Basic Information

Insect: Drosophila rhopaloa
Gene Symbol: -
Assembly: GCA_018152115.1
Location: JAECXI010000003.1:2445352-2447154[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 1.6 1.2e+02 3.4 1.1 10 23 258 270 250 270 0.77

2 7 0.069 5 7.7 1.3 1 23 278 300 278 300 0.94

3 7 0.00066 0.048 14.1 1.3 1 23 306 329 306 329 0.96

4 7 2.1e-06 0.00015 21.9 1.3 1 23 334 357 334 357 0.91

5 7 2.7e-05 0.002 18.4 1.9 1 23 363 386 363 386 0.97

6 7 0.013 0.95 10.0 3.4 2 23 394 416 393 416 0.95

7 7 0.014 0.99 9.9 0.6 1 21 422 442 422 443 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	1.6	1.2e+02	3.4	1.1	10	23	258	270	250	270	0.77
2	7	0.069	5	7.7	1.3	1	23	278	300	278	300	0.94
3	7	0.00066	0.048	14.1	1.3	1	23	306	329	306	329	0.96
4	7	2.1e-06	0.00015	21.9	1.3	1	23	334	357	334	357	0.91
5	7	2.7e-05	0.002	18.4	1.9	1	23	363	386	363	386	0.97
6	7	0.013	0.95	10.0	3.4	2	23	394	416	393	416	0.95
7	7	0.014	0.99	9.9	0.6	1	21	422	442	422	443	0.94

Sequence Information

Coding Sequence: ATGAGCAACCGCCTTGCGATGAACCTGGACATGTCCGAGATAATCGAGTTCGTGCTGCCCGCCAAGAGCGAGTACTCGGACGACGACGGCGGAGGAGCTGGTGCCGTGGGCATGGTGGACGCCAGCGAGGATGCCACATACGTGGTTCTGGACGGCCTGGGCAACGAGTACGACGAGGAGTTCCTGATCGTCAACGAGGACGGCGTGGAGGGCGAACTGCTGGTGGACGAGGAGCTGCAGGGTCTGCTGGTGGGCTCCCGGGTGAAGGAGTCATCGCTAGACGAGCAGAATGAGCAGTTTGTGGTCACCGAGCTGCAGCTGAGCGAAATGGAAGAGCTGGTGGAGGAGGAACAGGAGCAGGGCGACTACGAACACGAGCTCAGCTATGCCCATCTGCCCATTGCCGAGGAGCCAGAAGATCTGGATATGGATGCACCTTCGTCGCCCTCCCCGCCGCCATCACCAACGCCACCACCGCCAACGGTGCCTTCTGTGCAGCCTGCTGGCAAAATGAGATCTTCATCCGCCCTCCAGATCGCCATACGCAGCTTTGCGAGCCAAAATGACGACGATGGCAGCGTCAAGGATGTGAAGCCCAGCGAAAAGATGTTGGATGAGTTTAAGGGACCGCGCCGCTACTTGCTCTTCGACGACCTGATAGCCACCATCGTGGATTTTGACGACGACAGCACACCCATTGTGGAGTTCTCCATGATCACCGACATGCTGGACGAGAAGCTGCCAGTGGAATGCGGTATCTGTCCGGATGTGATGCACAAGACCAAGCTGTCCAAGCACCAGAAGACCCATTTAGTGGCGGGGACCAATCGCTACGCCTGCATCTACTGCACGGAAACGTATCGCGACTGCAAATACCTGGCCGGACACGCTCGCCGCCACATGGGCATCCGTCCGTACGTCTGTGAACTGTGCACTCTTTACTTCTCCACCAAACAGGACCTACGCGTGCACAATCAGCGGCGTCATCTGGAAAAGGAGCATATCTGTGAGATGTGCGGCAAGACATTCGCCCAAAATACCCAGCTTAAGCGTCACCGCGAGGCGACGCACGAGAAGAAGCGACGATTCCAGTGCCAATACTGTCAGAAGGCCTACTACAAAAACTTCTCGCTGCAGGAGCACATACGCAACGTCCACATGGGCAAGCGAAGGATGTTGAAGTGCCCGTTCTGCGGCATGCAGTGCCGCGATGCCCACAAAATGGCCCGCCATCGCAAGGAGATGCACCTGAGCCAGGGCACGTATGTGTGCCACCTGTGCCAGGAGGAGTTCACCGACATCAACTACTTCGATGCCCACAAGCGGTCCATCCAGTGCCGGAGCAACACGCGTCGCTTTGTGAATAATAGGGATGGTGATGAAAATCAGGGAGGCTCCGGCTCGGGATCTGTTTCAGGTGGGATGATGGACGGCCAGGAGGATGATGACGACGGCATGGGCATGCTGGAGGAGGAGTACGACGAGGACGACGGTCTGCTGGTGGAGGAGGGCCAGGCGGAGGAGCAAGTGACAACCAATGGGCATTACATCAACGAGGGCGAGGCGCAGTACGTCCAGATTTCGGACTACGATGATCAGCGCCTGTTGGTGGAGAACGCGGTCACCGAGGAGGACGACGAGGATGTCGAGGAGGAGCTGCTCAGCGAGGAGCAATACTTTAATGCTGTACAACAGCACCATCACCACCAGCAGCAGCAGATCCACCCCCAGCTGGATCCACATGGTCAGGACTACCACGACGAGCTGATATATGAAATCACCTTGAAGACTGAGGATAATTGA
Protein Sequence: MSNRLAMNLDMSEIIEFVLPAKSEYSDDDGGGAGAVGMVDASEDATYVVLDGLGNEYDEEFLIVNEDGVEGELLVDEELQGLLVGSRVKESSLDEQNEQFVVTELQLSEMEELVEEEQEQGDYEHELSYAHLPIAEEPEDLDMDAPSSPSPPPSPTPPPPTVPSVQPAGKMRSSSALQIAIRSFASQNDDDGSVKDVKPSEKMLDEFKGPRRYLLFDDLIATIVDFDDDSTPIVEFSMITDMLDEKLPVECGICPDVMHKTKLSKHQKTHLVAGTNRYACIYCTETYRDCKYLAGHARRHMGIRPYVCELCTLYFSTKQDLRVHNQRRHLEKEHICEMCGKTFAQNTQLKRHREATHEKKRRFQCQYCQKAYYKNFSLQEHIRNVHMGKRRMLKCPFCGMQCRDAHKMARHRKEMHLSQGTYVCHLCQEEFTDINYFDAHKRSIQCRSNTRRFVNNRDGDENQGGSGSGSVSGGMMDGQEDDDDGMGMLEEEYDEDDGLLVEEGQAEEQVTTNGHYINEGEAQYVQISDYDDQRLLVENAVTEEDDEDVEEELLSEEQYFNAVQQHHHHQQQQIHPQLDPHGQDYHDELIYEITLKTEDN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00529847;
90% Identity: iTF_00515818;
80% Identity: -