Basic Information

Insect: Drosophila rubida
Gene Symbol: ct
Assembly: GCA_035046165.1
Location: JAWNOF010000023.1:11701121-11733370[-]

Transcription Factor Domain

TF Family: CUT
Domain: Homeobox|CUT
PFAM: PF02376
TF Group: Helix-turn-helix
Description: The CUT domain is a DNA-binding motif which can bind independently or in cooperation with the homeodomain, often found downstream of the CUT domain. Multiple copies of the CUT domain can exist in one protein (eg Swiss:P10180).
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 7.2e-27 5.6e-23 80.5 0.0 3 72 1167 1237 1165 1242 0.95

2 3 7.2e-32 5.5e-28 96.6 0.0 3 77 1674 1749 1672 1751 0.96

3 3 4.4e-31 3.4e-27 94.1 0.0 3 76 1963 2037 1961 2040 0.96

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	7.2e-27	5.6e-23	80.5	3	72	1167	1237	1165	1242	0.95
2	3	7.2e-32	5.5e-28	96.6	3	77	1674	1749	1672	1751	0.96
3	3	4.4e-31	3.4e-27	94.1	3	76	1963	2037	1961	2040	0.96

Sequence Information

Coding Sequence: ATGactttaaaaCGCGCTACTCTAGCCGAGAAGGAAGTGAACACACTCAAGGAGCAACTGTCCACAAGCACGcccggcagcaacagcgacagcaacagcaacagcgacaacaccACAGAAAcagcttcaacagcagcagcagcagcagcagcggcagcagcagcagcagcagcggcagcggcagcagctctgATCAAGAACGAGGAGGAGGCAGGGCAGGGCAACGGGACGAGCGAGAGCGATAGCGACAAGCTGCTGAACAGCTCGATCGTTGCGGCGGCGATAACGCTGCAACAGAACGGCGGCAATCTGCTggccaacacaaacacaccgtcgccatcgccgccgTTGCTcagcgccgagcagcagcagcagttgcagagCACTCTGCAGaacggcgtcggcgtcggcgtcggcggcgccTGCCTGAATCCCAAGCTCTTCTTCAACCACGCCCAGCAGATGATGATggaggcggcagcggcagcggctgctgcggccgccgcggcagcccagcagcaacagcagcaacagtcgcccCTGCACTCGcccgccgccacagcagccaacGTGAGCAACGTGAGCAacgtgagcagcagcagcgcgacaCAAGCGGCCGCAAACACAGCGACAGCCAcgactgcagcaacagttgctggcattgccgagccaacagcaacagcaacagcagcagcaacaacagcaacggccacCAGCAATTGCCACAgcgccgaggaggaggaggaggaggacgaggaggacgcCTCGATGCAGTCGAATGTGGCGCACGCCGACGGCgagctggacgacgacgacatggAGCTGGAGCGCGACCCAGCGGCCcacgacagcggcagccatgtggcaagtgcaactgctgctgagcCGGCTGCAAGAACTGAGAGTGTTGCCGACGCGTCTGCGGCGCGGGACGAGAACGCGGCCGAGCCGGCGGACGAGGAGGCTGCGGAGGCGCACGACGCAGACGAAGACGATGAGGAAGCTAGTTTAGCTGTTAGCaataatcacaacaacaacaacaacaacacggaTAGCTGTAGTCGCAAGAAGAGCGAGGCGCAACATGTTGCACTGCGTGATAGCAATAGTGTGAGTGAGCAGCATGTGCCGCACGGCctcgaccacgacgacgacgacgacgattgcgccaacaacaacaacaacaacaacaacaacaacagcaatagcaacaacaacaacaacaacacgaatgagaagcgcaagaagcgcagcaacaacaacaacaataacaacaacaacaaccagcccGCTGTTCTACTAGCTGCCAAAGACAAAGAGATTAAAGCACTGCTGGATGAGTTGCAACGCCTGCGCGCCCTGGAGCAAACTCACCTGGTACAAATCCAACGGCTCGAGGAGCACTTGGAGGTGAAGCGACAGCACATCATGCGTCTGGAGGCGCGTCTGGACAAGCAACAGATCAACGAGGCGTTGGCCGAGGCAACTGCATTGGCCGCCGCCGTCAATGCGgcagccacaaacaacaacaacaacaacaataacaacaacagcaacagcaatatcaacaacaacaacaacaacaaccacagcagccagagcagcgaaCACAACAATGAGGCGACGACTCAAGATCTGACATCGTCCCATCAGCATAATgtcgatgatgacgacgacgatgaccGCGACGATCATGATAACGAGCAGcgcgacgccgacgacgacgaggacatGGAAATCaccagcaacgagcagcagcagcagcagcagcagcaacagcagcaatcggTTGCCAACAATCGgcacgaggacgaggaggaggacggcGAGGAGCACGACGCCGAGATGTCCAATGCCACAGAGACAGCGGAAAGCAATGAGCTGAAAATCAAAAAGGAGCACCACGGTCCACTGGACCTGAACGTGCTCAGTCCACAGTCGGcgctcgccgctgccgccgccgcagcagccgccgccgcctgcgccAACGATCCCAACAAATTCCAAGCTCTGCTCCTGGAACGCACCAAGGCGCTGGCTGCCGAGGCGCTCAAGAACGGCGCCAACgacgccgccaacgccaacagcgATGAACAAGAACGCGccacagcagtggcaacagcaacagtcgatGGTGCAGCTCAAGCAGCACTCGATGCCGGAGCACTCGCAGCAACAGCCCTGCCGCAACAGGCTGccacggcagcagccagctgcagcagcagcagcagcaagaaaagcGCAGCGGAAGCGCATGAAACTGAAACATTGCCAGCGGGCAACTTGCAGCCGAAGCTCGAGATCATTGACGCTGATGCTGACGaagccgatgccgatgccgatgctgatgccgatgaTGGCAACGCTCTCGCTGCCGGCGGCCAAACGCTGGAAGAGCAGCTGGTCAACAGCTACTGGAGGCGTGGCTTtgaaacgacaacagcagcagcagcagcagcagcaactgctgccggGAGCAAAACGCCAACAATTTATCAAAATGCCAATgcggtgcagcagcaactgttgccgccgcctccaccaccgccgccattgcagcagcagcagcagcagcagcaacagcagcagcagcaacaacagcactttgcctcgcaacaacaacaacaacaacagcaacaacaacactatcagcaacaacaacaacaacaacaacagcagcagcatggacCCTCGTCCACTGTGCTGCTCAGTCAATTGGTTAACTCAACTTTCTCACATGCCAATCACTCCTCTTGTTCCAATTCCAAATCGACTCGCCTAGATGCCGGACCACTGCACCCactccagcaacagcagcagcagcaccagctgccacaccagcaacagcagcaattgctgccgcagcagcagcaacatcacctcaacaacagcagcagcagcaacagcagcgcaactGGCAGCGATCCACTgagccaccaccaccaccagcaggcGCACCACCATGCCCACGGTcatggccagcagctgttgcacgccgcagccgcagcgcacCACCTGCACCACGGCGGCGACTCGAACTCCTCGAGCGCCAACAGCACACCCAACAGCACCGCCCAGCTGGCGGCGAGCATTGCCAACACGCTGAACGGCAACAAGTCGCTGCTGCaagcggccgccgccgccaacgtggccgccgccgccgtcgccgtggccgaggacaacaacaacagtctgACGCCGAACGCGAACGCagccgcggccgccgctgcgATGGCTGCACATGCTCAGCATGCGGCCGCCTTGGGGGCGCCCAACTTCTTGCCCAGCCTGCCCAGCTTGCCGGCGTTCCAGTTTGCGGCCGCCGCGGCCGCTGGCCAGGATGCACGCGCGCACTTCCGGTTCGCCGAtgcggagctgcagctgcagccgggcGTCTCGATGGCCGGCCGCTTGGGCGAGTCGCTGATACCCAAGGGCGATCCCATGGAGGCCAAGCTGCAGGAGATGCTGCGCTACAACATGGACAAGTATGCGAATCAGGCGCTCGACACGCTCCACATATCGCGGCGCGTGCGCGAGCTGCTCTCGGTGCACAACATCGGGCAGCGGCTGTTCGCCAAGTACATCTTGGGACTGTCGCAGGGCACCGTCTCGGAGCTGCTGAGCAAGCCGAAGCCGTGGGACAAGCTGACCGAGAAGGGGCGCGACAGCTACCGCAAGATGCACGCCTGGGCCTGTGATGACAACGCCGTCATGCTGCTCAAGTCGCTCATACCCAAGAAAGACTCTGGCCTGCCACAATACGCGGGacgcggcgctggcggcgatGATTCCATGTCCGAGGACCGCATCGCTCACATACTGAGCGAGGCCTCGTCGCTGATGAAGAGCAACGCCGTcgccgcacagcagcagcagcagcaacagcagcagcagcagcagcaggagctgcagcggcgccacGACGATTCGCACAGCAACGAGGACAGCAAGTCGCCGCCGCAGAGCTGCAGCTCGCCGTTCTACAAGGtcgagctgaagcagcagctgcagcagcagcagcaacagcagcagcagcaacagctgcacgTCTCCGAGCATGCGCAGCGCGAGCAGCGCGAagcggccgccgctgccgccgttgttgcacagcagcagcgcgagcagcGCGAACAGCGCGAGTCGCTGcaacgcgagcagcagcagcgactgcgccaCGAGGACTTGGCCCAGGACAAGATGGCGCGTCTCTACCAGGAGCTCATGGCGCGCACACCACGCGAAGCAACCTTCCCAAGCTTCTTGTTGTCGCCATTCCTAGGCGGCGCCGCGTGCATGCCCGGCGCAGCGGCCAATCCATTCCCCGCGGCCATGGCCGCCGACGAGAACATGCGGCACGCGTTCGAGCGCGAGATcgccaagctgcagcagcagcaccagcagcagcaacaggcgcaggcgcaggcgcaggccGCCAGCTTCCCCAACTTCTCCAGTTTGATggccctgcagcagcaggtgctCAACGGCGCACAGGATCTCTCGCTGGCCGGCAAGGAGATCAAGCTGAACGGCCAGCGCTCCTCGCTGGTCGACCAgcacagcggcggcagcagcagctgctccaagGACGGCGAACGCGGcgccggcgtcggcgtcggcggcgaTGACGAGCGCAGCCCGTTTCCCGCTCTGCCGCCCGTGCGCAAGTCCGAGGGCGGCAACACGCCGGCCCCATCGTCGGCAGCCCAGGCGGCCGGCAGTGCAGcgggcggcaacagcggcgccGCTGCGGTCGGCGCCAGCTTGTCGGGCGGCAGTGGCGGCAATCACGGCAGCAACTCGGCGGCGCCCAGTCCGCTGAGCAACTCGATACTGCCGCCGGCGCTGAGCAGCCAGGGCGAGGAGTTTGCGGCGACCGCGAGTCCGCTGCAGCGCATGGCCAGCATCACGAACTCGCTGATCACACAGCCGCCGGTGACGCCGCACCACTCGACGCCGCAGCGGCCCACCAAGGCGGTGCTGCCGCCGAtcacgcagcagcagttcgaCATGTTCAACAACCTCAACACCGAGGACATTGTGCGTCGCGTCAAGGAGGCGCTCTCGCAGTACAGCATCTCGCAGCGTCTCTTCGGCGAGTCGGTGCTCGGCCTGTCGCAGGGCTCCGTCTCCGATCTGCTGGCGCGCCCCAAGCCCTGGCACATGCTCACGCAGAAGGGTCGCGAGCCCTTCATACGCATGAAGATGTTCCTCGAGGACGAGAACGCCGTGCACAAGCTGGTGGCCAGCCAGTACAAGATCGCGCCCGAGAAGCTGATGCGCACCGGCAGCTACAGCGGCAGTCCCCAGATGCCCCAGGGCCTGGCCAACAAAATGCAGGCCACGCTGCCCATGCAGAAGATGATGAacgagctgaagctgcaggaGCCCCAGGCGCAGCACAtcatgcagcaaatgcaggCTGCCGCCGCCATGTCGGCggccatgcagcagcagcagcaggcggccgCCGCCCAGGCCGCTGCcgtgcagcaggcgcaggccCAGgccgtgcaacagcagcaccagcagcagcagcagcagcagcatcagcagcagcagcagagccagcagcagcagcagcagcaggcggccgccgcacaacagcagctgctgcaccacCAGAACATGCTGCTCACGTCGCCTGggctgccgccgcagcacGCGATCAGCTTGCCGGCAGCGACCACGCCCGGCGGCCAGTCGAGCGCCAGCGGcgcgggcagcggcggcgttggcaCGCCggtcagcggcagcggcggcgccggcggcgacAAGAAGCCCATGCTGATGCCGGTGCACGGCGGCGCACATGCGCCGAATGCGATGCGCAGTCTGCACCAGCACATGTCGCCCACGGTGTACGAGATGGCGGCGCTGACCCAGGACCTGGACACGCACGACATCACCACGAAGATCAAGGAGGCGCTGCTGGCGAACAACATTGGCCAGAAGATCTTTGGCGAGGCGGTGCTCGGGCTGTCGCAGGGCTCCGTCTCGGAGCTGCTCAGCAAGCCGAAGCCGTGGCACATGCTGTCGATCAAGGGTCGCGAGCCGTTCATTCGCATGCAGCTGTGGCTGAGCGACGCCAACAACGTggagcggctgcagctgctgaagaaCGAGCGACGCGAGGCGAGCAAGCGGCGCCGCAGCACCGGCCCCAACCAgcaggacaacagcagcgacacgTCCAGCAACGACACCAACGACTTCTACACCAGCAGCCCCGGACCCGGCTCCGTGGGCTCGTCGGTCAGCGGCGCGCCGCCCAGCAAGAAGCAGCGCGTGCTCTTCTCCGAGGAGCAGAAGGAGGCGCTGCGCCTGGCGTTCGCGCTCGACCCATACCCCAACGTGGGCACCATTGAGTTCCTGGCCAACGAGCTGAGCCTGGCCACGCGCACCATCACCAACTGGTTCCACAACCATCGCATGCGCCTCAAGCAGCAGGTGCCGCACGGCCAGCCCGGCCAGGACAATCCCATACCCAGTCGCGAGAACACCAATGCCACGCCCTTCGATCCCGTCCAGTTCCGCatactgctgcagcagcggctcgTCGAGCTGCACAAGGAGCGCATGGGCCTGAGCGGTGCGCCCATTCCCTACCCACCGTActtcgccgccgccgcgctgcTCGGCCGCAGTCTGGCCGGCATACCGGgcgcagctgcggctgctggcgctgcggctgctgcggccgccgcGGTGGGCGCTGCGGGCGGCGACGAGTTGCAGGCACTGAACCAGGCGTTCAAGGAGCAGATGAGCGGCCTCGACTTGTCGATGCCGTCGCTGAAGCGCGAGCGCAGCGACGACTATCAGGACGAACTGGAGCTGGACGCCAGCGGCCACAACATGAGCGACAACGAGTCCATCGAGGGCGGCCACGAGCCGGAGCCCAGCACCGTCTCCGACTACGAGAAGGCGCTGCAGAAGTCTGCGCTCGCCtcggccgccgctgccgccgcctaCATGAGCAATGCGGCACGCAGTTCGCGCCGCAAGCCCGCCGCGCCACAGTGGGTCAATCCCGCCGGCGCCAGCACACCCAACACAGCCGCCGGCGTTGTGGCGGCCGCagtggccgcagcagcagcggctgccgctgctggcgatAGCAGCGAACGCATCATCaatggcgtatgcgtgatgcaGGGCTCCGACTACAGTCGCGACGAGACCGACAGCCTCAAGGGCGCCGGCGATGCGGCTGGCAATGAGACGGAACACGATCAGCACGGCCAGCTGGAGATCGATCAGCGCTTCATGGAGCCCGAGGTGCACATCAAGCAggaagaagacgacgacgacgaccagcagcagcagcagcaacaacagcagcagcagcagcagcagcagtcggagGAGAGCGGGAGCGATGCGGCCGAGAAGCAGCTGAAGGTGATCAATGAGGAGAAGCTGCGCATGGTGCGTGTGCGACGTCTGAGCAGCAACGGCGAGGCCGAGGAGCACTGTGCTGCCGCACCGCAGTCGACGGCCGccgcaacgccagcagcggcagcagcagcggcagcggcggcggcggcggcggcagcggcagcggctgcgtgGAACTACTAA
Protein Sequence: MTLKRATLAEKEVNTLKEQLSTSTPGSNSDSNSNSDNTTETASTAAAAAAAAAAAAAAAAAAALIKNEEEAGQGNGTSESDSDKLLNSSIVAAAITLQQNGGNLLANTNTPSPSPPLLSAEQQQQLQSTLQNGVGVGVGGACLNPKLFFNHAQQMMMEAAAAAAAAAAAAAQQQQQQQSPLHSPAATAANVSNVSNVSSSSATQAAANTATATTAATVAGIAEPTATATAAATTATATSNCHSAEEEEEEDEEDASMQSNVAHADGELDDDDMELERDPAAHDSGSHVASATAAEPAARTESVADASAARDENAAEPADEEAAEAHDADEDDEEASLAVSNNHNNNNNNTDSCSRKKSEAQHVALRDSNSVSEQHVPHGLDHDDDDDDCANNNNNNNNNNSNSNNNNNNTNEKRKKRSNNNNNNNNNNQPAVLLAAKDKEIKALLDELQRLRALEQTHLVQIQRLEEHLEVKRQHIMRLEARLDKQQINEALAEATALAAAVNAAATNNNNNNNNNNSNSNINNNNNNNHSSQSSEHNNEATTQDLTSSHQHNVDDDDDDDRDDHDNEQRDADDDEDMEITSNEQQQQQQQQQQQSVANNRHEDEEEDGEEHDAEMSNATETAESNELKIKKEHHGPLDLNVLSPQSALAAAAAAAAAAACANDPNKFQALLLERTKALAAEALKNGANDAANANSDEQERATAVATATVDGAAQAALDAGALAATALPQQAATAAASCSSSSSKKSAAEAHETETLPAGNLQPKLEIIDADADEADADADADADDGNALAAGGQTLEEQLVNSYWRRGFETTTAAAAAAATAAGSKTPTIYQNANAVQQQLLPPPPPPPPLQQQQQQQQQQQQQQQHFASQQQQQQQQQQHYQQQQQQQQQQQHGPSSTVLLSQLVNSTFSHANHSSCSNSKSTRLDAGPLHPLQQQQQQHQLPHQQQQQLLPQQQQHHLNNSSSSNSSATGSDPLSHHHHQQAHHHAHGHGQQLLHAAAAAHHLHHGGDSNSSSANSTPNSTAQLAASIANTLNGNKSLLQAAAAANVAAAAVAVAEDNNNSLTPNANAAAAAAAMAAHAQHAAALGAPNFLPSLPSLPAFQFAAAAAAGQDARAHFRFADAELQLQPGVSMAGRLGESLIPKGDPMEAKLQEMLRYNMDKYANQALDTLHISRRVRELLSVHNIGQRLFAKYILGLSQGTVSELLSKPKPWDKLTEKGRDSYRKMHAWACDDNAVMLLKSLIPKKDSGLPQYAGRGAGGDDSMSEDRIAHILSEASSLMKSNAVAAQQQQQQQQQQQQQELQRRHDDSHSNEDSKSPPQSCSSPFYKVELKQQLQQQQQQQQQQQLHVSEHAQREQREAAAAAAVVAQQQREQREQRESLQREQQQRLRHEDLAQDKMARLYQELMARTPREATFPSFLLSPFLGGAACMPGAAANPFPAAMAADENMRHAFEREIAKLQQQHQQQQQAQAQAQAASFPNFSSLMALQQQVLNGAQDLSLAGKEIKLNGQRSSLVDQHSGGSSSCSKDGERGAGVGVGGDDERSPFPALPPVRKSEGGNTPAPSSAAQAAGSAAGGNSGAAAVGASLSGGSGGNHGSNSAAPSPLSNSILPPALSSQGEEFAATASPLQRMASITNSLITQPPVTPHHSTPQRPTKAVLPPITQQQFDMFNNLNTEDIVRRVKEALSQYSISQRLFGESVLGLSQGSVSDLLARPKPWHMLTQKGREPFIRMKMFLEDENAVHKLVASQYKIAPEKLMRTGSYSGSPQMPQGLANKMQATLPMQKMMNELKLQEPQAQHIMQQMQAAAAMSAAMQQQQQAAAAQAAAVQQAQAQAVQQQHQQQQQQQHQQQQQSQQQQQQQAAAAQQQLLHHQNMLLTSPGLPPQHAISLPAATTPGGQSSASGAGSGGVGTPVSGSGGAGGDKKPMLMPVHGGAHAPNAMRSLHQHMSPTVYEMAALTQDLDTHDITTKIKEALLANNIGQKIFGEAVLGLSQGSVSELLSKPKPWHMLSIKGREPFIRMQLWLSDANNVERLQLLKNERREASKRRRSTGPNQQDNSSDTSSNDTNDFYTSSPGPGSVGSSVSGAPPSKKQRVLFSEEQKEALRLAFALDPYPNVGTIEFLANELSLATRTITNWFHNHRMRLKQQVPHGQPGQDNPIPSRENTNATPFDPVQFRILLQQRLVELHKERMGLSGAPIPYPPYFAAAALLGRSLAGIPGAAAAAGAAAAAAAAVGAAGGDELQALNQAFKEQMSGLDLSMPSLKRERSDDYQDELELDASGHNMSDNESIEGGHEPEPSTVSDYEKALQKSALASAAAAAAYMSNAARSSRRKPAAPQWVNPAGASTPNTAAGVVAAAVAAAAAAAAAGDSSERIINGVCVMQGSDYSRDETDSLKGAGDAAGNETEHDQHGQLEIDQRFMEPEVHIKQEEDDDDDQQQQQQQQQQQQQQQSEESGSDAAEKQLKVINEEKLRMVRVRRLSSNGEAEEHCAAAPQSTAAATPAAAAAAAAAAAAAAAAAAAWNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00520420;
90% Identity: iTF_00589447;
80% Identity: iTF_00589447;