Basic Information

Insect: Drosophila rhopaloa
Gene Symbol: ham
Assembly: GCA_018152115.1
Location: JAECXI010000002.1:11357763-11359412[+]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 1.3e-06 0.0022 17.9 0.3 12 41 312 338 307 340 0.84

2 3 7.8e-06 0.013 15.4 2.0 17 44 345 369 339 369 0.88

3 3 0.029 49 4.0 1.2 18 41 375 395 369 397 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	1.3e-06	0.0022	17.9	0.3	12	41	312	338	307	340	0.84
2	3	7.8e-06	0.013	15.4	2.0	17	44	345	369	339	369	0.88
3	3	0.029	49	4.0	1.2	18	41	375	395	369	397	0.86

Sequence Information

Coding Sequence: ATGAGAGTTATGAGAGAGAAAGACCACTCACCAAGAAAGATGCTTCCTAGCCCGAAACAGGGCTGCGTATACCCTGCCTTAGGATTAATACCCACATCGTATATATCACACGTACCTTATGATCTGGCCTCCTCGGCGGCGGCAACATCCTCGTCCTCATCGTCGTCCTCACCGACGACGACAACAACAACGACAACTGGCCGACAACTGCAACATCAGTCGCTGTCACAGTCGCAGCAGCAACATCAGCACTCCCACCAGCAACATCAGACGTTAAATCACCATGCCAAGGGCAAGAGAAGAAGCAGTTTCGATCAGCCGTTGGATCTGCGATTGGCCCACAAGAGGAAGACGGATTTGGCGGATCAAGGACCTCTGGAGGATGAGAACAGCAACCTGATTATGTTCGCCAGCGAACTGGCAGTGGCTCAGCAGAAGGAGAAGGAGCTGAACAACAATCACATAGCTGCCTCGCTGGCCGATCTGGGCTTTGATATGAGCCGGAAAATGCTGAGGGCCCTGAGGGAGGGCGGCGCAGGAGGAGGTGGAGGGGGTGGACCCCCCACCGGACCACCACTAACACCACCGCAATGTTCGATTCCTGCCGTGCATCCCACACTCCTAGAAGCCATGACCAAGAACTTGCCCCTGCAGTATCGCAATGTGTTCGCAGGAGTTCTGCCCGGCAAGGTGACCAGTCCGGTGGCCTCCAGTAGTCCCACCGGATCGGACTTCCCCTTCAGGCATCCGCTCAAGAAGTGCGAGCTCACCTGGCCGCCACCCACAGAACAGTTGCAACTGGAGCTGCCCCATCCGAATCCCAAGTTGTCGCCGGTCTTGCCGCATCCGCAACTGCAGGACTATCAGACGCGGAGGAAGAACAAGGCCAGGACAGCGGCCACGGGGGGCAATGCCACGCCCAATCTGCCGCAACGCAACAAGGATCGTTATACCTGCAAGTTTTGCGGCAAAGTCTTTCCGAGATCGGCGAATCTGACGCGGCATCTGAGAACGCACACGGGCGAACAGCCCTACAAGTGCAAATACTGCGAACGTTCCTTCAGCATTTCCTCGAATTTGCAGCGCCATGTGCGGAATATCCACAACAAGGAGAGACCCTTCAAGTGTGAGATATGTGAGCGTTGCTTTGGCCAACAGACGAACCTGGACAGGCATCTCAAGAAGCACGAATCGGATGCCGTCTCCTTGAGTGCCTTGTCGGGGGAAGAGGAACCCTAA
Protein Sequence: MRVMREKDHSPRKMLPSPKQGCVYPALGLIPTSYISHVPYDLASSAAATSSSSSSSSPTTTTTTTTGRQLQHQSLSQSQQQHQHSHQQHQTLNHHAKGKRRSSFDQPLDLRLAHKRKTDLADQGPLEDENSNLIMFASELAVAQQKEKELNNNHIAASLADLGFDMSRKMLRALREGGAGGGGGGGPPTGPPLTPPQCSIPAVHPTLLEAMTKNLPLQYRNVFAGVLPGKVTSPVASSSPTGSDFPFRHPLKKCELTWPPPTEQLQLELPHPNPKLSPVLPHPQLQDYQTRRKNKARTAATGGNATPNLPQRNKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYKCKYCERSFSISSNLQRHVRNIHNKERPFKCEICERCFGQQTNLDRHLKKHESDAVSLSALSGEEEP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00494515; iTF_00588410; iTF_00494652; iTF_00512271; iTF_00512131; iTF_00565661; iTF_00565500;
90% Identity: iTF_00494515; iTF_00588410; iTF_00494652; iTF_00486849; iTF_00512271; iTF_00512131; iTF_00565661; iTF_00565500;
80% Identity: iTF_00494515; iTF_00588410; iTF_00494652;