Drel011832.1
Basic Information
- Insect
- Drosophila repletoides
- Gene Symbol
- Ouib
- Assembly
- GCA_018150835.1
- Location
- JAECWQ010000100.1:16645002-16647428[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 2.9e-05 0.002 18.4 2.5 1 23 444 466 444 466 0.97 2 7 5.2e-05 0.0036 17.6 0.8 1 23 472 495 472 495 0.98 3 7 0.007 0.48 10.9 1.3 1 23 501 524 501 524 0.89 4 7 1.1e-06 7.9e-05 22.8 1.7 1 23 561 583 561 583 0.96 5 7 0.00097 0.067 13.6 1.9 1 23 589 611 589 611 0.97 6 7 0.00012 0.0085 16.4 0.4 1 23 616 638 616 638 0.98 7 7 0.0012 0.082 13.4 3.0 1 22 644 665 644 668 0.91
Sequence Information
- Coding Sequence
- ATGAAGTGTGCGGTACACAACTGCACAAACAAATTCAAGTCAAAACAAAAACATTCGGAACAATTAAGTTTCTTCAGTTTTCCGAAACAGCCCGATTTATTACGGAAATGGGTAACATTTTCCCGCAAAAAAGGCAGCAAAGAGAAATTAGATTCCTACCTGAAAAATGTGATGTGCAATGAGCACTTCAAAGAGGAGGATATCCAGGGAGGATTACAATTTCAAATGGGTCTATGCTCGAAGCGTACGCTGAGGCCAGGCGCTGTGCCCTGTATTAATAATAACGATATTAGCGCCGCGGAACGGGAGCGCAGGGAAAGGCGAAGAAATAAAAAACTGGTCGCTGAGCTGTTGGAAGAAGTAGCCGCACGGGAAGCAGCAGAAGCCAGCGGAGAAATTGTGGTTGCGCCCGCCTTTGTGCGGAATACTGGAATTGTTTCTGTTCCCGATTTTGTTAGTGCCACTGGAAATGCGTTTATTCCGTTTACGCCGACGCCAAGCGAAAGTGATCCTTTGGCCGAGGAATTGGAACAGTCCACCAGTAAGTGTCCGAGCCGAGCTGAGAGTCCTATAGATCCGTGCAGTACTGAAAGTCCTATCAATTCAATCAGAGCGGCCACTCCTAACGATCACAAAATATGTCGCACTTGTTATCGATCCTTTCTTATCGACGAAAATGCCAAAGATCTGAGCGAAGATGAAAATGCTGTAATGCTTTATCATATTGAAGTTATTACCGGAATTTGGATTCAGTGTCAGGAAGGAATATCACAATTTATGTGTTCGAGGTGCGTTGACAATTTGCGTACAGCCATTGAATTCCGGGAGGTCTGTATAAGAACCGAAGTACAGTTTACAACTGTGGACGATTTATCGCTGCCAACGATTATCAAAGAAAGCGACACAGAGCTGTGTAATATTGAGGAAATGTCTGAGGCGCAGCAGGGGCTAAATGATAGCGATCTTAAGGCGCAATTTATATCTGTATTTCCGGCTAGGGGTAAAAATGGTGAAACAACAGTAGTTGAGTCTTTAGGCCGTACGATAAGCCAACAACAAGAACAACAGAAGCCTCAAGCAAAAATTACTGTTCCCGTAGATCCAAATAGCTTGGCTTTGGGTGCACAGATCTATGAGGATCTCTTAAATGAATATCGGGGCAAGGAGAAGCCAGCACGTCCCAGACCGAAAAAGATACGAATCACAAAGACAAGAACCATAAGGCAAAGAAAGAGACAATCTCGGGAGCCCAAGCCTACACGTCCGAAACGCACCAGGGAGGAAAGAAATCGTATACGACGTGAGCAGATCAGAGCAATGCCTCTAAATCATGTATGTGATCAGTGCGGTGCCTCCTTTCGTGTCAGATGCAATCTAACGATACATATGTTACGTCATACAAGGACCAAAAACTATCAATGTACCGAATGCTCTAAGGAATTCTATGATGCCTACAGTCGGAACATTCATATTCGTGTGCGTCACAAAGGTGAATTACCCTTTGCTTGCAATTACTGCACAAAGGCGTTTAGCTCATCCAATACACGTTATCTGCACGAAAAAAATATTCATGGAGCATCTCCTCGTATACATAGGAACGTAAATAAACTGAATAAAAAAATAGACATGAGACAAAGAGAGGAGCAACAGGCGGAACAAAAGCGCAAGAAAAATATTCGACATTTTTGTAACTATTGCGACAAGAGCTATGCAACAAAATATGCCTTAAAATGGCATATTAATGTACACATAGGTGCTACACCCTTTAAATGCAAACTCTGCGATATGCGATTCACGGATCCGCAATTAAAAAAGAAACACGAAATGCAGCATGATAAACGGCCATATGAATGCGATATTTGCCTCAAGGGTTTCTATGTACGCAGCAAGCTTAAGGAACACGAGAGAATTCACACCGGTGAACGTCCCTACAGATGTGAAATTTGTAATGCTTTCTTTCGATATAAGTTCAATTTATACTCTCATCAATTTAGTAAAATGCATAAAGAAAATCTGCAAAAGTTGCAAATGATCGAAATAATCGAGGACTCTAATTGA
- Protein Sequence
- MKCAVHNCTNKFKSKQKHSEQLSFFSFPKQPDLLRKWVTFSRKKGSKEKLDSYLKNVMCNEHFKEEDIQGGLQFQMGLCSKRTLRPGAVPCINNNDISAAERERRERRRNKKLVAELLEEVAAREAAEASGEIVVAPAFVRNTGIVSVPDFVSATGNAFIPFTPTPSESDPLAEELEQSTSKCPSRAESPIDPCSTESPINSIRAATPNDHKICRTCYRSFLIDENAKDLSEDENAVMLYHIEVITGIWIQCQEGISQFMCSRCVDNLRTAIEFREVCIRTEVQFTTVDDLSLPTIIKESDTELCNIEEMSEAQQGLNDSDLKAQFISVFPARGKNGETTVVESLGRTISQQQEQQKPQAKITVPVDPNSLALGAQIYEDLLNEYRGKEKPARPRPKKIRITKTRTIRQRKRQSREPKPTRPKRTREERNRIRREQIRAMPLNHVCDQCGASFRVRCNLTIHMLRHTRTKNYQCTECSKEFYDAYSRNIHIRVRHKGELPFACNYCTKAFSSSNTRYLHEKNIHGASPRIHRNVNKLNKKIDMRQREEQQAEQKRKKNIRHFCNYCDKSYATKYALKWHINVHIGATPFKCKLCDMRFTDPQLKKKHEMQHDKRPYECDICLKGFYVRSKLKEHERIHTGERPYRCEICNAFFRYKFNLYSHQFSKMHKENLQKLQMIEIIEDSN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00587436;
- 90% Identity
- iTF_00587436;
- 80% Identity
- iTF_00587436;