Basic Information

Insect: Drosophila serrata
Gene Symbol: salm
Assembly: GCA_002093755.1
Location: NW:312126-320987[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2e-06 0.00013 21.9 1.7 1 23 345 367 345 367 0.98

2 8 2.8e-05 0.0018 18.3 3.5 1 23 373 395 373 395 0.98

3 8 1.9 1.2e+02 3.1 2.5 5 23 631 649 628 649 0.84

4 8 2.9e-08 1.9e-06 27.7 0.2 1 23 655 677 655 677 0.98

5 8 0.00086 0.056 13.6 0.9 1 23 687 709 687 709 0.98

6 8 0.043 2.8 8.3 0.1 2 23 916 938 916 938 0.96

7 8 9.3e-06 0.0006 19.8 5.0 1 23 1088 1110 1088 1110 0.96

8 8 7.4e-08 4.8e-06 26.4 0.7 1 23 1116 1138 1116 1138 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2e-06	0.00013	21.9	1.7	1	23	345	367	345	367	0.98
2	8	2.8e-05	0.0018	18.3	3.5	1	23	373	395	373	395	0.98
3	8	1.9	1.2e+02	3.1	2.5	5	23	631	649	628	649	0.84
4	8	2.9e-08	1.9e-06	27.7	0.2	1	23	655	677	655	677	0.98
5	8	0.00086	0.056	13.6	0.9	1	23	687	709	687	709	0.98
6	8	0.043	2.8	8.3	0.1	2	23	916	938	916	938	0.96
7	8	9.3e-06	0.0006	19.8	5.0	1	23	1088	1110	1088	1110	0.96
8	8	7.4e-08	4.8e-06	26.4	0.7	1	23	1116	1138	1116	1138	0.98

Sequence Information

Coding Sequence: ATGTGTTCAATATTTCGCAACCGCATCAATTACCGTGGGACTGGCGGCACCAGGAGCGGCAGCGGTGAGCGGGACAGGGATCGAGAGCGGGATCGGGATCGAGATCGGGACAGAGACCGAGACCGGGACAGGGATACCCTGTTGGCCAAGGAGCTGGATGCGGATAGCAATAATAATGGCACCGAGCCGCAGGTGGAACCGGAAATGGAAGCAGCTCCCGACTGCTCCGACACGGAACGGGAggcggagcaggagcaggaacaggagctggACAACAGCAATGAGGCGCTCGATCTCTCGGTGATCTCGGCCAGCGGCCGGGGATCACTGCCGGGCAGTGGTCACGTCTCGCTGGAGGCTTTACAACATACCAAAGTGGCGGTGGCCCAGTTTGCGGCCTCAGCGCTGTCCggtggaggaggcggaggcgtCGGTGGTGACCACCAGTCCGCCGACCTGGCCATGGTGCAGTCCACCATCTTCAATGTGCAGCGACAGCATCTGATGCAGCTGCAGCTCATCCAGCACCTGCAGAGTCAATTGAAAAGGGCCGAGGCTGTGGCCCTGGGCAGGCAAACCCAGagcgatgaggaggaggatgaagcGGAGCCGGAACCAGAACGGGAGCTAAAGCAGGAATCAGCCAATGGTCTGAAAGAGGAGATccaagagcaggagcaggaggaggaacaggaacaggaactggaacgggaacgggagcgTGAACGGGAGCTGGAGGAGAGTTCAAAGACTGACAAGGCGACGACTGAGGAGAGAAGAGTGCAGGCGGAGATTGAGGGCTCGGACTACCAGCCACTGATGTGCGACATCAGCTCGAGCCTGGCCTCGAGCATCATCACCAACCATGATCCCCCGCCGGCTCCCAATGAGCCCAACTGCCTGGAGATGCTGCAGCGCCGCACGGAGGAGGTCCTGGACTCCGCCTCCCAGAGCCTGCATGCCGCCCAGCTGCAGGAGGAGTACTCGGAGTATGCCTCCAAGGAGGCCCAGAGCCGGGGCGAGATATTCAAGCATCGGTGCAAGTACTGTGGCAAGATCTTTGGCAGCTACTCCGCCCTCCAGATTCACCTGCGTTCGCACACCGGGGAGCGGCCCTTCCACTGCAACGTCTGCGGCAGCAAGTTCACCACCAAGGGCAACCTGAAGGTCCACTATCAGCGGCACACCCAGATCTTTCCGCCCATGCTGCTGCCTCCGGGTGTGGCACCCAATGTGGGGCACACATCTGGTCAGGCCCAGGCACCGGGACAGGGTCAAATCCCAGCTGAACAGTTCCCCATGCGACTGCCCTTTGTGCCGCCAGCGATTCCTTGTAGCCAGGAGCAGGTGCAGCATCAGGCGGAAGAGCAGGAGGAGATCAAGACGGAAATTCCAACTCAGCAGGCGGAAGATCTCAGCAAGCCGGCGGTAAAGGAAAAGGAGAAGGGTCAGGAGAAGGCACACTCGCCCATGGAGAGTGTCAAGACCCCCAAGGCAGTGTCACCAGAGGTCAAGCCCAGACCGCCACCCATTCCGGCTGAACCCTTACCCGAGAAACCCGAAAAGGAAACTCCTCCCAAACCCGCAATGACTCCATCTCGGAGGAATGGTTCTGTACGCAAGAGACAAACAAGCAGCGCTGGAAGTCCACCGCAGGAGGACAGGGAACGGGATCTCGCCGAGCACCTGCACATAGCCAAGTTGGTGAGGCGCTCCTCCTCTAGCCGAGAGTCCCAGCAGCCGGCCGAGTATTCCCTCGCCCAGATGGAGCGCATCATTGACAAGTCCTGGGAGGATCTCATCGAGATCGACAAGACATCGGAGACCTCgaagctgcagcagctggtGGATAACATTGAGAATAAGCTGACCGATCCCAATCAGTGCATCTTCTGCCAGAAGGTCATGTCCTGCCGCAGCTCCTTGCAGATGCACATTCGCACCCACACCGGCGAGCGACCTTTCCGCTGCAAGATCTGCGGGAGGGCCTTTGCCACCAAGGGTAATCTCAAGGCACACATGAGTATACACAAGATCAAGCCACCGATGAGGAGCCAGTTCAAGTGTCCAGTGTGCCACCAGAAGTTCTCCAATGGGATCATCCTGCAGCAGCACATTCGCATCCACACCATGGACGATGGCAGCGGTGGTCAGGGAGGTGCTCCACCAAATCCCGAGGTTGAGCGGTTGGGTATTGAAGATCAAAACTCGAACAAGTCCATGGGCACTTCTGATACCCTGGATTTCTCTACAACCATTTCGGATCATTCGGGCCAGAGGTCTGAGTCCTCGCAAGGCGGCGATTTCGATGAGTTCATGACCATGGACAGTACCGATGACTCCAGGGATAATTCGAGTGCGGCCACTGCCACGCCCCATCCTctggagagggagagggatagGGAGAGAGATCGGGAGAGGGAACGAAGGCCACAAAATGGGTTCGATGAGAGATCTCACTCTAATCCCGATCTCGCTGGAGGTCGCTCTGAGAGCGGAGAGATGCCCGCCATGGATCTATCTTCGCCATCATCAGCCTCTGGTCGCATTTTCGGTGCTGGAATGGTCAATGGAGCGGCAGGTGGAGGAGGATCAGGAATGCCCATGCTGGGAATGCCCATGCCCCCAAACCTACTCCTCATGGCGGCTGCCCGAGAGGAAATGCATGCCTTGGGTCATGCCCATGAATTCCCGCTGCTGCCCTTTGGTCCACTTGGATTTATGGGCCTGCACCCGCCCCCCAATGTGTGCAATCTGTGCTTCAAGATGCTGCCCAGCCTGGCTGCCTTGGAGAGTCATCTGCAGAGCGAACATGCCAAAGAACCAACAGCGGGACATGCCCATCGCACCCACTGCAATGATGCTGGAGCACCATACGGTGCCAAGCTCACTCTCAATCCAAATCTGTGCAAAAAGCCGCCTTCGACGGGCGACAAGCTGCCGCCGGCATCATCACCTCGTCCTGTGTCCCAGAGCTCTGAAGTTCCTTCGAGGGCGACACCAGTCAAGGAAGAGCAACCCGATCAGGATCATCTAACTCTGGAGGAGGGAGCATCATCGGCTGGCGAAGGTTCGACACCAGGTGGTGCTCCTAGTGGTGGTGCCTCTAGCTATCCCCAAGAAGCCGGCGATGCCGAGCAATCGCTGATGAAGATGCAGCTCCATGCCCATCGCTTCCCGGCCAGTCCACTTGATTTTCAACAGGCTCTGATGTCCGCCGGTCCTCCGAGCTCCAGTCTGGATCCGCCGGTGAATAATAAGCACTTTTGCCACGTCTGCCGGCGGAACTTTAGTTCCAGTTCTGCCCTCCAAATCCATATGCGAACCCACACGGGTGACAAGCCCTTCCAGTGCAATGTGTGCCAGAAGGCCTTCACCACCAAGGGGAATCTCAAGGTACACATGGGTACGCACATGTGGACGAATCCCACTTCGCGGCGAGGACGTCGTATGTCCTTGGAGCTCCCCATGCGTCCTGGTCCCAATCAGGGAACTGGACATCCAGGATCGAGTGCGGAGCAGGAGTTTATGCAGCGAAGACCGGAGCTTTTCTTTCCCTACCTGCCGCCTTTCTTTAATGGATTGCCACCAAAGccTGGTGAACTGAGTCCCGGCGCCTTTTCCAACATCCCTCCGCCGCCTTTTGCCAATGGAGGAAAGTATCCCTATCCACCAGGACTTCTTGGTTTCCCAGGCTTCCTGGGACAGCATCCATATGGCATGGAtcgcaggagcagcagcaagtcACCCACACCAGAGCCGGCCCAGAGTCCCTCCCTGAGGGAGGAGGAAATGGGAGCCGGCAGCATTTGGCATCCGCTGAGCAGGATCAAGGTGGAGGGCAACCAGGGCGAGGCTCTGCTCCACGAGCAGGATGACCAGGCGGAGGCTGAGACAGAGGCCACCGGTGGGGGAGACATGGAGGAGTCAGAGTCAAGAGATGCAGAGAAGTAA
Protein Sequence: MCSIFRNRINYRGTGGTRSGSGERDRDRERDRDRDRDRDRDRDRDTLLAKELDADSNNNGTEPQVEPEMEAAPDCSDTEREAEQEQEQELDNSNEALDLSVISASGRGSLPGSGHVSLEALQHTKVAVAQFAASALSGGGGGGVGGDHQSADLAMVQSTIFNVQRQHLMQLQLIQHLQSQLKRAEAVALGRQTQSDEEEDEAEPEPERELKQESANGLKEEIQEQEQEEEQEQELERERERERELEESSKTDKATTEERRVQAEIEGSDYQPLMCDISSSLASSIITNHDPPPAPNEPNCLEMLQRRTEEVLDSASQSLHAAQLQEEYSEYASKEAQSRGEIFKHRCKYCGKIFGSYSALQIHLRSHTGERPFHCNVCGSKFTTKGNLKVHYQRHTQIFPPMLLPPGVAPNVGHTSGQAQAPGQGQIPAEQFPMRLPFVPPAIPCSQEQVQHQAEEQEEIKTEIPTQQAEDLSKPAVKEKEKGQEKAHSPMESVKTPKAVSPEVKPRPPPIPAEPLPEKPEKETPPKPAMTPSRRNGSVRKRQTSSAGSPPQEDRERDLAEHLHIAKLVRRSSSSRESQQPAEYSLAQMERIIDKSWEDLIEIDKTSETSKLQQLVDNIENKLTDPNQCIFCQKVMSCRSSLQMHIRTHTGERPFRCKICGRAFATKGNLKAHMSIHKIKPPMRSQFKCPVCHQKFSNGIILQQHIRIHTMDDGSGGQGGAPPNPEVERLGIEDQNSNKSMGTSDTLDFSTTISDHSGQRSESSQGGDFDEFMTMDSTDDSRDNSSAATATPHPLERERDRERDRERERRPQNGFDERSHSNPDLAGGRSESGEMPAMDLSSPSSASGRIFGAGMVNGAAGGGGSGMPMLGMPMPPNLLLMAAAREEMHALGHAHEFPLLPFGPLGFMGLHPPPNVCNLCFKMLPSLAALESHLQSEHAKEPTAGHAHRTHCNDAGAPYGAKLTLNPNLCKKPPSTGDKLPPASSPRPVSQSSEVPSRATPVKEEQPDQDHLTLEEGASSAGEGSTPGGAPSGGASSYPQEAGDAEQSLMKMQLHAHRFPASPLDFQQALMSAGPPSSSLDPPVNNKHFCHVCRRNFSSSSALQIHMRTHTGDKPFQCNVCQKAFTTKGNLKVHMGTHMWTNPTSRRGRRMSLELPMRPGPNQGTGHPGSSAEQEFMQRRPELFFPYLPPFFNGLPPKPGELSPGAFSNIPPPPFANGGKYPYPPGLLGFPGFLGQHPYGMDRRSSSKSPTPEPAQSPSLREEEMGAGSIWHPLSRIKVEGNQGEALLHEQDDQAEAETEATGGGDMEESESRDAEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00527496;
90% Identity: iTF_00527496;
80% Identity: -