Basic Information

Insect: Drosophila seclusa
Gene Symbol: -
Assembly: GCA_035043575.1
Location: JAWNMX010000360.1:2179209-2182169[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.00093 0.059 13.8 1.2 3 23 152 172 150 172 0.96

2 7 0.005 0.32 11.5 0.9 1 21 178 198 178 199 0.94

3 7 0.019 1.2 9.7 2.4 2 23 536 558 535 558 0.94

4 7 4.8e-05 0.003 17.9 1.8 1 23 647 669 647 669 0.98

5 7 4.5e-05 0.0028 18.0 5.7 1 23 675 697 675 697 0.98

6 7 0.00039 0.025 15.0 2.9 1 23 703 725 703 725 0.98

7 7 0.00038 0.024 15.0 0.1 1 21 731 751 731 752 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.00093	0.059	13.8	1.2	3	23	152	172	150	172	0.96
2	7	0.005	0.32	11.5	0.9	1	21	178	198	178	199	0.94
3	7	0.019	1.2	9.7	2.4	2	23	536	558	535	558	0.94
4	7	4.8e-05	0.003	17.9	1.8	1	23	647	669	647	669	0.98
5	7	4.5e-05	0.0028	18.0	5.7	1	23	675	697	675	697	0.98
6	7	0.00039	0.025	15.0	2.9	1	23	703	725	703	725	0.98
7	7	0.00038	0.024	15.0	0.1	1	21	731	751	731	752	0.96

Sequence Information

Coding Sequence: ATGCACGAGGAAATTGTGATTAAAACTGAGGAAATTGATATTGATGATACAAAGATAAAGCTTGAGATCGATGAGGATGGGCCAACAATGGAATTGTCGTGcgCTGGCACCTTTATGAAAATAATCGAGGAGCGTCCGAATATGATAACGGTGCCGGTTCACGACTGCAAATCTGAGGACGAGCTCAAATTCATAGCGAGCCTTGGCACTTTCGACCACCAGCAAAAGTTATTTGTGACGTCATCGGTTGAGAGTGCTGCCTCTCTCGgcgcatttgcatgcaaagtATGCAGCTTTACGTGCGAAAATCACTTATCGCATGCTTCGCATCAGAACAACCATCAGCTAAATCGCCATTTCTGTTGCCATGGCTGTGGTGAGTGGTGTAACACGCTCGAAGAAATCCAGGAGCATGAATATCGAAAGCATGCGGATGGAGTTAACAACTCCAACTGCAGGATCTGTCAGTTGGAGTGTACCGATGCAGCCAATCTGTCGAGGCACATGAGCAGTCACTTCTATGTGCGTCGCTTTGTGTGCTCCATTTGTCGCCGGCATTTTGAGACACGCCTGGAATTGCAACTACATCGGCAGAACGGCAATAAGCTGTGCGGTCAGCTCGAATATGCGGATATGCATGGAAATATCGGTCAGCTGGTCGCGATCAGTAAATTGGATACGACATTGCCAGCTGAGCGGTTCTGTGACATAGAAATTAAATCTGAGCCGGTGGACGCAGAGGACCAGCTTCCAACTGGTATTATTATGAAAACGGAGCCACAGTCGGAAGCAGCTGAGTTAAATTCCACTGGCCACGATAACAGCCGGACCCGAAACAGCCTAGCTGGACAATTGCGCAGCAAATTGCGCTTGCCCATAATAAAGAAACCACCGAAAGAGGAATGTGTAGTGCAGGAGAAACCAAGACCGCCTGTGAATAAATCAAACTTTGTGCCCAATGGTAAACTGATACCTTTTGCAAACTCTACAGCATCACAGAATCACTCCAACATTTTACGGCCAAAGCAATCAGACAAGCAGACCTCAAGTATTTTGAAGATCATTTccaaacccaaaacaaatatttccaacAACGTCGTAAAGCTAATGCAAAGTAATTTCATGGTGATTAAAGTGCAGCCAAACATAAAGGTAATAAAGCTGGCACCAACCGCAACGGGTAACACTTCGAATAGCTTCAATATAGGAGGGAAAATAATCACATTGCCAAGCTCCATATCTATAAGTTCGGGACGTCAAAGCTCGACGGCTGGCCAAACGGACACAATTCCAACCCCATCTGCTCCTACTTCGCGACAAGCGGCCTCACTGACAATGCCCATTACCCGAAATTCTCATTTGAATGCTATTAGTTTGTTTGAGAGTTTGCCAGAGTCTCGCAAGATCATTACAGATATCCAGAATCAGATACGCAACATAGAGCAAACGTTGCCACTGCCCGGCAGTGTGCTGCACCCGAAAAACAGATGCACCAAAGTTGAGTTACCTGCGCAGCTTCAGATGCTTCGACTGCCGCTCACCAAGGAGAGTAATCTGAAGGTACGTCAATTGCGCAACGCATATCCTGATCATCGCTTTCACTGGGAATGTCCGACCTGTGCGCGCTGTTTCGAACAATTTGCGGCATTCTGCAAACATTTGACAGTCTCGCACGACATCGTAGAGGCGAAGTTTGAGCACATGTCAGTAGAGGTCAAGTCTTATAAGAAAGGCATTTCCACAACTGTAGGAGCGACTGTTCCTGTAGTGCCAGATATAACAAATACACCTCCATTAAATTCTTCTGCTGATCCAGATCCTATGCAGAATGCAGgggcagctgctccagcaacTGTGGCACCTGAAATTGCAGATCCTGAACCAATCTTACCGATCCCAGCGTCTACTAGTGTAATCCCCCAATCTTTGTATTCTCAATATAAATGCGTCGATTGCTCAAAGTGCTTTACCACTATGGGTGGGCTGCGCATCCACAAGATGATTCACACCGGCGAGTTGCCACATAAATGCAACTACTGTGAGAAGCGTTTCCGCACTCCTGGCCAGGTGCGTGTCCATCATCGCAGGCACACTGGCGAGAAACCATTCAAATGCAAGGTGTGCTCACTGGATTTCACACATCGCGAAACGCTCATTTCGCATCTCTCGCGTCACATTGGCATGAAGCGTTACAAGTGCTACGGCTGCGATAAGAACTTTATTGTTGTCAGTGGATTGCGTGCCCATCGCCGTTTACGTCCTGACACGTGCGGCAAGGTCAAGTTTACGGCTCGCGCACACGGTCCGCGAGTTCGCGTAATACGCGGCGAAGTCGTCTTCGAATCCCATCCTGAGCACAATGGCTACTTGCGCAGCGAGGACCCTTTAAACATAATGTCTGAGATGATTCATGCCAAAGAACCGTCTGTGGCCAATGAGTCCAGCTAA
Protein Sequence: MHEEIVIKTEEIDIDDTKIKLEIDEDGPTMELSCAGTFMKIIEERPNMITVPVHDCKSEDELKFIASLGTFDHQQKLFVTSSVESAASLGAFACKVCSFTCENHLSHASHQNNHQLNRHFCCHGCGEWCNTLEEIQEHEYRKHADGVNNSNCRICQLECTDAANLSRHMSSHFYVRRFVCSICRRHFETRLELQLHRQNGNKLCGQLEYADMHGNIGQLVAISKLDTTLPAERFCDIEIKSEPVDAEDQLPTGIIMKTEPQSEAAELNSTGHDNSRTRNSLAGQLRSKLRLPIIKKPPKEECVVQEKPRPPVNKSNFVPNGKLIPFANSTASQNHSNILRPKQSDKQTSSILKIISKPKTNISNNVVKLMQSNFMVIKVQPNIKVIKLAPTATGNTSNSFNIGGKIITLPSSISISSGRQSSTAGQTDTIPTPSAPTSRQAASLTMPITRNSHLNAISLFESLPESRKIITDIQNQIRNIEQTLPLPGSVLHPKNRCTKVELPAQLQMLRLPLTKESNLKVRQLRNAYPDHRFHWECPTCARCFEQFAAFCKHLTVSHDIVEAKFEHMSVEVKSYKKGISTTVGATVPVVPDITNTPPLNSSADPDPMQNAGAAAPATVAPEIADPEPILPIPASTSVIPQSLYSQYKCVDCSKCFTTMGGLRIHKMIHTGELPHKCNYCEKRFRTPGQVRVHHRRHTGEKPFKCKVCSLDFTHRETLISHLSRHIGMKRYKCYGCDKNFIVVSGLRAHRRLRPDTCGKVKFTARAHGPRVRVIRGEVVFESHPEHNGYLRSEDPLNIMSEMIHAKEPSVANESS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00620147;
90% Identity: iTF_00497693;
80% Identity: -