Dsan007110.1
Basic Information
- Insect
- Drosophila santomea
- Gene Symbol
- -
- Assembly
- GCA_016746245.1
- Location
- NC:8921462-8923537[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.7e-16 3.3e-13 48.7 0.0 2 45 349 392 348 392 0.95 2 3 0.03 59 3.1 0.0 28 37 422 431 417 436 0.89 3 3 2.8e-19 5.4e-16 57.7 0.0 2 44 458 500 457 501 0.93
Sequence Information
- Coding Sequence
- ATGAATCACCTAAAGTGGATGGGCCACTCGTCCACGATAATGGACATTCAACGCTCGCTGCGTAATGATAATCAGCACTGCGAGGTGGTTCTGGCCTCCAGGGACGGGGTTCGAGTGCGCGCCCATCTCTTCGTGCTTAGCACCTGCAGCGAACTGATGCGCAACCTCCTGGTCGACGTTCCGCGCGGCCAGGAGGCAACTATTATGTTGCCCGACATCCGCGGTGATTTGCTGGAGTGCATGCTGTCCTTCATCTACATGGGCGAGACGAGCCTGCCCTCCGCGTCGCTCTCCGAGTTCCTGGAGGCCATTAACCTGCTGGGCATCAAGTCTGCCATCAGTTTCGAGTGCAATCCATCGGCTAGTCCACCCAGCGTCGATTTAGATAACAATTCGTTAGCCGTTGAGTCGGCCAAGTCCATAACTGGCCTTCAGATCGCTGAGGCGGAGCTGTtggacgacgaggaggagccACAACCGACGGTGTCTGTGCCAGCCACTGTCCTCGCGGGGTCACAGCATCAGCCCGGCCACTCCAGCCGATCCTTGGAGTACCTGGATGTCTACGAGCCGCCGAAGATCACCTACTCCATAGAGCACATGGACGGAAATTCCAGCGGCAATCAGTTTATACTCACCGAGAACACGGGCACTTTTACTATAACACAGTCAGCTTCGAGTTTATCAAAAATTGAAGCTGATGAAACGGCAACCAGTGGCGCTGAAGTGGACCTCGGAGACGATGACGTGGATGCGGACATTGCTGAGGATTCTGAGGAGCACGAGTCACAAATGATCGAGGAAGAGTTCGTACCAACCGATCCTCTTATGGAACTTGAAGCGGGTACTGAAAtggacgacgatgacgatgtgCACGACCATCTTGTGGACGATGAAATAGACGAAAAGCCTCGAAAGTTGGGCGGGGGAAAGTCTCGAATCCGCCGCTCCATAAGTGCGAAGCCTGTCAAACGATTGCCCGATTGTAAGCCAACGCGACTCCAACAGTTTGTGGCGCTCAAACGGGAGGTAAAAGACGATATCAACGACGCTTTGGATCTGGCGGCTGACGCGGTTATTATCGAGGGCTTAAGCTTACAAAAGGCCGCAGACCGATTTGACATCTCCAAGACAGTCCTGTGGCGCCGCGTCCGCACTAATCCCGCCTACATGCGAAATAACCGGGAACGACCATCGCTGCTAGAGGCCTACGAACGCCTGAAGAATGGAGACTCTTTGAAGAGTATCAGCACGGAGTTGCAAATCCCCATGTCTACATTGCACCGGCACAAGGTTCGTCTGTCCGCCCAGGGACGCTTGCCCAACTTCGTGTCCTGTCGAAAGCGAGACACCACGCCCAAGGATGAGCTGCGCGACAAATTGGCCAAGGCGGTGCATGCGTGCCTACATGAGGGAATGTCGCAAAACCACGCGGCCAATCTGTTCGAGATCCCTAAGAGCACACTATGGAGACACCTGCAGCGACGCTCGACGAGCCAGAACAGAAAGGTTAAGAAGGAATTGAAGGTCGAGTACGGAGAAGATATGCTAAACTAG
- Protein Sequence
- MNHLKWMGHSSTIMDIQRSLRNDNQHCEVVLASRDGVRVRAHLFVLSTCSELMRNLLVDVPRGQEATIMLPDIRGDLLECMLSFIYMGETSLPSASLSEFLEAINLLGIKSAISFECNPSASPPSVDLDNNSLAVESAKSITGLQIAEAELLDDEEEPQPTVSVPATVLAGSQHQPGHSSRSLEYLDVYEPPKITYSIEHMDGNSSGNQFILTENTGTFTITQSASSLSKIEADETATSGAEVDLGDDDVDADIAEDSEEHESQMIEEEFVPTDPLMELEAGTEMDDDDDVHDHLVDDEIDEKPRKLGGGKSRIRRSISAKPVKRLPDCKPTRLQQFVALKREVKDDINDALDLAADAVIIEGLSLQKAADRFDISKTVLWRRVRTNPAYMRNNRERPSLLEAYERLKNGDSLKSISTELQIPMSTLHRHKVRLSAQGRLPNFVSCRKRDTTPKDELRDKLAKAVHACLHEGMSQNHAANLFEIPKSTLWRHLQRRSTSQNRKVKKELKVEYGEDMLN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00605685;
- 90% Identity
- iTF_00504790;
- 80% Identity
- iTF_00591795;