Basic Information

Insect: Drosophila rubida
Gene Symbol: salm
Assembly: GCA_035046165.1
Location: JAWNOF010000014.1:23152579-23161309[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 4.8e-06 0.00028 20.9 0.9 1 23 478 500 478 500 0.98

2 7 9.5e-06 0.00056 20.0 2.1 1 23 506 528 506 528 0.98

3 7 0.016 0.95 9.9 1.5 2 23 899 920 898 920 0.98

4 7 6.8e-08 4e-06 26.8 0.5 1 23 926 948 926 948 0.98

5 7 0.00021 0.012 15.8 2.3 1 23 958 980 958 980 0.98

6 7 0.028 1.6 9.1 2.9 2 23 1398 1419 1397 1419 0.97

7 7 2.7e-08 1.6e-06 28.0 1.3 1 23 1425 1447 1425 1447 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	4.8e-06	0.00028	20.9	0.9	1	23	478	500	478	500	0.98
2	7	9.5e-06	0.00056	20.0	2.1	1	23	506	528	506	528	0.98
3	7	0.016	0.95	9.9	1.5	2	23	899	920	898	920	0.98
4	7	6.8e-08	4e-06	26.8	0.5	1	23	926	948	926	948	0.98
5	7	0.00021	0.012	15.8	2.3	1	23	958	980	958	980	0.98
6	7	0.028	1.6	9.1	2.9	2	23	1398	1419	1397	1419	0.97
7	7	2.7e-08	1.6e-06	28.0	1.3	1	23	1425	1447	1425	1447	0.99

Sequence Information

Coding Sequence: ATGAAAAATCAGCCGAGTAACGTTCTGTGTGCGATGCGTAGTGACTTTAAGGATAATCACCAGGAGACCATCAATAAAATGATACAATTTGGTACCGTCAAATATGGCATTGTCAAACAGCTGAAGGATCGCGCCCGCAGCGCCGACAAAGAGATCGCCAGCGATCAGGAGGACAATGGCGCCTGCTCGCCGCTGACAGCCGCCACGGCGAGCGCCAGCGCCGACaacagtcccagtcccagccGCAGTCCGGCACGCCACAGCGAGGacgagctcgagctggagaGTGCTGCCGAGGCGGCCCTCGAGGaccacaatcacaatcacaaccacaaccacaacaaactgcaaatgaCAAAGCacgagctgctcgagcagccCACGCCCCGCTCGCCCGCCGCGGCCACAGCCCTCAGCGAGCAGGCGGCCGCACAGCCGGCGAACACGGAGCAGGACAAGGAGCAGGAGGACATCGACGTCGAGatgcaggaggagcaggagcaagaggaggaggaggaggagaagcccctgtcgacaacgacgacaacggcgacaacgactgcgactgccacgacgacgagcagcgcagcgggagcgggagtgacagcgggagcgggagcgggagctgCTCCCGTCACGCTCGAGGCGATACAGAACATGCAGATGGCGATTGCACAGTTCGCGGCAAAGACGATTGCGAACGGCGCCTCGGGCGCCGACAACGAGGCGGCCATGAAGCAGCTGGCCTTCCTGCAGCAGACGCTCTTcaacctgcagcagcagcagctcttcCAGATCCAGCTcatccagcagctgcagtcccAGCTGGCCCTCAACCAGGTCAAGCCCAGCGAGGAGGAAGTCGATCCCGAACCCGAAGTAGACGCCGAGGAGGAGCTCGAGCCCGAGGAGCGCGAGGACGGCGAGACCGACACgtacgaggaggaggagcgcaTCGCGGACATGGAGCTGCGCCAGAAGGCCGAGGCGCGCATGGCCGAGTCCAAGGCGCGCCAGCACCTCATCAATGCGGGCGTGCCGCTGCGCGAGCACTCCgtctccgcctcctcctcctcctcctcggtcCCGACAGCCGATGCAGACTCGCTGAAGCGcaagcgggagcgggagcgcgaCGAGGACGCCGCAGGACGCGCGAGCGGAAAGCCCAGGGAGCTGGCCAGGGACGCGCTGTCGCAACTGAAGGACATGGAGAACATGCCGCTGCCGTTCGGCTCGGACCTGGCCTCCAGCATCATCACGCACCACGACGACGCGCCCGAACCGAACTCGCTGGACCTGCTGCAGAAGCGCGCCCAGGAGGTGCTCGACTCCGCCTCGCAGGGCATACTGGCCAACAACATGGCCGACGACTTCGCGTTCGGCGACAAGACCGGCGACGGGAAGGGCCGCAACGAGCCGTTCTTTAAGCACCGCTGCCGCTACTGCGGCAAGGTCTTCGGCTCGGACTCGGCGCTGCAGATCCACATACGCTCGCACACCGGCGAGCGGCCCTTCAAGTGCAACGTCTGCGGCAGCCGCTTCACCACCAAGGGCAACCTCAAGGTGCACTTCCAGCGGCACGCCCAGAAGTTCCCGCACGTGCCTATGAACGCCACGCCCATTCCCGAGCACATGGACAAGTTCCATCCGCCGCTGCTCGACCAGATGTCGCCCGACAGCTCGCCCACGCACTCGCCCGCGCCCGTCCCTGCCCCCGCCCCGTCGACGCCCAGCCAGCCCAGCTCCTCGCAGGTCCCACCCGCCTTCCCCGGCCTGCAGGGTCTCTACCGACCGCCCATGGAGCTGCTCAAGTCACTgggcgccgccgctgcgggCGGATCTGCCGGCCTGCCCTTCTTCCCCCAGATGCCTGGCCTGGGCGCGGCGCTCCACCAGGAGCTGCCCACGGACCTGCGCAAGTCGTCGGCCCCGAGCTCGCCGCACGAGACCGCAGCGGGTCTCGGTCCGGTCAAGACCGAGCTGCTCGAGGACGAGAAGCACGAGTCGGCCCTGGCGGCGGACAACGCTGAGCTGGAGGTGGACGGCGAGCCGGAACTCGAGCCcgagccgctgccgctggaaGTGCGCATCAAGGAGGAGCGCCTCGACGAGGACCCGGAGCAGGACCACCCCGTACATCTGCACGCAGCTCAGTCGGAGGGCAGTGGCCGACGCTCGCCTTCACctgcagcgtcgtcgtcgccgccgctgctggcgcgaCAGCAGCACGCGTCCGCCATGCTGGGCTACCCGCCGGTGGTGCAGCCGATGCAGCCGGCGGCCAGCATGCACGCGCAGTGCTCGCCCGGCTCGCAGGCGCACCTGGAGCAGCTGCCGACGCCCGGCCAGCTGCCGCCGACAATGCCGCACCATCGGGACGACTTCTTCGCCGAGCGCTTCCCGCTTAACTTCACCACCAAGACGCTCTCGCCCGAGCACCACTCTCCCATTCGCTCGCCGGCCAGCCACGGCCATCAGCATGGCCATCCGcatggccacgcccactcgcaTGCCCACGCCCACATTCCGCGGTCGCCGTTCTTCAATCCGATCAAGCACGAGatggcggcgctgctgccgcgaccgcacagcaacgacaactcGTGGGAGAACTTCATCGAGGTGTCGAACACCTCGGAGACGATGAAGCTCAAGGAGCTGATGAAGAACAAGAAGATCAGCGACCCCAACCAGTGCGTCGTCTGCGACCGCGTGCTCTCCTGCAAGAGCGCCCTCCAGATGCACTACCGCACGCACACCGGCGAGCGGCCGTTCAAGTGCCGCATCTGCGGGCGCGCCTTCACCACCAAGGGCAACCTGAAGACGCACATGGCCGTGCACAAGATCCGGCCGCCCATGCGCAACTTCCACCAGTGCCCGGTCTGCCACAAGAAGTACTCGAACGCGCTCgtcctgcagcagcacattcGCCTGCACACCGGCGAGCCCACCGACCTCACGCCCGAGCAGATCCAGGCCGCCGAGATACGCGACCCGCCGCCCTCCATGATGCCCGGCCACTTCATGAACCCcttcgccgccgccgccttcCACTTCGGCGCCATGCCCGGCGGCGGACCCGGAGCTCCGCCCGCAGGACTTCCCGGTGGGCCGCACAACGGCACCCTGGGCTCGGAGTCGTCGCAGGGCGATCTCGACGACAACATGGACTGTGGCGACGGCGAGGGCGACGCGGACGCCGATGGCGACGCGGACGACTTCGACGACGGCTCGTCCGAGCACCTGTCGAACAACAACGAGTCGGCGAGCGAGGAGCGACCGCGTTCCGGCGACGACTTCAAGGCGCTGCTCTTCGAGCAGAAGCTGCGCATCGACCCCACCGGCGTGGTTAACATCCACGGCCATGCGCATCCGCATGCTCGTCCGCGCTCCGCCGCGAACTCCGTTGGCTCTGTCTCAGCCTCGGCCTCGCCCTCCGCCCCCACCAGTCCCAGCTCGCAGCCCAAGCCCGGCTGCTCGCCGGCGCGATCCCTCTCGGAGGCCTCGCAGGGCGCCCTCGACCTGACGCCGCGCGCCGCGCCCCCCTCCCTGGGCACCGCTGGCTCCAGCTCGCGTTCGCCGCtcccactgccgctgccactcgCCGTGGAGCGCAAGGAGAAGACGCTGAGTCCGCTGAGTCAGgaacgccagcagcaggcaccaGCGCGCAGTCCGAACGCGCTGCTCTcctcgccgctgccgccctcGGTGGGCATCGACTGCCTGCCTCCCGGACTGCAGCaccacctgcagcagcagcaccagcacctcatgcagcagcaggctgcagtggcagcagccgccgccgcccagcaccaccaccaccagatGCAGCAGCACGCCGCCGCGCTGCACCAGCACCAGGAGCAGCTGCGTCGCGAGGCGCAGGAGGTGCAGCAGAaggcggccgccgccgccgcagctgccgcagccgcgGCCGCCGTGCAGCGTCAGACGTCGCCGCAGCCGGGGGCGCGGGGCGGCGCGGAGGCGGGCGCGGCGAGTGGAGGGCCGGCGAATCCGCTGATGGCGGCGCGTCCGCCGTTCGGGATGTTCCCCAACCTGCCCATCTTTCCGCCGGCGACGACGCAGAACATGTGCAATGCGATGAACCAGATCGCGCAGTCCGTGATGCCGGCGGCGCCGTTCAATCCGCTGGCGCTGAGCGGCGTGCGCGGCAGCACGACGTGCGGCATCTGCTACAAGACATTCCCCTGCCACTCTGCGCTCGAGATCCACTACCGCAGCCACACCAAGGAGCGGCCCTTCAAGTGCAACATCTGCGACCGAGGCTTCACCACCAAGGGCAACCTCAAGCAGCACATGCTGACGCACAAGATACGCGACATGGAGCAGGAGACGTTCAGGAATCGCGCAGTAAAGTATATGAATGAGTGGAGCGAAGAGCGCGAATAG
Protein Sequence: MKNQPSNVLCAMRSDFKDNHQETINKMIQFGTVKYGIVKQLKDRARSADKEIASDQEDNGACSPLTAATASASADNSPSPSRSPARHSEDELELESAAEAALEDHNHNHNHNHNKLQMTKHELLEQPTPRSPAAATALSEQAAAQPANTEQDKEQEDIDVEMQEEQEQEEEEEEKPLSTTTTTATTTATATTTSSAAGAGVTAGAGAGAAPVTLEAIQNMQMAIAQFAAKTIANGASGADNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLALNQVKPSEEEVDPEPEVDAEEELEPEEREDGETDTYEEEERIADMELRQKAEARMAESKARQHLINAGVPLREHSVSASSSSSSVPTADADSLKRKRERERDEDAAGRASGKPRELARDALSQLKDMENMPLPFGSDLASSIITHHDDAPEPNSLDLLQKRAQEVLDSASQGILANNMADDFAFGDKTGDGKGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPDSSPTHSPAPVPAPAPSTPSQPSSSQVPPAFPGLQGLYRPPMELLKSLGAAAAGGSAGLPFFPQMPGLGAALHQELPTDLRKSSAPSSPHETAAGLGPVKTELLEDEKHESALAADNAELEVDGEPELEPEPLPLEVRIKEERLDEDPEQDHPVHLHAAQSEGSGRRSPSPAASSSPPLLARQQHASAMLGYPPVVQPMQPAASMHAQCSPGSQAHLEQLPTPGQLPPTMPHHRDDFFAERFPLNFTTKTLSPEHHSPIRSPASHGHQHGHPHGHAHSHAHAHIPRSPFFNPIKHEMAALLPRPHSNDNSWENFIEVSNTSETMKLKELMKNKKISDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMMPGHFMNPFAAAAFHFGAMPGGGPGAPPAGLPGGPHNGTLGSESSQGDLDDNMDCGDGEGDADADGDADDFDDGSSEHLSNNNESASEERPRSGDDFKALLFEQKLRIDPTGVVNIHGHAHPHARPRSAANSVGSVSASASPSAPTSPSSQPKPGCSPARSLSEASQGALDLTPRAAPPSLGTAGSSSRSPLPLPLPLAVERKEKTLSPLSQERQQQAPARSPNALLSSPLPPSVGIDCLPPGLQHHLQQQHQHLMQQQAAVAAAAAAQHHHHQMQQHAAALHQHQEQLRREAQEVQQKAAAAAAAAAAAAAVQRQTSPQPGARGGAEAGAASGGPANPLMAARPPFGMFPNLPIFPPATTQNMCNAMNQIAQSVMPAAPFNPLALSGVRGSTTCGICYKTFPCHSALEIHYRSHTKERPFKCNICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAVKYMNEWSEERE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -