Basic Information

Insect: Drosophila rufa
Gene Symbol: -
Assembly: GCA_018153105.1
Location: JAECXS010000085.1:4220046-4221557[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 6.2e-06 0.0004 20.5 6.1 1 23 187 209 187 209 0.98

2 11 1.3e-07 8.4e-06 25.7 2.2 2 23 213 234 212 234 0.97

3 11 0.00056 0.036 14.3 0.6 1 19 240 258 240 259 0.97

4 11 3.1e-06 0.0002 21.4 0.8 1 23 280 302 280 302 0.98

5 11 1.2e-07 7.6e-06 25.9 2.6 1 23 308 330 308 330 0.98

6 11 0.002 0.13 12.6 0.5 1 23 336 358 336 358 0.97

7 11 9.2e-05 0.0059 16.8 2.9 1 23 364 386 364 386 0.99

8 11 2.3e-05 0.0015 18.7 3.8 1 23 392 414 392 414 0.98

9 11 2.2e-05 0.0014 18.8 0.2 1 23 420 442 420 442 0.99

10 11 2.5e-07 1.6e-05 24.9 1.8 1 23 448 470 448 470 0.98

11 11 3.8e-06 0.00024 21.2 7.3 1 23 476 498 476 498 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	6.2e-06	0.0004	20.5	6.1	1	23	187	209	187	209	0.98
2	11	1.3e-07	8.4e-06	25.7	2.2	2	23	213	234	212	234	0.97
3	11	0.00056	0.036	14.3	0.6	1	19	240	258	240	259	0.97
4	11	3.1e-06	0.0002	21.4	0.8	1	23	280	302	280	302	0.98
5	11	1.2e-07	7.6e-06	25.9	2.6	1	23	308	330	308	330	0.98
6	11	0.002	0.13	12.6	0.5	1	23	336	358	336	358	0.97
7	11	9.2e-05	0.0059	16.8	2.9	1	23	364	386	364	386	0.99
8	11	2.3e-05	0.0015	18.7	3.8	1	23	392	414	392	414	0.98
9	11	2.2e-05	0.0014	18.8	0.2	1	23	420	442	420	442	0.99
10	11	2.5e-07	1.6e-05	24.9	1.8	1	23	448	470	448	470	0.98
11	11	3.8e-06	0.00024	21.2	7.3	1	23	476	498	476	498	0.99

Sequence Information

Coding Sequence: ATGATCAACATATTTGATGGCGCTCCCATTGCCGATTTGATTTCCCGGGTTACAGGTCATCAGGTTTCCAAAGGAGACTCCTTTCCCGAGAACATATGCCGGCCTTGCCTGCAGGATGCGACAAAAGCCTTTAAGGTAAAGCAAACCTACGAGCGGAGCCGCCAATTATTCGGCAGGCTTAACGAGGATTCACAGGAGGAGGAGGACTGCAAGGCTGAATTCTCGAATTGTGATGTCAAGAGGCATCTAAAGAAAGAGCCTTTGGATGATCTAGTAGAGATAAAAGTCGAAGAAGGGGAACCGAACATAGGCCAATGTGACTACCAGGATAAGACTGAGACGTTAGACTTCCTGGTGAAGCAAGAAACGACCGAAGAAGATATAGAAGAGCATGAGGAACCAGACCAGGACCAGTGCCAGGTTAAGAACGAACCCCTCGAAGATGGCTCAAGTGACGAAGAGGACTGCCAGACTTCAGACGGCGAACTTGATCAGTCCGATGACCAAATGCATAGCGAAGGAATCGAGCTGCCACATTTGGGAAATCATGCTGGGAACCACCAGTGCAGCCATTGCTCGCGATCCTTCACCAAGCAGTGGTCCCTTCGCATACACCTCCGCACGCATGAACCCCTGCAGTGTCCACACTGTCCCAAGACTTTCACCAAGCCCTTTACCCTCAAGGTCCACCTGCGAACGCACACGGGCGAACGACCCTTCAAGTGTGACCTCTGCCAGAAGAGCTTTGCGGAGAAGCGGACTCTCAACATTCACAGTGTTCAATGCGCCAAGTTCTCGGAGAAGCTATCTCTTTTGGAGAAGGTACGTTCCCGACCCTTTACGTGCTCGCATTGCCCCAAGTCCTTTTCGGAGGAACCCGATCTTAACGAGCACCTGCTCACGCACTCGGGCGAGAGGTCGCACAAGTGCTCCATTTGTGAGAAGACCTTCATACAGAACTCAAGTCTTCAGCGACATCTGCGATGGCACAAGGACGAGCGCACGTTCAAGTGCTCCCAGTGCCCCAAGTCCTTTCTGGAGGAACAGCAGCTCACAGAGCACACTCTCATTCACTCGGGGGTCAATCCGTTCAAGTGCTCGCAGTGCCCGAAGACTTTCCTGCTAAAATCCACCCTTGAGCGCCACTTTCGGACGCACACGGGCGAGCGACCCTATAAATGTACCCAGTGTGAAAAGTCGTTTTCTTTAAGTAATCATCTTAAGATTCACACCCTCTCGCACACGGGAGAAAGTCCCTACCAGTGTCCCCAATGCCCCAGATCGTTCTTGGGCAAGCAGGGGTTGGAAAACCACATCCGAACGCATACTGGGGAACGGCCCTTCAAGTGTCCTCACTGTCCCAAGGATTTCACGCAAAAGTCAGGCCTCCAGGGACACCTGCGAAACCACACGGGAGAACGACCTTATAAATGTGACATCTGCCAGAAGTCTTTCACGCATAAGCACTATCTTACAAGCCACATCTTCACCCACAGCGCCGAGAAGTCGTAG
Protein Sequence: MINIFDGAPIADLISRVTGHQVSKGDSFPENICRPCLQDATKAFKVKQTYERSRQLFGRLNEDSQEEEDCKAEFSNCDVKRHLKKEPLDDLVEIKVEEGEPNIGQCDYQDKTETLDFLVKQETTEEDIEEHEEPDQDQCQVKNEPLEDGSSDEEDCQTSDGELDQSDDQMHSEGIELPHLGNHAGNHQCSHCSRSFTKQWSLRIHLRTHEPLQCPHCPKTFTKPFTLKVHLRTHTGERPFKCDLCQKSFAEKRTLNIHSVQCAKFSEKLSLLEKVRSRPFTCSHCPKSFSEEPDLNEHLLTHSGERSHKCSICEKTFIQNSSLQRHLRWHKDERTFKCSQCPKSFLEEQQLTEHTLIHSGVNPFKCSQCPKTFLLKSTLERHFRTHTGERPYKCTQCEKSFSLSNHLKIHTLSHTGESPYQCPQCPRSFLGKQGLENHIRTHTGERPFKCPHCPKDFTQKSGLQGHLRNHTGERPYKCDICQKSFTHKHYLTSHIFTHSAEKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -