Drel009211.1
Basic Information
- Insect
- Drosophila repletoides
- Gene Symbol
- ken1
- Assembly
- GCA_018150835.1
- Location
- JAECWQ010000031.1:17647921-17650011[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0025 0.17 12.4 6.1 2 23 182 203 181 203 0.97 2 12 0.00095 0.066 13.7 0.1 1 23 209 234 209 234 0.92 3 12 0.03 2.1 8.9 0.1 3 23 243 266 241 266 0.93 4 12 0.0028 0.19 12.2 0.7 2 23 279 300 278 300 0.97 5 12 9.4e-06 0.00065 20.0 0.6 1 23 307 329 307 329 0.98 6 12 0.0089 0.61 10.6 0.1 1 23 335 357 335 357 0.97 7 12 0.035 2.4 8.7 2.6 1 23 363 386 363 386 0.98 8 12 0.0071 0.49 10.9 3.9 1 23 392 414 392 414 0.96 9 12 0.00017 0.012 16.0 2.0 2 23 421 442 420 442 0.96 10 12 2.6e-05 0.0018 18.6 2.2 1 23 528 551 528 551 0.95 11 12 0.0013 0.093 13.2 0.8 1 19 557 575 557 579 0.94 12 12 0.00017 0.012 16.0 4.3 1 23 585 607 585 607 0.97
Sequence Information
- Coding Sequence
- ATGACCACGGACAGAACGTATTCGGTGCATACAATATGCCGAGTTTGTTTGGACTATGTGGATAACGGTGGGGCATACGATTTGTTTATAATGCCAGATTTGGCCAAAGCATTTACAGTGTGCACATCGCTAGTGGTGGATGCTCAGGATGGTTACCCTAGGCAACTGTGCGCCGGCTGTTATGGACGATTAAAGGATCTGAAAGATTTCCAGCAGCTCTGCTTGAGCTCTCTAGAACGCTTCAAGCAATTCATGAAGTCTAGTGTCCTGGTGGATCTCCAGGAGCCGGAGCTGCCGCAGGAGGAGGCAGAGCACCAGCAGGAGCAGGCGGAGCAAGCTACCTTGGATTATGATCCTTTGTTGAGCCATAAAATGGAACTGATTGGCAACGAGGAGGAGGTTTTTAAGCTGCTGGAGCATGTGGATAAGCACCAGGAGAGCTCCTCTTCCTCGGAGGATGATGTACCGCTGGCACAACGTTTGCTGGAATCTGGCCCTAAACGTAAAAAGATCCCCTTAGCAGAGCGTTATTTGCGAAATTTAAGATGTCACATTTGCCAGCAAAAGTTCAGGAAGCAGCTGAACTATGAGGAACACATGAAACATCACAATGGTCTGCTGCCCTTTCAGTGTCAGGTGGAAAATTGTAAGAAAGGCTTTACTACTGCGGCTGCACTGCGTCTGCATGTGGATTATGCGCATACAAAGCGCGACGAGCAAATACCCTGTACTGTCGAGGGGTGTTCGCTGCTGTTTCCACGCTCGCGATTGCTTACAATTCATTTAAAGAAGGTGCACAATATGACCAGGACCAATGGACAGCGCGTGGAGCAGCCTTGCAGCGAGTGTGGCCTGCTCTTTCGTTGTCCTGCAGCACTAAAGAAGCACATGTATACGCATACAGGGGAACAGTTGCCTTATCCTTGCAACATCTGTGGCAAGGGCTTTCATATAAATAGCGCGCTTAAGAATCATCTGCTGCGCCATGCGGGCATCAAGAATTATGTGTGTCCGTATTGTGGTGTGGGCAAAACCACCAGGCAGGAGTGGAACAAGCATTTACTAATCCACACCCAGGAGAACATGTTCAAGTGCTCGAGCTGTGACCATGCCACGCACACCAAGCGTGCTTTGGATAATCATGTGAGAATTGTTCATGAGAAGATTAAGGATTATGCCTGTCAATACTGTGGAAAGACTTTTGGCAAGTCGCATGCCTGCAAGATTCATGAAATGACACACACCGGGGAGAAGCGTTGCGAATGCAAGGTCTGCGGCAAGAAGTTTCTCTACGCTGAGAGCCTGACGAAGCATCTGAAGATTCATGAGAAGTGCGTAGAGCAGGCCATTGAAACGTATCGACAGCGGCAGGTGGAGCTTGGCGAGGCTCCTACTGGCGAGGCTCCTTCTGGCGAGCCTGCAGCTGCCGACGAACTGCTCAAGGTCTGCGCGGAATCTGTTGCCACAATACCCAAAGATCCCCGACGAGTAGAACGTGTAGACATCTCGCAGCTAGCAGGCACTGTTCTCAATCCCATACCTACCGAGCCGGTACCCCCCAAGCCTCCAAAGGATGGGTTACACTTTTGTCCTGGCTGCAATCAGAGCTTCAATAATCTAGGCAACATGAAGCGTCATTATAAGAGCGTCCATGAGAAGGTCAAAGATTTCGCCTGTCGCTACTGTACGCGTCGCTTTGCCAATTCCCAATCCCTGAAGCAGCACGAATGGATTCATACGGGAGAAAAACCACATAGCTGCCGAATTTGTGGCACTCATTTCCGTCAGGAAGCCGCTTTGATACGCCACCATAAGGTGCACGAGGTGAAGCCACCAAAACCCGTCAAGCCGCCTAAACAAATTACAGAAAAATGTCGACAGAAGGAGATTCTGAAATGTGAGAAACGTCGCAAGGTGGAAGCCTTAAAGCAGCAAATAGCCGAAGCAGCTAAGGAGGAGCTCCAAGAGCTAGCACATAAGCGTGTCCTGAAAAAACAACAAAATACCTATAAACAGTATCAAGCGGCAGCTGCAGCGGCTGCCGAAGTGAGCACCGATGAGGAATCCGAGATTCGTCTTCTAGCTCTCTGA
- Protein Sequence
- MTTDRTYSVHTICRVCLDYVDNGGAYDLFIMPDLAKAFTVCTSLVVDAQDGYPRQLCAGCYGRLKDLKDFQQLCLSSLERFKQFMKSSVLVDLQEPELPQEEAEHQQEQAEQATLDYDPLLSHKMELIGNEEEVFKLLEHVDKHQESSSSSEDDVPLAQRLLESGPKRKKIPLAERYLRNLRCHICQQKFRKQLNYEEHMKHHNGLLPFQCQVENCKKGFTTAAALRLHVDYAHTKRDEQIPCTVEGCSLLFPRSRLLTIHLKKVHNMTRTNGQRVEQPCSECGLLFRCPAALKKHMYTHTGEQLPYPCNICGKGFHINSALKNHLLRHAGIKNYVCPYCGVGKTTRQEWNKHLLIHTQENMFKCSSCDHATHTKRALDNHVRIVHEKIKDYACQYCGKTFGKSHACKIHEMTHTGEKRCECKVCGKKFLYAESLTKHLKIHEKCVEQAIETYRQRQVELGEAPTGEAPSGEPAAADELLKVCAESVATIPKDPRRVERVDISQLAGTVLNPIPTEPVPPKPPKDGLHFCPGCNQSFNNLGNMKRHYKSVHEKVKDFACRYCTRRFANSQSLKQHEWIHTGEKPHSCRICGTHFRQEAALIRHHKVHEVKPPKPVKPPKQITEKCRQKEILKCEKRRKVEALKQQIAEAAKEELQELAHKRVLKKQQNTYKQYQAAAAAAAEVSTDEESEIRLLAL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -