Drob012924.1
Basic Information
- Insect
- Drosophila robusta
- Gene Symbol
- -
- Assembly
- GCA_004143805.1
- Location
- SCDV01006755.1:1-7193[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2e-09 9.2e-06 25.9 0.0 16 40 287 313 283 316 0.84 2 4 2.2e-14 1e-10 41.7 0.1 2 39 328 365 327 368 0.94 3 4 2.9e-18 1.3e-14 54.2 0.0 1 45 382 427 382 427 0.98 4 4 5.2e-20 2.4e-16 59.7 0.0 1 43 434 477 434 478 0.97
Sequence Information
- Coding Sequence
- atgacTAGTTTAGGCATGGGCATGAACGGCGGTCTGTTGGGCGTGCCCATGGGCTTCCTGGACTTTACACCGGAACCACCAGCACCATCGGCCACACCAGTCACCGTTACGGAACATGTCGATCTATCGTGCAATCCCAGCACCGATACGCGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCATTTGGCTCAGCAAATCCATCGGCTCGATCAATCTCCCATGCACTCGATAGCGCACCATCATGCAACTGGCGACGAGAGCAACTCGAATCTGGTGCAGCACATCAAAAGCGAGGTGATTGAGGCCAAACACTTGGCgcatgtgcagcagcaacaacagcagcaacaacaacaacagcagcagcagcagcaacagcaacagcaacagcaacatgcacatcatcatcagcatatGCACGCTCAGCAATTGTTGGCGCAgagtcagcaacagcagcagcagcagcagcaacaccaacaacaacaggcggcGGTGCATGCAGCACAGCATGCAGCGCATGCCACGCACGCGGAAATCGGTGGCGCTACTGTCATGGAGATTGATCCGAGCCAGATCAAGCATGAGCCTGGCATGATTATAACGCCAGAGATTGTCAATATGATGTCCACAGCGCATATGGACATGTACAACTCGGATACGAGCGAGGACTCAATGATGATCGCCAACGGTTCGCCGCACGATCAGAATGAGCCGcattatacaaatttggaTCAGCAGCACGGCGGCCTGGGTGGCAGCGTTTGCGGCCCCGGCGccggtggtgttggtggtggtggcggcatTGGTGGTGGTAGTGGTAGTGCTGGCGAGAAAGATGCATTAAAGAATCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATACCATCAACGACCTTATGGCAGCGTGCTCATCGTTTGGGCATCGAAACGCCTAAGAAGGAGGGCGGCACCAAATCGTGGAACGAGGATGCACTGCAGAATGCATTAGAGGCATTGCGTTCGGGTCAAATATCGGCGAATAAAGCATCGAAAGCGTTTGGCATACCCTCATCGACGCTCTACAAGATAGCGCGTCGCGAGGGTATTCGGCTGGCGGCGCCATTCAATGCCGCACCAACCACGTGGACACCCGAGGACTTGGAGCGTGCATTGGAGGCGATACGGGCCGGCAGTACGTCCGTACAAAAAGCAAGTGCCGAATTCGGCATACCGACAGGAACCCTTTATGGACGCTGCAAACGGGAGGGTATCGAACTGTCGCGTTCGAATCCAACACCTTGGTCCGAGGATGCCATGAACGAGGCATTGAACTCAGTGCGCGTCGGTCAAATGTCCATCAATCAGGCGGCCATACACTACAACCTGCCCTACAGTTCGCTCTACGGACGCTTCAAGCGTGGCAAGTACGATGTGGTAGCCAACACCAGTGGCGTTTCGCTGATCAACACCTCGGGCAATACGACCGGCAGCATTGAGATTATCGAGCATGCATTGAGATTATCGAGCATAGTCAGGAGAATTCGttgcatatgttgcagcaacagttcCCGTACAGTCCGTCGCCGCACCCGCCGACACCGCAGCATCACAGTGCGCCACAGCATCACAGTACGCCGCTGCATCATGGCACGCCGCAGCATCACAGTTCGCAGCAGGGGCCGCCGACGCCGCAGAATATGCAACAGCATGTGGTGCACATGCAGCAGTCGCCGCACCAGgggcaccaccagcagcagcagcagcacatgcAACAGGATGTGGTCACATCGAGCAGCCAGGTGGTCCAtagtcagcaacagcaacagcagcagcaacagcaacagcagcagcaacagcagcaacagcagcagcttcagcagaTCTATCAGCATCACGGCACGCCCGAGCGTAGTTGAGAATCACTGCACGCTGCGGCAATGA
- Protein Sequence
- MTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHATGDESNSNLVQHIKSEVIEAKHLAHVQQQQQQQQQQQQQQQQQQQQQQHAHHHQHMHAQQLLAQSQQQQQQQQQHQQQQAAVHAAQHAAHATHAEIGGATVMEIDPSQIKHEPGMIITPEIVNMMSTAHMDMYNSDTSEDSMMIANGSPHDQNEPHYTNLDQQHGGLGGSVCGPGAGGVGGGGGIGGGSGSAGEKDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGSTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLINTSGNTTGSIEIIEHALRLSSIVRRIRCICCSNSSRTVRRRTRRHRSITVRHSITVRRCIMARRSITVRSRGRRRRRICNSMWCTCSSRRTRGTTSSSSSTCNRMWSHRAARWSIVSNSNSSSNSNSSSNSSNSSSFSRSISITARPSVVENHCTLRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -