Dser002309.1
Basic Information
- Insect
- Drosophila serrata
- Gene Symbol
- ZNF131
- Assembly
- GCA_002093755.1
- Location
- NW:475926-514820[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.16 11 6.5 2.5 3 23 284 306 282 306 0.92 2 15 0.35 23 5.4 2.3 3 21 448 466 446 470 0.91 3 15 0.092 6 7.2 0.6 2 23 492 514 491 514 0.91 4 15 1.2 80 3.7 2.6 1 23 531 554 531 555 0.94 5 15 0.2 13 6.2 0.3 1 21 559 579 559 583 0.91 6 15 0.052 3.4 8.0 0.2 2 23 629 651 628 651 0.91 7 15 0.13 8.6 6.7 0.2 1 21 656 676 656 677 0.94 8 15 4.2 2.7e+02 2.0 2.4 1 23 699 721 699 721 0.92 9 15 0.00075 0.049 13.8 4.3 2 23 734 754 733 754 0.97 10 15 5.2e-06 0.00034 20.6 3.1 1 23 760 783 760 783 0.97 11 15 0.0043 0.28 11.4 1.7 1 23 804 826 804 826 0.98 12 15 0.7 46 4.5 0.9 1 23 834 858 834 858 0.94 13 15 0.14 9 6.7 3.1 1 23 863 888 863 888 0.96 14 15 0.0044 0.29 11.4 4.5 1 23 899 921 899 921 0.97 15 15 0.00077 0.05 13.8 3.1 1 20 927 946 927 948 0.95
Sequence Information
- Coding Sequence
- ATGAATACGGACGATCTTGAGGACACCCACCTGTGCATCAAGTGCAATGCCACGATTATGGGTCTCACCAAATACATTGAGCACCGGAAGCGAAATTGCCTGATGACGGTGAAGCCAGAGGGTACACCGGCCACAGATGGATCAGCAACCAGTTCCACTTCCACTCCAGTGGTGTCCCAGACGATCATCCGTCGCAGCAGTCATCTGGATCACACCTACGATGGCTTTCACTTCGCAGAACCGGAGGCCCCAAGTAGTTACCTTCGGAAGACAGCGGCCAGTCATGGGGGAAAGGCCTCTAAGTCTCTGACTGAAGCCTACGATCTCCCCTACGAGTTGGGAGCTGACCTGTTTTTCTCCTCGCTGCAACTGCAAAGTGTTTCCACTGGTGGCAAGACTGGATCAGTGCCTCGCCAGGATAGAGCCAAAGAGGAGTCCTGGACAGCCCCTAGCGGCGATCCTGTTCTAAAAGCAGTGAGGGGATACCCTGAGGCTGTATTCAACTTTGACCATGACTCCCCAGAAGCGAGTGACgaggaggatgatgatgaagaagcCGACGACTTTGATCCAGaagaggatgaggaggatTATAACGTGAGCCGTCACTCCCCGCCCACAGTGCCCGCCACCCACACTGGCGGTAAATGGAAGCCCGAACACCGTCCCCAGCTCCGGCACCCGCATATCGAGAGAATATCACCCAGCTGGGATGAGCCACCCGAGGAGGCGTACACTCATCCTCCGGCGGATCACACGAAGGGCAAGTGGGTGCCGGGCAGCAAGCAGCTTGAGTACAGGGAAAACATAGACCTCACGAAGCTGGAACAGCCGGGAATCAGTTACTGGTGCAACATCTGTTGCCGGCGTCTCAAAAGTCGGTCCAACTACGAGCAACATTTGAGGAGTGGCTACCATCTGAAGAGGGCAGATGCAGAGTGTCAGTTGGAGCAGGCTACCCTCGGAGAAGAACTCAACCTGAGCAAGGACTTTGCTGTGGAGACCAGCGAGAAAAATgaggagctgcagctgcaTCCTGCCAAGAGACAGCGGAGATCGAGTCTCCTGCGATGCGATCTCTGTCGCCGCAGGATGCCCAGGCATTTGATGGGCAAGCACTTGATATCCCATTATCACTACCGTCGCTTGCAGCAACAGAATCCGCTAAGGAGGCAATTATCCCTGCAGACCATTCTCAACCACATGGGCAGCATTGTGAGGCAATCGCCATTCCAATGCCTTCCGTGCCGATTCTACGCCAATACAGAGAGTGCCTTCCTGCATCATTGGCAGTCTCACGAGCATTTTGAGTTAACCCAGCGTCTGGGTGGATCCTTTTGGTGTGGATACTGCCAGTTTGAGTGCACTACCAATGAGTCCATGTGGCGTCATCTGCTCCACGCATCTCACAAGGAAGTGCTCTTAGTCCTGAATCGATCGGTACCCATATGTATTGCCCAAAGGCGGTCCATCCAGTGTCCGTATTGTGGACTGAGCGTGTTGTACAATTTCCAACTTCGTCACCATTTCGCTTCCGACCATCCCGGCCTGGCTCCTTCTGGAACGGCAGCTGATGAATATCAATGCAGATTTCGATGCGGATTGTGTGGAATACCACAAAAGTCGCGATTGGCACTTCAGCGTCACGAGAAGCACAAACATCACCTGGCAAGGTACTATTGTGCCATTTGTCGCTTGAACTTTGACACACCTTTGCAGGCGCGACGTCATCGGAGTTTGGTGCAACACAAGCAAAGAGCACGAACCAAGGCACCTTCCTCCACATCCCGACCGGATAAGGAAATAGAGCACATGCTCAGGGAAGTGCTGGAAGAACCCATAGCCCATAGTCCGCCTGCCAAAAGGAATAAATTGGCCGAAAAGAAATGCTCAAATTGTACGGAAGTTTTTGATTCTCCACAAAGGTTGGCTCTGCATCGAGCTGGAGTGCATCCAGACGACAACCATGTGTGCCTCAGCTGCGGATCGAGCTTTCAGTCTGCCCAGGCCCTGGGTAGGCACACACGAAGCTGTCAGCCCCTGGCCAGCACCTCAGGTGCCTCCAAGCCACCTGTGACCAATACCTCATCCTCTTACTCCTGCGACAAATGCAGTTTCCAGTCGCAATATGAATCCGATCTTATTTACCATCGCTTCTTTCACATGAGACCGGGAACGATAGGAAGAGACGAGTTGCTGCAGTGTCCGCTCTGTCCCAAGCACTTCAAGAAGCACTCCCTCAGAGCTCATCTCAGAAACCACACAGATGAGAAGATTTTCGAGTGCCCAGAATGTCATCAGAAGTTTGCAAGGAGGCACAACCTCAAGAACCATGTGGCCACCATGCACGGTCAGGGAAAGGATACTCATAAACCGAAGGAAGATTCCATAAAAGTGGCGAAGCCCAAATATCAGTGCGGAACCTGTGCCAAAGTACTGTCCAAAAAGCATTCCCTTAAGTTGCACGAGTTGAGTCACTCCGAGGGAGCAGAGCGAAGCTTTCGATGCCATTTCCCAGGCTGTTCGTATGCAGGCTTATACCAGGAAAACCTCAAAACCCACCTCATCTCCCACTCTCAGGGTAGGCACAAGTGTGACCGGGAAAACTGCAGCTATGTCGGGAAAAGTGAACTACATTTGAAGAGGCACCTCAAGTCAGCCCATTCCCGGGAGGGGGACGACGCCCGGGAGTGGTTCTCATGCGATCAGTGCGAGTTCAGGACCCGCACCAAGGGCCACCTCCGCCGGCACTCGCTTCGCCACTCGGGACAGAAGCCCCACCAGTGCCCCCACTGCGACTTCCAGTGCAGCACCATCGATAATCTGCGCAAGCACATCGTCAAGACGGGCAAACATCCCGGCAAATTCATCTACGAATGCCACAAGTGCTCGGATCAGGCGCCAAATGAGATCTTCAAGAGCAACACATTCAAGGAATACCAGAAACATTTGGCCACTCACAAAATGGATTGA
- Protein Sequence
- MNTDDLEDTHLCIKCNATIMGLTKYIEHRKRNCLMTVKPEGTPATDGSATSSTSTPVVSQTIIRRSSHLDHTYDGFHFAEPEAPSSYLRKTAASHGGKASKSLTEAYDLPYELGADLFFSSLQLQSVSTGGKTGSVPRQDRAKEESWTAPSGDPVLKAVRGYPEAVFNFDHDSPEASDEEDDDEEADDFDPEEDEEDYNVSRHSPPTVPATHTGGKWKPEHRPQLRHPHIERISPSWDEPPEEAYTHPPADHTKGKWVPGSKQLEYRENIDLTKLEQPGISYWCNICCRRLKSRSNYEQHLRSGYHLKRADAECQLEQATLGEELNLSKDFAVETSEKNEELQLHPAKRQRRSSLLRCDLCRRRMPRHLMGKHLISHYHYRRLQQQNPLRRQLSLQTILNHMGSIVRQSPFQCLPCRFYANTESAFLHHWQSHEHFELTQRLGGSFWCGYCQFECTTNESMWRHLLHASHKEVLLVLNRSVPICIAQRRSIQCPYCGLSVLYNFQLRHHFASDHPGLAPSGTAADEYQCRFRCGLCGIPQKSRLALQRHEKHKHHLARYYCAICRLNFDTPLQARRHRSLVQHKQRARTKAPSSTSRPDKEIEHMLREVLEEPIAHSPPAKRNKLAEKKCSNCTEVFDSPQRLALHRAGVHPDDNHVCLSCGSSFQSAQALGRHTRSCQPLASTSGASKPPVTNTSSSYSCDKCSFQSQYESDLIYHRFFHMRPGTIGRDELLQCPLCPKHFKKHSLRAHLRNHTDEKIFECPECHQKFARRHNLKNHVATMHGQGKDTHKPKEDSIKVAKPKYQCGTCAKVLSKKHSLKLHELSHSEGAERSFRCHFPGCSYAGLYQENLKTHLISHSQGRHKCDRENCSYVGKSELHLKRHLKSAHSREGDDAREWFSCDQCEFRTRTKGHLRRHSLRHSGQKPHQCPHCDFQCSTIDNLRKHIVKTGKHPGKFIYECHKCSDQAPNEIFKSNTFKEYQKHLATHKMD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00485492;
- 90% Identity
- iTF_00524745;
- 80% Identity
- -