Drel015806.1
Basic Information
- Insect
- Drosophila repletoides
- Gene Symbol
- L
- Assembly
- GCA_018150835.1
- Location
- JAECWQ010000089.1:12861081-12868442[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 9.4e-06 0.00065 20.0 2.9 1 23 156 178 156 178 0.98 2 17 0.32 22 5.7 6.2 1 23 184 206 184 206 0.97 3 17 1.6e-07 1.1e-05 25.6 3.2 1 23 212 234 212 234 0.99 4 17 1.1e-05 0.00079 19.7 0.4 1 23 240 262 240 262 0.99 5 17 0.021 1.5 9.4 0.2 2 23 344 368 343 368 0.90 6 17 0.002 0.14 12.7 0.2 2 23 391 413 390 413 0.95 7 17 0.025 1.7 9.2 0.7 1 23 463 485 463 485 0.97 8 17 0.0021 0.15 12.6 0.3 1 23 492 514 492 514 0.92 9 17 8e-05 0.0055 17.0 0.1 1 23 522 547 522 547 0.95 10 17 1.6 1.1e+02 3.5 1.5 2 23 583 605 582 605 0.95 11 17 0.0023 0.16 12.4 1.1 1 23 646 669 646 669 0.97 12 17 0.0015 0.1 13.0 1.8 2 23 824 846 823 846 0.96 13 17 0.11 7.3 7.2 0.1 1 23 852 874 852 874 0.92 14 17 0.23 16 6.1 0.6 2 23 882 903 881 903 0.96 15 17 0.37 25 5.5 1.2 1 23 999 1021 999 1021 0.94 16 17 0.033 2.3 8.8 0.0 1 23 1031 1053 1031 1053 0.96 17 17 0.00067 0.046 14.1 2.4 1 23 1058 1080 1058 1080 0.97
Sequence Information
- Coding Sequence
- ATGATGGCTTTAAAGATGTTGTATCGTGGTCCCAGTTCGCGTTTGGAGAATTTAATTGAGAAGATTCAAGCCACAAAGGAGATTACAAATAACGATATGTACAGTACACACACCTCCTCCAGCTATTCGCCCAGCATTTCGGATGGCACCATGACACCCAATTCCCAGCAGACTCAGCCGCAAACTGTCGCCGTAGCTGGCGAGGATCCAGCAACGGAAGCGGAAAAAGCAAATGGGGAGGAGGGACGGGAGCGGGAGAAGGAGCTACCAAAATTAAAACGACCCTCGCATCTGCATCATCATCATCATTATCATCATCAGCAGGCGCTGAAAATTGCCAACAAGTTGAGGAAAATCAATAAGGATGCCAAGCTCGCGGCTGCTGCGGCGGCCACAGGCGGAGGAGGCGCCACAAAGTTTGATAAGTTGACAGGCGAGAGCATTAAAAGCCGAGGCGATGGCTCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGACTCGGTTACTTGAAGCATCACGTCCAGAGCCACGCCGAACATTTGCCTTTCAAGTGTGAATACTGCGCCAAATTATTCAAGCACAAGCGCTCCCGGGATCGCCATAAGAAGCTCCATACCAACGAGAGGAACTACAAGTGTCCGCATTGTGAGGCTGCTTTCTCCAGAAGCGATCATCTGAAGATTCATATGAAGACACACGATATCCAGAAGCCTTTCCAGTGCAGCATGTGCAACCGAGGCTACAACACAGCCGCTGCATTGACCTCCCACATGCAGAAACATAAGAAGAATGCGGCTATACTGGCTGCCGGAGGTAATCCCAATGCTCTAAACTATAGTCCACGTTCCACTGGCTCTGCCTCGATCTCGAGCAATGGAAGTCTACAGAAGCGGCGCTATGCGCTAGCACTTGCCTCCGATAGCCCCTCCAGTCCCGGTGCAAGCCGGATGGAGTTACCCAAACGTGCGAGGGTTCAGCAAGTCGCAACCACGCCCACTGCGACTCCAACCCCGACGCCGTTACTTCGTTGCAGCTACTGCCCCAAGGTGACGGAGTTTAGCAGCTTGGAACAGCTCAATGCACATCTGCAGCAGGCACATGAGCAGCGCGATGGAGAGCGGGAACGGGAGGAGGAGCCCTCATTACATGGCAATGGTTTCCAGCTGAGCTGCGAGTACTGCACCATGAGATTTGGAAATATAGCAGCACTTTTCCAGCACATGAGAGCAACACACTTGGATCGTTTGAGTAGTCCCAATTCCTATTATGGACTGGCCAGTCCACGTCTCACGATGGAGATGCCCAAGATCAAACCGGAACAGCAGGAATTGCCCACAGACTTGAGCAGTCACAGGCGGCGCACACAGACACCACCGGGCGTCTTCTTCTGCAATCAATGCAATGCTGGTCTACCGGACTTCGAGAGCTTTCGCAATCATCTCAAGACGCATCTGGCCGAGGGAATGCAGCACAGTTGTCCACACTGTGGCCTGAATCTGCCCGAGCAAAGCGAGCTGGAACGTCATGTGGTGGCTCACTTCTTGCTGAGCAGCTCCGAGTATAATTGTGGCGCCTCAAACTGTGGCAAGTCCTATGCCAAGGCGGATGAGCTGCAGCAGCATTTGCAAACGGAGCATGTCCAAAGCCTGCTCAAATGCAGCCTCTGCTCGGAGCTGTGCGAGACACGAATGTCCATGCAACTCCATCTGGCCTGTGCGCACAGCCAGGAGACCCAGTTGTTGCGCTGCAGCGCCTGCTTGGAGCTGTTCCGCAATGAGCAGGACTTTCATGTGCATGTCAAGACCCGACATCAGCTGGGCCAGCAATTGCTGGCAGCTCCACCCTCGAATCCCTTGCAGTGCATGTTCTGCCGCGTTGTGTGCGCCTCGGAGCTGGAAATGCATTTCCATTTGGCGGCACATGCCAGACAATTTCGCTGCCCCAGCTGCCCGGAAACCTTTCATGTGGAATTCCTACTGGACAGGCACATGCAGAGCCAGCATGGCGGCGAAAAGAATTCCAAGGATAATTCCAACTCCGCCGCCATGGGCAGCTTGTATGTGAATGCTCTGCTGCCACCGCTGGCTGCGGCTGCCGCGGCCGCTGCTGCTGCCAGCAACAACAACAATAACAACATAGACTATAACGTAGCATTCAAAGGACTCTTTGCCACCCACAGTCCGCTGCAGGTTGACACCAAATCTGCGCCTCATCCGGCTCTCATGTATGGACTCAGTCAGCGTTATCTAATGGAAATGTATGCAGCCAAGGCTAGTTCCAGTTCGCCGCCAGACGTGGCGCCTGCTGCACCGCCTCCACCACCACCGCCACCGCCTCCCGCGCCAACTGCCGTCACCACGGGCAACTACAGCTGCGGCATGTGCGAGCGTCAGGATCTTCGGAGCGAAGCAGAGTTGCATTCACATCGCAAGCTCGCTCATAATCTCAAAACTGGTGTCAGTCTGAGATGCGCCTATTGCTCCGGGAACTTTAAATCTCGCGCAGAGCTGGAGCAGCACATGAAGAGCTGCCACAATTCAAGTGGCAAGCACAAATGTTTGATTTGTGATGAGATCTTTCCCTCACCCGCCATACTGGCGGAGCACAAGCTACAACACTCCAAGGTGGGTCAATCAGGCAAATGTGCCCACTGTGGCCAGCAGCTGGAGCATGTGGCCGCCTTTCGTGCTCATCTCAGTGAGCATGGCAGCGATGGAAACTTGCCTCTGGCCTGCATTTGTTGCCGCCAAACATTGCACTCGGAATTCGAGCTGAGTTTACATGCGAAATTCCATACAAAATCACCGAGTAGCCTGCAGGAGCCGGTCTGCGCCTTGTGCTTGGAGCCCCTGCCAGGAGCTGGAGAAACCGCGAAGCTGTGCGAGAAATGTTGCCGCAAACATAACCTAAATGGTAAACGCGGCGAGAAACTAGTGGCGCCACCTTCAGCACCACAGCCGCCCACTGCTGCTCCCACATCTTTTTTGGAGCATCGGTGCAATCTCTGCAAGCTCATTTTGCCGCATGCCCAGAAACTGCAGGAACATCTGGTGGAGCACACCTTTGCGGGCACCGAGCAGCGCGGCTTTAACTGCTATATTTGCTCGGCGGTCTTTACTGCGCCCGCTGGTCTACTCTCACACATTGCGGAGCATGGAGCTCGTCCATATGACTGCAATTTGTGTTCCGAGAAGTTCTATTTTCGCGCTCAATTGGAGCATCATCAGCGCGCCCATGAGCTAAGACCGGTTCCAGTTCCACCTGCTGCAATTCCACGTCCTGCCAAGGTGGAGTGCAGCTCACCCATTTCACTGAGTCCCAGTCATGTCAAGCAGGAGCAGCTCTTCGAATCGGAGTCGGCTTCGGCATCTTCCCCAAGCCACAACCAGCCGCCGCCACAGCAGCAGCCACAGCAGGAGGAGGAGGAATACATCGAAGTGGAGCAAGTGCCACAGGAAACCCGCTCCGGGGAGCTTCTAAGTGGTTCACACAACAACACGGAACGTTCCAGCAGCAGCGCCTAA
- Protein Sequence
- MMALKMLYRGPSSRLENLIEKIQATKEITNNDMYSTHTSSSYSPSISDGTMTPNSQQTQPQTVAVAGEDPATEAEKANGEEGREREKELPKLKRPSHLHHHHHYHHQQALKIANKLRKINKDAKLAAAAAATGGGGATKFDKLTGESIKSRGDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASISSNGSLQKRRYALALASDSPSSPGASRMELPKRARVQQVATTPTATPTPTPLLRCSYCPKVTEFSSLEQLNAHLQQAHEQRDGEREREEEPSLHGNGFQLSCEYCTMRFGNIAALFQHMRATHLDRLSSPNSYYGLASPRLTMEMPKIKPEQQELPTDLSSHRRRTQTPPGVFFCNQCNAGLPDFESFRNHLKTHLAEGMQHSCPHCGLNLPEQSELERHVVAHFLLSSSEYNCGASNCGKSYAKADELQQHLQTEHVQSLLKCSLCSELCETRMSMQLHLACAHSQETQLLRCSACLELFRNEQDFHVHVKTRHQLGQQLLAAPPSNPLQCMFCRVVCASELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGEKNSKDNSNSAAMGSLYVNALLPPLAAAAAAAAAASNNNNNNIDYNVAFKGLFATHSPLQVDTKSAPHPALMYGLSQRYLMEMYAAKASSSSPPDVAPAAPPPPPPPPPPAPTAVTTGNYSCGMCERQDLRSEAELHSHRKLAHNLKTGVSLRCAYCSGNFKSRAELEQHMKSCHNSSGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCAHCGQQLEHVAAFRAHLSEHGSDGNLPLACICCRQTLHSEFELSLHAKFHTKSPSSLQEPVCALCLEPLPGAGETAKLCEKCCRKHNLNGKRGEKLVAPPSAPQPPTAAPTSFLEHRCNLCKLILPHAQKLQEHLVEHTFAGTEQRGFNCYICSAVFTAPAGLLSHIAEHGARPYDCNLCSEKFYFRAQLEHHQRAHELRPVPVPPAAIPRPAKVECSSPISLSPSHVKQEQLFESESASASSPSHNQPPPQQQPQQEEEEYIEVEQVPQETRSGELLSGSHNNTERSSSSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -