
90% Identity: iTF_00589704;
80% Identity: -