Drho008115.1
Basic Information
- Insect
- Drosophila rhopaloa
- Gene Symbol
- -
- Assembly
- GCA_018152115.1
- Location
- JAECXI010000115.1:122048-125461[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.034 2.5 8.7 1.7 2 23 310 332 309 332 0.96 2 9 0.0043 0.31 11.5 0.6 3 23 390 411 389 411 0.95 3 9 8.1e-06 0.00059 20.1 1.1 1 21 424 444 424 445 0.96 4 9 0.057 4.2 8.0 1.9 3 23 454 475 452 475 0.94 5 9 4.1e-05 0.003 17.9 4.8 1 23 481 503 481 503 0.96 6 9 0.00065 0.047 14.1 0.8 1 23 508 531 508 531 0.96 7 9 0.29 21 5.7 0.2 2 23 538 560 537 560 0.94 8 9 1.9 1.4e+02 3.2 1.3 2 23 567 588 566 588 0.92 9 9 0.00068 0.049 14.0 2.3 1 23 593 616 593 616 0.97
Sequence Information
- Coding Sequence
- ATGGACGCCACCACATCCGCAGCGGATCCCGCGCTGGTGGCCATGAACATGTTGAATAAAAGTTCCAAGTGTCGAGCATGTCTGTCCGTGGACCGTAAAACCGTTCAACTGAGCGCCGAGATTCCAAACCTACAGAAGTCCCGCACCTACGCCCAGAGCCTGAAGCAGTGCACCAATCTTGACCTGCGTGTCATAAGTCCGGGTGGCTACCTGTGGCCCATGCAAATCTGCGTGCGCTGCTGCCGCGCCTTAGAGGTGGCCATGCACTTTGTCGAAATGGCCTTGGAATCGAATCTCAAGCTGTACGCCGAGGCCCAGAGCGTGAAGCTGCCCAGTCCCACCGGCGAACTGAAACGGAAGGCCAGCAGCGAGACGCTCCACTGGAATCAGTTTAGCCAGGAGTTCGAGCAGTTTGTTGAGGGCTACGAGGGGACGACGGGACCCATCGAGGAGAATGTCCTGTACATGCGAGGGGCCAAGATACCACGTCTGGATGCCGATGCGCCGAACAGCACGAAAACGCCTAAAGAAGATGAAATTATCCTTTTTGATGTCAAATATGACACCAACGATCTGGAGGAGGAGGACGAAAACGACGGCTCGGATGCCAAGAACAATGAGACTTTCTTCGAAAGCAGTATTACGCCTGAAGATGCAGCTATTACCACCTCAGTGGGCAGCCAAAGCGGCGAGAATAATAACAATTATAATTTCAATAACAAAAACGGCGAAATCTCGGATATCGAGTGCGATCTTATACAACGTGCTCTTTATATGACACTGAATGATGATGGCAGCAGTCAAAGTCCGAAAAAGGAAAAGTCCAACAATGAAAATCAGCTTAAATCCTGTGGGGGACAGGATCCTTCATCACCTTTACTCCAAGAGGCCACCTCTAGCAGTATGATGGCCAATATACCCCTCTTAAAATGCAATATTTGCCAATATACGCATACCGAAGCGGAGCAGCTGAGAAGTCATTACAAAAGTATTCACAAAATATCTATGGCCGAAGATGAAATAATTGGCCTAAACAAAAATCAAAACTTTAAGTGCCGACCTTGCAATAGTTATGAAACAAAAGACAGGAATGAAATGCAGAAACATCTAATAGATCACCATAAAATAGATGGGGATTTTGAAATGTACTGCTATATGCAGGCAAACTGTCCTGCTTGTGACAGGATATTCAAGGACCAGCGGTCGGCTAGGAAGCATTACACCAGGGTGCACACTCCGGTGCAGGTGGTAGTGTCGCCAACGGAGACATATGCGTGCAAGGTCTGCGACAAGGTGTTCAATCAAAAGGCCAGCCTTCATAGCCATCAGCGATTCTGTCAGGTGAAGGATTTTGTCCATTGCACCTTCTGCGATCAGGAGTTCAGTAGCATGCGCAAGTATGAGCTTCATCTGCAGCAACTGCATGCCGTGGAAACTCTACACGATTGTGAGATCTGTCACAGGAGCTTCAAGAGCGCCGACACCCTCACGATGCATCGAAAGCGGCACTCTGAGCGACACTTTCAGTGCGATAAGTGCTCGCTGAATTACGTTAACTCAGCGGAGTTGCGAGTTCACCACGAACGGGCCCACGTGAACGAGGAGCAGGTGAGTTGCCCTACCTGCGGCAGCCAGTTTCAAAACATGGTCCTGATGCGCGAGCACGAACAGAGGAGTCACCAGAAGCCGAAGGTCTGGCGCTGCGAGGTATGCAACTTTGAGACAAAGAACAGGTGGCGAAGGCGTCAACATCAGTACGAGCACAAGGAGTACCCGTACAGGTGTGAGAACTGCACCGTCGAATTTTCTGATCGCAGCAAATTCCGGCAACATTCCAAAAAGGTGCATGGCGTCGAGCTGAGCGACGAGCAGCTGGCCGAGATGTTCCGTGAGAAGAAGGGCTACACCAATCGACACGATGCATTCAACAGGTCAAACAACTCTTTGGAGATACCCGGTTTTCCGGAGGAGTGCTTCACAGAGTTGCAGAGCCTAGGCGTGGACTATGACGACATAACCACAGATCTCTTTGCCAGCTCCACCGCCCTAGACAACCTGCTAAACCTGATACCCTAA
- Protein Sequence
- MDATTSAADPALVAMNMLNKSSKCRACLSVDRKTVQLSAEIPNLQKSRTYAQSLKQCTNLDLRVISPGGYLWPMQICVRCCRALEVAMHFVEMALESNLKLYAEAQSVKLPSPTGELKRKASSETLHWNQFSQEFEQFVEGYEGTTGPIEENVLYMRGAKIPRLDADAPNSTKTPKEDEIILFDVKYDTNDLEEEDENDGSDAKNNETFFESSITPEDAAITTSVGSQSGENNNNYNFNNKNGEISDIECDLIQRALYMTLNDDGSSQSPKKEKSNNENQLKSCGGQDPSSPLLQEATSSSMMANIPLLKCNICQYTHTEAEQLRSHYKSIHKISMAEDEIIGLNKNQNFKCRPCNSYETKDRNEMQKHLIDHHKIDGDFEMYCYMQANCPACDRIFKDQRSARKHYTRVHTPVQVVVSPTETYACKVCDKVFNQKASLHSHQRFCQVKDFVHCTFCDQEFSSMRKYELHLQQLHAVETLHDCEICHRSFKSADTLTMHRKRHSERHFQCDKCSLNYVNSAELRVHHERAHVNEEQVSCPTCGSQFQNMVLMREHEQRSHQKPKVWRCEVCNFETKNRWRRRQHQYEHKEYPYRCENCTVEFSDRSKFRQHSKKVHGVELSDEQLAEMFREKKGYTNRHDAFNRSNNSLEIPGFPEECFTELQSLGVDYDDITTDLFASSTALDNLLNLIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00605109;
- 90% Identity
- iTF_00529849; iTF_00494667; iTF_00512281;
- 80% Identity
- -