Drel005697.1
Basic Information
- Insect
- Drosophila repletoides
- Gene Symbol
- -
- Assembly
- GCA_018150835.1
- Location
- JAECWQ010000221.1:9859179-9861715[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 9.5e-07 6.5e-05 23.1 2.5 1 23 88 110 88 110 0.99 2 15 0.00034 0.023 15.1 3.0 1 23 116 138 116 138 0.96 3 15 0.0073 0.51 10.9 2.7 1 23 144 166 144 166 0.98 4 15 2.2e-06 0.00015 21.9 0.1 2 23 189 210 188 210 0.97 5 15 7.7e-06 0.00053 20.2 3.2 1 23 216 238 216 238 0.98 6 15 0.0028 0.19 12.2 3.7 1 23 244 267 244 267 0.96 7 15 5.9 4.1e+02 1.7 3.2 1 20 371 390 371 391 0.91 8 15 3.1e-07 2.2e-05 24.6 1.6 1 23 404 426 404 426 0.99 9 15 2.2e-07 1.5e-05 25.1 1.2 1 23 432 454 432 454 0.98 10 15 8.5e-07 5.9e-05 23.2 3.1 1 23 460 482 460 482 0.99 11 15 3.1e-07 2.2e-05 24.6 0.9 1 23 492 514 492 514 0.98 12 15 9.1e-05 0.0063 16.9 2.4 1 23 520 542 520 542 0.97 13 15 4.1e-07 2.8e-05 24.3 6.2 1 23 548 570 548 570 0.99 14 15 2.1e-05 0.0015 18.9 3.2 2 23 577 598 576 598 0.97 15 15 3.7e-07 2.6e-05 24.4 4.9 1 23 602 624 602 624 0.98
Sequence Information
- Coding Sequence
- ATGAGCGCAATAATAGACGTGAGTTGCGTTAAAGTAGAGCCGGAGCCTGACCCGGAGACGGAGTTGGATCTGGAGGCTTTCGAAAGAGAAAGAAACTTCAAGGTTGAATCTGATATTTCCGAGCTGGATATAGGACCTATAAAGATTGAACCGGGTATAACAGAGCTTCCTGCCCAAGTTGAGGCTGGAAATATAGTGAAGCAGCAGGGAATGCAGATGGGAGCTCTTCCAATAAAAACTGTTGTCAATGCCGAAGGACGTTATCAATGCTCCCACTGCCCGCGTCATTTCGAGCAAAGCGATGAACTAAATATACATATGCAGATTCATAGTAATAATCTGCTGTACAAGTGTCCCTATTGCCCCAACAGTTTCTCGCATAAATCGATTTTCACGACACATATGTACGGACATACTGGCAAATTTCCCTACCAGTGCAGCAAATGTGAATTAGGCTTTCTCAAACATAGCGAACTCAAGAAGCATTTACTCAATCATAGCAGTAAACTGTCAAAAGAATGCACAATTTGCAAAGGATACTGCATACATAAAAACTATGTCCTTCAATGTCCAGAGTGCTCTCGGGGATTTACGAGCAGCTATGACCTGCAAATACATCTACAGATTCATAGTGATAAATTGCCATATAAATGTCCTCTCTGCCCAAGTAGTTTCGCCCACAAATCAAATTATACGGCTCACATGTGCGAGCATACTGGGGCATATCCTCATAAGTGTGGACAGTGCTCTCATGGCTATATGAGAAAATACGATCTACTGAAACATATTCGATGGTCGCATACGATAACTAGCAAGCGTCCGGGTAAGTCTTCTGTCGCGAAAGTCGATAAGGAACAGGAAACCATGGAGTCCAGTTCTATGAATAAGGATCCGGATAAGGAGCAGGCTGTAAGTGAATCCCTTATAACACAACCAGCTGAGGATTGCGTGAAAGACATAGATGTCGCCTGCCTTAAAGTATACCAGGAAAATAAGGAGACGCTTGAAACTGTTGCTTTAGATAAGATGGAAACTAACAGTGTAGACGTGGATTTTATTAAAAAGGAACCAGGGGAGCAGACCGAGACAACGTTGCAGCCAGAGCATTCGCATAAGTGTAAGATCTGTTGCAAGGAATTCATGGACATAAATGAACTGCACTTGCATGAGAAGTGCTACACACATAAAAGACACACCGTGGATCGACCGTATAAATGTGAACACTGCTTAAAGAGTTTTAGCCAGGCAAACGGTCTGAGAGTGCATATGCGAGTTCATTCAGGAGAGCGTCCCTATCGATGTCCGCACTGTCCACGAACTTTTATACAGAACTCCGGGCTGAAGGTACACGTACGACAGCATTCTGGCGAAAGGCCGTTTAAGTGTCCCCATTGTCCGCGTACCTTTGCCAATACTTCGAATCGAAAGAAACATATGCAAGTACATAGCTCGGAAATTGCTAGCAATCAACCTTACAAGTGTCCAGAATGTCCCAAAACCTTTGCCCAATATTCACATTTTATTGTACATGTTCGAGGACATACAGGCGAACGGCCCTTTCAATGCATACAGTGCCCGAAGGGCTTTAAAGTAAGTCACGATCTAAAGAAACACCTTCGTAGTCATACGGGTGAACGTCCCTATCAATGCGCCCATTGTTCTAAAACCTTTACACAGAATTCCCATTATAATGCCCATATGCGTTCGCATTCCGGAGAGCGACCTCTAAAGTGTCCCCACTGCACACGCACCTTTTTCAAGAGTTACAATCTCAAGGTTCATCTCGGCACCCATACAGGTCCCTATAAATGTTCCCAGTGTCCAAAAACCTTTACCCAATACTCTAATTTTAAAACTCATATGCGTTTTCATCAAAATTATAAAAATTAA
- Protein Sequence
- MSAIIDVSCVKVEPEPDPETELDLEAFERERNFKVESDISELDIGPIKIEPGITELPAQVEAGNIVKQQGMQMGALPIKTVVNAEGRYQCSHCPRHFEQSDELNIHMQIHSNNLLYKCPYCPNSFSHKSIFTTHMYGHTGKFPYQCSKCELGFLKHSELKKHLLNHSSKLSKECTICKGYCIHKNYVLQCPECSRGFTSSYDLQIHLQIHSDKLPYKCPLCPSSFAHKSNYTAHMCEHTGAYPHKCGQCSHGYMRKYDLLKHIRWSHTITSKRPGKSSVAKVDKEQETMESSSMNKDPDKEQAVSESLITQPAEDCVKDIDVACLKVYQENKETLETVALDKMETNSVDVDFIKKEPGEQTETTLQPEHSHKCKICCKEFMDINELHLHEKCYTHKRHTVDRPYKCEHCLKSFSQANGLRVHMRVHSGERPYRCPHCPRTFIQNSGLKVHVRQHSGERPFKCPHCPRTFANTSNRKKHMQVHSSEIASNQPYKCPECPKTFAQYSHFIVHVRGHTGERPFQCIQCPKGFKVSHDLKKHLRSHTGERPYQCAHCSKTFTQNSHYNAHMRSHSGERPLKCPHCTRTFFKSYNLKVHLGTHTGPYKCSQCPKTFTQYSNFKTHMRFHQNYKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -