Basic Information

Gene Symbol
PRDM1
Assembly
GCA_035046165.1
Location
JAWNOF010000021.1:1213784-1218439[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 3.1e-05 0.0018 18.4 2.5 1 23 930 952 930 952 0.99
2 5 9.4e-06 0.00055 20.0 5.1 1 23 958 980 958 980 0.98
3 5 2e-06 0.00012 22.2 4.3 1 23 986 1008 986 1008 0.98
4 5 0.00066 0.039 14.2 2.4 1 23 1014 1036 1014 1036 0.97
5 5 0.00011 0.0065 16.7 0.1 1 22 1042 1063 1042 1063 0.96

Sequence Information

Coding Sequence
atgcatggACTTCATCAGCatccacagcagccgcagtcggcgtcgcagcCGGCGCCAGCGCAGCAAACGCCAGTGACCATGAAGACGACGTCGTCAGTCGGCAgtgcccaacaacagcagcagcagcagcaacagctgcagcaacaacagcaacacataGCCATACAGCATCCACATGCGCACCAcccgcatcagcatcagcatcagcatcagcatccacatgcacacgcacatcTGAATCCACAAcagcatccacatccacaccACCCACAGCACGCGCACCCGCACGCCAAGCTGCTGCGTCGCtcgcgcagtcgcagccgcagccgcagtcgcagccggtCGCGCAGTCGCAGCCCGACGCCCGACGGCAGCCGCGACTACGACGTGACGCGCATGCGTGAGGAGGACTTTGAGCGGCTGGCCGTCTACTTGGTGCCCGACGTGCAGGCTGAGCGCGGTCTGCCCAATCGGGCGGACAAGACGCTGCCGCGCAGCCTGACGCTCAAGTCATCGATGGTCTACTCAACGCCAAATGTTAAGACTGAAGGAGTTTGGAGCAGCGGCGTGATTCCGCGTGGCACGCGCTTTGGCCCTTTCGAAGGCATTCCAACCTCAAACTATCCAAATGATAAGAATAAGGCGCGCTATTTCTGGCGGGTGCAGGGAACACGCCACATAACCTACGGGAATATTAAGATCTTCAAGGACgacgactactactacttgGATGGCTCGGACCGCTCGCAGTCGAACTGGATGCGCTACGTGGCCTCCGCGTACAGTCTGCAGGTGATGAACCTGGTCGCCTGCCAGCACCAGGAGAACATCTACTTCTACACCACCCGCGACATACTGCCCAACGAGGAGCTGATGGTGTGGTACTGCAAGGACTTCGCCAGCCGCCTCGGCTACGACGTCGATCCCGAGCGCACCATCTTCGGGGCCTGCAAGCAggacgtcgacgtcgaggacgacgacgaggacgagctgCCGCCGCACAAGAAGCCGCACTACGCCATGCCCGCCGCGCCCGAAATTcccgccgacgtcgccgtcaGTCACATCACCTACGTGATGGGCCTCCATCTGCCTGGCGCGGCACCAGCTGCAGGTTCGACCGCCGCTGCTCCCGTCTCCGCATCCGCCCCGTCGCAGTGCTGTCGTCGCGCCAGTCCGCCGGCGCACGTCAGCAccacgacgacggcagcgccggcaacggcggcggcgacgacgaacGCGCTGCACCCGCACATTCAGCACAGTCGGCACGCTTCCGTCATCATCGGGCAGGATCGCTCGCCGCTGAACAGCGGCTGCGACAAGGAGGCGGCCACGTCCTCCTCGTCGGGTGTCTCCGAGCACCACTACGAGCACCAGCTGACGCCGCAGGACGGCAGCGTGCGCTCGGTGCGCTCCGACGAGGGCTACCACAGCAACGAGTGCCACGAGGACGGTCTGACGCCGCCCGAGGActccagcgacagcgagagcgagcacaaCTACGTGCTGGACTGCTCCAAGAAGGCCATCGCGCCCAAGGAGACGGTCATCGCGCAGGCGCAGAAGCCCAGCAGCGTCACGCCGCCCGCGCCCAGCACGCCGCCCCAACAGccccagcagccgcagcagcagctgcagcaactgcagcagctgcaggaggcgGACAAGAACGAGTACCGCAAGTTCAAGGTGAAGATGCCGCTGAAGTACGAGTTCAAGAACAAGAGCTGCGTCAAGCAGGAGCCGCTCAAGGACGCCGACGAGCACCTGGCGCCCAACGGCAGCCTGGAGGACGAGGAGCTGCACGAACtgcacgccgccgccgccgccgtcgccgtcgaggACGCACTCTGCCCGCCCAGCACGACGACCACGCTGGGCGAGGAGTCCGCGCAGCTGGAGGCGACCAACCCGCAGCCCGCCTCCTCCACGGTGATCGTGCTCGAGCACAACCGCACCATAGTGCCGCTGAGCAAGCCCTACTACGAGAGCGACCCGCCCGCGCTGCCCGGCGAGCGCTACGTGCGCTTCACGCAGCCCAGCTCCAGCATCCTCGAGACCATACTGACCAGCCAGCACCGCCTGgaggccgccgccgccgcggccgccgcgGCGAACGCGTGCCGACAGGCGAACGCcgccacgccgccgccgacgtcgcccACCGAGATGGCGTACAGCTACAAGAAGTCGCAGCGCTATGGGAACGCCGTCAGCCCCGACTCCAGCTCGAACCTGGGGCAGCCGCAggagctgctggcggcgccgcTGGCCGAGCAGGGCGCGCTGATCAAGGGCGAGTGCGCGGCGCTGATCAAGGGCGAGTgctcgccgccgccggcgtcgtcgtcgtcgcaccaccaccatcaccaccaccaccaccagaaCGTGATCTACTCGCCGGGCAGTCACTCGCCCGGCTACGCGGGCTATGCGGGCTACACGGGCGCGCAGTCGCTGCACGCGGCCACCTCGACGTTCCACTCGCCGCCGCACAGCTCGCACTCGCCGTTCGACCGGCAGTCGAATGCGTCGAGCGGCGGCGGGTCGGCGTCCAACCTGCACCTGCTGCAGAGCAGCACGCAGATGCTGAGCCACCCGCTGATGCAGCCGCTGACGCCGCTGCAGCGACTGTCGCCGCTGCGCATCTCGCCGCCGAGCAGCCTGAGTCCCGACGGCAACTCGTGCCCGCGCAGCGGCAGCCCGCTGAGCCCCAACTCGCTGGCGTCGCGCGGCTACCGCTCGCTGCCGTATCCGCTGAAGAAGAAGGACGGCAAGATGCACTACGAGTGCAACGTGTGCTGCAAGACCTTCGGGCAGCTGAGCAACCTGAAGGTGCACCTGCGCACGCACTCCGGCGAGCGGCCGTTCAAGTGCAACGTCTGCACGAAGAGCTTCACGCAGCTGGCGCACCTGCAGAAGCACCACCTGGTGCACACGGGCGAGAAGCCGCACCAGTGCGACATCTGCAAGAAGCGCTTCTCGAGCACCTCCAACCTGAAGACGCACCTGCGGCTGCACAGCGGCCAGAAGCCCTACGCCTGCGACCTCTGTCCGCAGAAGTTCACCCAGTTCGTGCACCTCAAGCTGCACAAGCGGCTGCACACGAACGACCGGCCGTACGTGTGCCAGGGCTGCGACAAGAAGTACATCAGTGCGTCGGGGCTGCGCACGCACTGGAAGACCACCAGCTGCAAGCCCAACAACCTCGAGGAGGAGCTGGCCATGGCCGCGGCCGCCACCTCGGAGTGTCTCGACAAGGACTTGCCGGAGCCGGACTCGCGCGAGGCgtacgagcagctgcagcagcacatgcATCCCGTGCACCCGAGTCTGCGGCACTTGGCCGGCGGCCAGTCGCCGCCGCGCCTCATTCCGCTCGCCAGCAACGGCCCGCCGCCGCACCTGCACCTGCCCCAGCACCCGCatccccagcagcagcagcagcagcaatcacagcagcagcagcagcaacagcagcagccgccagccGGGCacctgctgcagtcgccgcacGGCGGTCCGCCCATGCTGCTGACCACTGCCAACCAGCTGGCGCCGCCCAGCGTgccgcaccaccagcagcctgctgagcagctgcagcacttggGGCCCGCCGCCCATCATCTGTCGCCCAAGTCGCTGAAGCAGGAGGCGGCTGGCTATCTGGGTCACGGTCACGGCCACGTGCATCCACATGGCCATGGTCATGGACACGGCcatggacacggacacggacatgGGCATGTGCAGGCGCAGGAGAATCGGCCGTCGGTCATTGAGTCCTCCAACCAGCCCATGATCATTGAGTGCACGTAG
Protein Sequence
MHGLHQHPQQPQSASQPAPAQQTPVTMKTTSSVGSAQQQQQQQQQLQQQQQHIAIQHPHAHHPHQHQHQHQHPHAHAHLNPQQHPHPHHPQHAHPHAKLLRRSRSRSRSRSRSRSRSRSPTPDGSRDYDVTRMREEDFERLAVYLVPDVQAERGLPNRADKTLPRSLTLKSSMVYSTPNVKTEGVWSSGVIPRGTRFGPFEGIPTSNYPNDKNKARYFWRVQGTRHITYGNIKIFKDDDYYYLDGSDRSQSNWMRYVASAYSLQVMNLVACQHQENIYFYTTRDILPNEELMVWYCKDFASRLGYDVDPERTIFGACKQDVDVEDDDEDELPPHKKPHYAMPAAPEIPADVAVSHITYVMGLHLPGAAPAAGSTAAAPVSASAPSQCCRRASPPAHVSTTTTAAPATAAATTNALHPHIQHSRHASVIIGQDRSPLNSGCDKEAATSSSSGVSEHHYEHQLTPQDGSVRSVRSDEGYHSNECHEDGLTPPEDSSDSESEHNYVLDCSKKAIAPKETVIAQAQKPSSVTPPAPSTPPQQPQQPQQQLQQLQQLQEADKNEYRKFKVKMPLKYEFKNKSCVKQEPLKDADEHLAPNGSLEDEELHELHAAAAAVAVEDALCPPSTTTTLGEESAQLEATNPQPASSTVIVLEHNRTIVPLSKPYYESDPPALPGERYVRFTQPSSSILETILTSQHRLEAAAAAAAAANACRQANAATPPPTSPTEMAYSYKKSQRYGNAVSPDSSSNLGQPQELLAAPLAEQGALIKGECAALIKGECSPPPASSSSHHHHHHHHHQNVIYSPGSHSPGYAGYAGYTGAQSLHAATSTFHSPPHSSHSPFDRQSNASSGGGSASNLHLLQSSTQMLSHPLMQPLTPLQRLSPLRISPPSSLSPDGNSCPRSGSPLSPNSLASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNLEEELAMAAAATSECLDKDLPEPDSREAYEQLQQHMHPVHPSLRHLAGGQSPPRLIPLASNGPPPHLHLPQHPHPQQQQQQQSQQQQQQQQQPPAGHLLQSPHGGPPMLLTTANQLAPPSVPHHQQPAEQLQHLGPAAHHLSPKSLKQEAAGYLGHGHGHVHPHGHGHGHGHGHGHGHGHVQAQENRPSVIESSNQPMIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00553931;
90% Identity
-
80% Identity
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