Basic Information

Insect: Drosophila robusta
Gene Symbol: SCRT1
Assembly: GCA_004143805.1
Location: SCDV01001680.1:12-4559[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.1e-07 2.6e-05 25.0 1.5 1 23 529 551 529 551 0.99

2 5 0.00063 0.079 14.0 0.3 2 23 561 582 560 582 0.97

3 5 1.4e-05 0.0017 19.2 0.4 1 23 586 608 586 608 0.97

4 5 4.7e-08 5.9e-06 27.0 0.6 3 23 616 636 614 636 0.98

5 5 6.6e-05 0.0083 17.1 2.2 1 21 642 662 642 663 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.1e-07	2.6e-05	25.0	1.5	1	23	529	551	529	551	0.99
2	5	0.00063	0.079	14.0	0.3	2	23	561	582	560	582	0.97
3	5	1.4e-05	0.0017	19.2	0.4	1	23	586	608	586	608	0.97
4	5	4.7e-08	5.9e-06	27.0	0.6	3	23	616	636	614	636	0.98
5	5	6.6e-05	0.0083	17.1	2.2	1	21	642	662	642	663	0.94

Sequence Information

Coding Sequence: ATGCCGCGCTGCCTGATTGCCAAGAAGTGGAAGGCCTATCCCTGGCTGGATCGCACCGAGGATAACGCTCAGCCCGCAAGTACAGccacaacgacgacgacgccaacGTCGACGACGAGCGCCAGGGATGAGGAGCCTAATCTCAAGTCGCGCCGCTCCACAATGGATGACGACGAGGAGATCGATGTCGTTGGGGACAAGCTCCTGACCAAGTCGGACAAGCAACGCACAACTgcgacagccgcagcagcagcagcgacagcaacagcaacagcggcaccAACAAACGacagcacaacagcaacaacaacagccacaacatcaacagcaactacaacggCCAAGTGCTGGGGACCCAGCTCACCAACGGCGGGCACCACGGCGCCAAGTCCACCACCGCATTCGCCGGAGGCGGCCACGCGCGGGGCCACCAATGTCTACAATGGCTACACGCGGGAGCTGTCACCGCTGCACTACACTGCGTACCTGCCCAGAATGGAAAGCGAAATAACGGTTATACGGGCGGCAGCCACGGCGCTGgtggctgcagcagccaccAGTGGAGCTGGGGAGCAGCACTTGGCCGCCTATCAGACGCCGCCCTCGTCGACGACCTCGTCGCCGTCTTGTTCGCCCAGCGGCGCTGGCCATGGCGACAGATTCAGTCCCGGAGTGCACATCAAATCGGAGACCGGCCAGACGTCCAGCGAGCGCAAGTGCTTCAGCAGCACGGGCGCAACGCTGTCGCTGCCACCGAAGAAGAAGGACATCTACAGGCCGTACTCGCTGGATGACAAGCCCGCGCACGGCTACCGCAGGCGTGTGCCCGCCGAGGAGGACCTGCACGCGGCGCACGCCATTCTCGACCTGAGCGCCTCGACAGCTTTCCACCCGCCCACGCAGCCCCATCaactgcaccagcagcagttgccactacaacagcagcagcagcaacagcagcagcaacagcagcagacgcaacagccgcagcagcaacagcagcacacgCTTGggcacatccacacacacggCCACATGCACAGCCAGGTGCACACCCATGCCCACACCCATAGCCACAGCCATGCCCACTCCGCGCCGCTGGTGGAGGCGCATGCGCATGTGCGGAGTACGTCATCGATTGCCGAACTGgctgcagcagccagcgcGGTAAACGAACAACGCCCCTTGAGCAATGCCTCCAGCgcgagcagcagccacatgCCACCCAGCAGCCCggccagcagcaacggcagcaatggcagcagcaacagcagcagtaaccacagcaaccacagcagcagcagcagcaacgtgcAGAACGAGAACAgcaacaccaccaacaccaatCAGCTGCGCCCTGGCCACGgactgggcctgggcctgggtctCGGGCTGGGCCTGAGCCTCGCGCAGGAATGCGATGGCGATGCGGACGGCGATGCTGATGGCGATGGCAGCGGCGGGCAGGCAGCCAAGACCGTTGCGTACACCTACGAGGCCTTCTTCGTAAGCGACGGCCGCTCCAAGCGCAAACATGTGGCCGACCCGGCCGCGGTCGTCGTCCAGGATCAGCAGAAGACCAAGTACACGTGCTCCGAGTGCGGCAAGCAGTACGCCACCTCCAGCAACCTGTCGCGCCACAAGCAGACGCACCGCTCCCTCGACTCGCAGTCAGCCAAGAAGTGCCACACCTGCGGCAAGGCGTACGTCTCGATGCCGGCGCTGGCAATGCACGTGCTGACGCACAAGCTTTCGCACAGCTGCGGCGTTTGCGGCAAGCTGTTCTCGCGCCCGTGGCTGCTGCAGGGCCACCTGCGCTCCCACACGGGCGAGAAGCCCTACGGCTGTGCGCACTGCGGCAAGGCGTTTGCGGATCGCTCCAATCTGCGGGCCCACATGCAGACGCACTCGGTGGACAAGAACTTCGAGTGCAAGCGCTGCCACAAGACGTTCGCGCTCAAGTCGTACCTAAACAAGCATCTGGAGTCGGCCTGCCTCaaggacgaggaggagctcATGATGGCCATGTCGCTGCATGGCCACaccgacagcaacagcgagaGCGGCGCCAGTTTGGCATCGCCGCCCCACGAGTTTCTCGAGCGTGTCAAGGTCGAAGGCACGGCCAATGGAgttggcgtgggcgtgggagttggaggcggaggcggaggtgGTGTCACCTATGCCATGTAA
Protein Sequence: MPRCLIAKKWKAYPWLDRTEDNAQPASTATTTTTPTSTTSARDEEPNLKSRRSTMDDDEEIDVVGDKLLTKSDKQRTTATAAAAAATATATAAPTNDSTTATTTATTSTATTTAKCWGPSSPTAGTTAPSPPPHSPEAATRGATNVYNGYTRELSPLHYTAYLPRMESEITVIRAAATALVAAAATSGAGEQHLAAYQTPPSSTTSSPSCSPSGAGHGDRFSPGVHIKSETGQTSSERKCFSSTGATLSLPPKKKDIYRPYSLDDKPAHGYRRRVPAEEDLHAAHAILDLSASTAFHPPTQPHQLHQQQLPLQQQQQQQQQQQQQTQQPQQQQQHTLGHIHTHGHMHSQVHTHAHTHSHSHAHSAPLVEAHAHVRSTSSIAELAAAASAVNEQRPLSNASSASSSHMPPSSPASSNGSNGSSNSSSNHSNHSSSSSNVQNENSNTTNTNQLRPGHGLGLGLGLGLGLSLAQECDGDADGDADGDGSGGQAAKTVAYTYEAFFVSDGRSKRKHVADPAAVVVQDQQKTKYTCSECGKQYATSSNLSRHKQTHRSLDSQSAKKCHTCGKAYVSMPALAMHVLTHKLSHSCGVCGKLFSRPWLLQGHLRSHTGEKPYGCAHCGKAFADRSNLRAHMQTHSVDKNFECKRCHKTFALKSYLNKHLESACLKDEEELMMAMSLHGHTDSNSESGASLASPPHEFLERVKVEGTANGVGVGVGVGGGGGGGVTYAM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00537740;
90% Identity: iTF_00496069;
80% Identity: -