Basic Information

Insect: Drosophila rubida
Gene Symbol: -
Assembly: GCA_035046165.1
Location: JAWNOF010000002.1:393114-396452[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.81 48 4.5 2.1 1 22 344 365 344 367 0.74

2 8 0.00058 0.034 14.4 0.8 1 23 375 397 375 397 0.97

3 8 0.0001 0.0061 16.8 1.2 2 23 405 427 405 427 0.96

4 8 0.00036 0.021 15.0 0.1 3 23 436 457 434 457 0.93

5 8 0.43 25 5.4 1.6 2 23 466 487 465 487 0.96

6 8 0.3 18 5.8 1.0 1 23 496 518 496 519 0.94

7 8 1.5e-05 0.00085 19.4 0.6 1 23 524 546 524 546 0.97

8 8 0.02 1.2 9.6 8.2 1 23 552 575 552 575 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.81	48	4.5	2.1	1	22	344	365	344	367	0.74
2	8	0.00058	0.034	14.4	0.8	1	23	375	397	375	397	0.97
3	8	0.0001	0.0061	16.8	1.2	2	23	405	427	405	427	0.96
4	8	0.00036	0.021	15.0	0.1	3	23	436	457	434	457	0.93
5	8	0.43	25	5.4	1.6	2	23	466	487	465	487	0.96
6	8	0.3	18	5.8	1.0	1	23	496	518	496	519	0.94
7	8	1.5e-05	0.00085	19.4	0.6	1	23	524	546	524	546	0.97
8	8	0.02	1.2	9.6	8.2	1	23	552	575	552	575	0.97

Sequence Information

Coding Sequence: ATGATTTGCCGCTTGTGCCTCTGCGATTTGGAGAACTCGGTTTCCATTTTCATATACAACGACGCCGAGCACGGTCTGCCCAAGTtgattgccaaatatttgaagcTCGAGCTGAGTGTCAATGACAACATATCCAGCCGACTGTGCACACCATGCTGGCGCTATCTCACCGAATTCGAGCAGTTCTGCATTATGGTggcgaagcagcaacagatgCTGCTGTTAAAAACCGAACCTGAGCCGCCGCCCGAACCCGCCGTTGTTGTCTGGAACACTGAATCGTCTGGTGTGGACTCAAAGTTGACACTAAGCTTTGACAACGATGTCAAGGATCACATTCTCTGCGAACCCGAGATCGATGTACACGACGCTGATGCCAATCAAACTTCTAATCATCTGCACAGTCGCAATGACGATCATGAGCATAGCGAGGATTGTCCTGATGATTATGCGCAGGAAGGCGATGCCTTCGCTTACGAATTTGAGCCAGTGACCTTAACGGCTACCACGGCCAAGCAGACCAAGGGTAAGACGCGTCAGGCAGCGGCCAAGGCTCACAAGGAAGTACCGactgcagccgccgcctccacGTTGCGTGAATCTCGTGCACGTTCCCGTGAGCTGCGACGCAATGCAGTCGTCGCCGTCAGTCAAACTGTAGCCTCACTTGAACCCGATTCTGTGCCTGTAGTGAAGCCAGCTGCGCAGCTAGCATCACAGCCAGTCTCCAAACGCGGACGTCCTAAGGGCGCTGTGAAAGGCTCCCCGCCCAAAGTCAAACGCCCCAAGATAGACGGCGCCAAGTTAAACGCGaagcgcagcagcatcaaagAGATGGACGACTATATTGCGGCCAATGTGAAGCTCGATTGTTGCCTCTGTGCGGCACCGTTGCAAAACTTTATCGAATTGAAGCGACACTTTCGCCTCGCACACAAATGCACCGGCTACATGGAATGCTGCAATAATCGTTACAAGAAGCGCACGCTATACGTGGATCATTTGCACTATCACAAGGATCCACAGTATTTTAGCTGTGAGGAGTGTCGCAAGAGTTTTCTTAATCGCAACAGCCACGACATGCATATGTTGCGCTTCCATTCcgatcagcagcagttggTGCACCAGTGCGGCATCTGTGAGGCGCGATTTGCCAAAAAGTTTCTGCTAACGATGCACATCAAAGGACACAAGGGCACTGAGCGCACCGAAGTCTGCGAGACCTGCAGCAAAAAGTTTCGCACCAAACTGGAGCTGACTGCGCACGTTAAACGCATGCATACTACGGACTTCACGCTCATCATCTGTGACATTTGCGGCGTCAATTTTCGCTCGAAAGCCAACTTTCTGATCCATAAAAAGGCACTGCATCCCGATGGTCCCGTTGCTGAGGTGCAGTGCCATTTGTGCAGCCGCTGGCTGCGAGATGATCGCAGTTTGCGCAAGCATCTGGCGCGGCACGATGATCGCGAGGGCAACAACATGTATCGCTGTCTGCTCTGCAACGCAGAGAAGGCATCTCGTGTGGCGCTGAGCAGCCACATGCGTTACCATCATTCGACCAAGCGACACAGCTGCACACTGTGCGGCAAGGAGTTCAAATTAccacgctcgctcgctGAACACATGGCGACGCATACGGGCATAGATCTGTATTCGTGCCAATTCTGCACGCGCACCTTCAAGTCGCATGCCAACATGCACAACCACAAGAAGAAAATGCATCCCAATGAATGGGTGCGCAAGTATTCACAACCCAGTGGCCAGGCGACGACTGCAGCAAtgactacaacaacgacgacgtcgctggATGTCACATTGGATTCGCCAATTCCAAAagaggcggaggaggaggtgaCACAGCAAACAGCATCCGATGCGTCTGGCAGTTATCATCAATTCATCACGAATGGCGCCGTCTGTCCACTGTGA
Protein Sequence: MICRLCLCDLENSVSIFIYNDAEHGLPKLIAKYLKLELSVNDNISSRLCTPCWRYLTEFEQFCIMVAKQQQMLLLKTEPEPPPEPAVVVWNTESSGVDSKLTLSFDNDVKDHILCEPEIDVHDADANQTSNHLHSRNDDHEHSEDCPDDYAQEGDAFAYEFEPVTLTATTAKQTKGKTRQAAAKAHKEVPTAAAASTLRESRARSRELRRNAVVAVSQTVASLEPDSVPVVKPAAQLASQPVSKRGRPKGAVKGSPPKVKRPKIDGAKLNAKRSSIKEMDDYIAANVKLDCCLCAAPLQNFIELKRHFRLAHKCTGYMECCNNRYKKRTLYVDHLHYHKDPQYFSCEECRKSFLNRNSHDMHMLRFHSDQQQLVHQCGICEARFAKKFLLTMHIKGHKGTERTEVCETCSKKFRTKLELTAHVKRMHTTDFTLIICDICGVNFRSKANFLIHKKALHPDGPVAEVQCHLCSRWLRDDRSLRKHLARHDDREGNNMYRCLLCNAEKASRVALSSHMRYHHSTKRHSCTLCGKEFKLPRSLAEHMATHTGIDLYSCQFCTRTFKSHANMHNHKKKMHPNEWVRKYSQPSGQATTAAMTTTTTTSLDVTLDSPIPKEAEEEVTQQTASDASGSYHQFITNGAVCPL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00595555;
90% Identity: -
80% Identity: -