Drho015752.1
Basic Information
- Insect
- Drosophila rhopaloa
- Gene Symbol
- RIM101
- Assembly
- GCA_018152115.1
- Location
- JAECXI010000167.1:7610854-7614655[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0044 0.32 11.5 0.5 1 23 208 231 208 231 0.96 2 11 0.00028 0.02 15.2 4.3 1 23 236 259 236 259 0.94 3 11 2e-05 0.0014 18.9 2.0 1 23 264 286 264 286 0.98 4 11 0.00088 0.064 13.7 4.2 3 23 327 348 326 348 0.95 5 11 0.0035 0.26 11.8 0.2 1 23 354 377 354 377 0.96 6 11 0.0014 0.1 13.0 0.4 2 23 388 410 387 410 0.95 7 11 0.00035 0.025 15.0 0.3 1 23 438 460 438 460 0.97 8 11 6.1e-06 0.00044 20.5 2.1 1 23 467 489 467 489 0.96 9 11 0.00022 0.016 15.6 0.1 2 23 496 517 496 517 0.97 10 11 0.00027 0.019 15.3 1.3 1 23 524 546 524 546 0.99 11 11 6.3e-05 0.0045 17.3 3.3 1 23 552 575 552 575 0.98
Sequence Information
- Coding Sequence
- ATGGAAACGTGTCGCACCTGTGCGATTTCCATGTTTGTGTGCGACTTTGAGAATGGCAGCAACAACAGCCACTTCCTGGACATCCAACACCCCAACTGCTGGCCAAGCGAAATGGCCCAAATACGACTGCAGTTTGTCAACTGGAATCTGAAGATCTCACCTAATGACGGATTGCCTCAGAAGATCTGCAGCGACTGCTTCACCAAGTTCTGCTCGATAAACGCATTCCGAGTGGCCTGCCAGGAGGCGCAGTTGAAGCTGTCCAACATCTACGACAAGATCGACGCCAGCAGCCTGGATGATGAACAACAGGAATATGTGGACCAAGAGGACGAGCATCAGGGAACAGAAACAACCAAACCAACAACGACGGTTTCAGCCGAAACACAACCAAACACTGCCACTGACCCCATAGAAATTTTTGTGGATGCCGTAGACATCGACGAGGAAGAGGAGGAGGAGCAGGATGACGAAGCTGAGGAGAAACCGCTGGAGGAAGCTGTTCGTCCCGAACTGACCATTAGCTATGCCTGCAAGTTCTGCCTGCGGCCGCAAGAAAGCTACCAGCTGCAGCAACTTTTGCTGGAACACATCAACGCCAATCACGATCCTGAGCAGCCGTACAATTGTCCGGAGTGTGAGGCCTGCTTTCAGGATGCCGCCTCGAGGACCGTTCACCTGAAAAACAGCCACGTGGAGAAGCAACACGCCTGCGAGGTATGCGGCAAGAAGTACGGCGATCGGCACAATCTGCGGCACCACGTCGAGAAGTACCATTCGGAGACGGACTTCGAGTGCGGGCTTTGCGAGAAGCGCTTCTACACCCGCAAGAGCCTCAACTACCACATGAAGTGGCACAATCCGGACCGCCAGTTCAAGTGCCGCCACAGCGGCTGCGAGCGGCTCTTTATCAGCCAGCGCCATCTCATGTGCCATGAGGCCACCCACACGGGCACCACCGCAAGGAAGAGCGAGCACTGCGGCTTCTGTGGAAAAACATTTATACATTTGAAGACCCTTCGCTGGCACATCTTTAGACAACACGGCGGAGAAAAGCCCTACAAATGTGCCAATTGCACGGAGGTTTTCGCATCCTATGCGGAGAAGCGGATTCACATGCTGGAGCGGCACAGGGAGAACCTAACTCCCATCGAGCGAAGCGAGTGCATGCTGTGCCGTCAACCCTTTTCCAGCGAGCAGGATCTAATCCACCACATGTCCGTGGAGCACCTGCAGGGTCCTGCAGCTCCGGTGATCGCCAACAACAAGCGGGTGCTGCAGCAGAAGCGGGAGCGCCAGTACTCTGGACTCTTTCAGTGCGGCAGCTGCACGCAGCGGTTCAACATGAAGTCGGCGCTGGAGCGGCACGCCGCCGTCCACTCGGAGAAGGACCGCCCCCACGCCTGTCCGCAGTGCTCCAAGCGGTTCAAGCGCGCCCAGGACATGAAGTGGCACATCAAGACGCACGAGAAGGAGAAGCCTAATGTGTGCGATGTCTGCGGCAAGGCCTTTGCCCTCAAATATGTTCTTACTCAGCACCGGTTGAGTCATGAGGTCTTGGAGAAGAACTTCAAGTGTAACGTTTGCGGTCGGTCCTATCTGTTTGAGAAATCTTTGCGGCTGCATCAGCGGGTTCACACCGGCAAAACCTACTACAAATGCGATGTCTGTCAAGAAAGATTTGTCACGCACATTAAGCTTAAAACTCACATGCAAAAGACACACGCCTCTCAGCCACACTCTGCGGACCACCCTCTGGATGATCTGATCAACATTGTGATTTCCTAA
- Protein Sequence
- METCRTCAISMFVCDFENGSNNSHFLDIQHPNCWPSEMAQIRLQFVNWNLKISPNDGLPQKICSDCFTKFCSINAFRVACQEAQLKLSNIYDKIDASSLDDEQQEYVDQEDEHQGTETTKPTTTVSAETQPNTATDPIEIFVDAVDIDEEEEEEQDDEAEEKPLEEAVRPELTISYACKFCLRPQESYQLQQLLLEHINANHDPEQPYNCPECEACFQDAASRTVHLKNSHVEKQHACEVCGKKYGDRHNLRHHVEKYHSETDFECGLCEKRFYTRKSLNYHMKWHNPDRQFKCRHSGCERLFISQRHLMCHEATHTGTTARKSEHCGFCGKTFIHLKTLRWHIFRQHGGEKPYKCANCTEVFASYAEKRIHMLERHRENLTPIERSECMLCRQPFSSEQDLIHHMSVEHLQGPAAPVIANNKRVLQQKRERQYSGLFQCGSCTQRFNMKSALERHAAVHSEKDRPHACPQCSKRFKRAQDMKWHIKTHEKEKPNVCDVCGKAFALKYVLTQHRLSHEVLEKNFKCNVCGRSYLFEKSLRLHQRVHTGKTYYKCDVCQERFVTHIKLKTHMQKTHASQPHSADHPLDDLINIVIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00491676;
- 90% Identity
- iTF_00505570;
- 80% Identity
- -