Basic Information

Insect: Drosophila rhopaloa
Gene Symbol: sna
Assembly: GCA_018152115.1
Location: JAECXI010000002.1:14970850-14972525[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 4.5e-05 0.0033 17.7 2.2 1 23 241 263 241 263 0.97

2 5 6.9e-06 0.0005 20.3 0.6 1 23 276 298 276 298 0.98

3 5 1.9e-08 1.4e-06 28.3 0.4 1 23 302 324 302 324 0.97

4 5 1.4e-09 1e-07 31.9 0.3 1 23 330 352 330 352 0.99

5 5 1.8e-05 0.0013 19.0 1.2 1 19 358 376 358 379 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	4.5e-05	0.0033	17.7	2.2	1	23	241	263	241	263	0.97
2	5	6.9e-06	0.0005	20.3	0.6	1	23	276	298	276	298	0.98
3	5	1.9e-08	1.4e-06	28.3	0.4	1	23	302	324	302	324	0.97
4	5	1.4e-09	1e-07	31.9	0.3	1	23	330	352	330	352	0.99
5	5	1.8e-05	0.0013	19.0	1.2	1	19	358	376	358	379	0.94

Sequence Information

Coding Sequence: ATGGCCGCCAACTACAAGAGCTGCCCGCTGAAGAAGCGCCCAATTGTCTTCGTGGAGGAGCGTCTGCCCCAAACGGAGGCCTTGGCTTTGACCAAGGACTCGCAGTTTGGCCAGGATCAGCCGCAGGACCTCTCACTGAAGAGGGGACGCGAGGAGGAGTCCCAGGATTACCAACAGCCGGAGCCGAAACGTGACTATGTGCTGAATCTCTCCAAGACACCGGAAAGGATCTCCAACTCGTGTTTGCTGTCGCCGCCAGCGGAAGCCCAGGATTACCAACCCACCGATATCCATATGCGCGGCTTGACAGCAGGAACTACGGGCTATACCACCACCGCCAGTCCCACGGTCAATCCCTTCCAGTCCGCCTTCGTGATGGCCGCCGGCTGCAATCCCATCTCAGCGCTGTGGAGCAGCTACCAGCCCCATCTGGCCGCCTATCCATCGCCGGCCAGCTCGATGGCCTCACCCCAGTCGGTGTACAGCTACCAGCAGATGACGCCGCCCTCCAGTCCGGGATCCGATCTGGAAACCGGCTCCGAGCCGGAGGATCTGTCCGTGAGGAACGACATCCCTCTGCCGGCTCTGTTCCACCTCTTCGATGAGGCCAAGTCGAGCAGCAGCGGGGCCAGTGTGAGCAGCATGTCGGGATACTCCTACAATCCGGCCATGAGTGCCTCGTCTGCGAATGTGGCCGCCAATCATGCCAAGAACTATCGCTTCAAGTGCGACGAGTGCCAGAAGATGTACTCCACCTCGATGGGTCTGTCGAAGCATCGGCAGTTCCACTGCCCGGCTGCCGAGTGCAACCAGGAGAAGAAGACGCACTCCTGCGAGGAGTGTGGCAAGCTGTACACCACCATCGGAGCCCTCAAGATGCACATCCGCACGCACACCCTGCCCTGCAAGTGCCCCATCTGCGGCAAGGCCTTCTCGCGGCCATGGCTGCTCCAGGGACACATCCGCACCCACACCGGCGAGAAGCCGTTCCAGTGCCCCGACTGCCCACGATCCTTTGCCGACCGCTCCAACCTGCGAGCCCATCAGCAGACCCACGTGGATGTGAAGAAGTACGCCTGCCAGGTGTGCCACAAGTCCTTCTCGAGGATGTCGCTCCTGAACAAGCACTCCAGCTCCAACTGCACCATCACCATTGCGTAG
Protein Sequence: MAANYKSCPLKKRPIVFVEERLPQTEALALTKDSQFGQDQPQDLSLKRGREEESQDYQQPEPKRDYVLNLSKTPERISNSCLLSPPAEAQDYQPTDIHMRGLTAGTTGYTTTASPTVNPFQSAFVMAAGCNPISALWSSYQPHLAAYPSPASSMASPQSVYSYQQMTPPSSPGSDLETGSEPEDLSVRNDIPLPALFHLFDEAKSSSSGASVSSMSGYSYNPAMSASSANVAANHAKNYRFKCDECQKMYSTSMGLSKHRQFHCPAAECNQEKKTHSCEECGKLYTTIGALKMHIRTHTLPCKCPICGKAFSRPWLLQGHIRTHTGEKPFQCPDCPRSFADRSNLRAHQQTHVDVKKYACQVCHKSFSRMSLLNKHSSSNCTITIA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00602797;
90% Identity: iTF_00565546;
80% Identity: -