Drep001074.1
Basic Information
- Insect
- Drosophila repleta
- Gene Symbol
- -
- Assembly
- GCA_018903745.1
- Location
- JAEIGN010000727.1:5071093-5077066[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.032 2.1 8.8 0.2 1 23 846 869 846 869 0.94 2 13 5.2 3.3e+02 1.8 0.2 1 23 1035 1057 1035 1057 0.91 3 13 0.00012 0.0075 16.5 2.7 2 23 1060 1081 1060 1081 0.97 4 13 2.5e-05 0.0016 18.6 0.2 3 23 1089 1109 1087 1109 0.98 5 13 3.7e-07 2.4e-05 24.3 4.1 2 23 1116 1137 1115 1137 0.97 6 13 3.3 2.1e+02 2.4 0.4 5 23 1150 1168 1147 1168 0.95 7 13 0.88 56 4.3 5.4 3 23 1175 1196 1173 1196 0.93 8 13 0.093 6 7.3 0.2 2 23 1207 1227 1206 1227 0.96 9 13 3.6e-05 0.0023 18.1 0.4 1 19 1233 1251 1233 1255 0.95 10 13 1e-05 0.00066 19.8 0.5 1 23 1263 1285 1263 1285 0.98 11 13 6.7e-05 0.0043 17.2 7.6 1 23 1291 1313 1291 1314 0.96 12 13 0.00013 0.0084 16.3 5.9 1 23 1319 1341 1319 1341 0.98 13 13 0.018 1.2 9.5 8.2 1 23 1347 1369 1347 1370 0.95
Sequence Information
- Coding Sequence
- ATGGTGGACAGTGTGCAGTGCCCCGTGTGCACCTTGTATCTGCACGCGGGCATGAATCTCTCCGACCATTTGGAGACGCATCCCAAGGAGCAGGTCATCAAGGCGCTGGTCCAAATGACCATTGTGAGCAACAATGGCATGGGCAGCGCCCTGGCAGCAGCTTTGCTCTCAAGTGATGCCGCCGCTAGCTCCACCTCATTTGCGTCAGTGCTGCGTTACGCCGAATCGCCAGTGGCTCACTACTTGGAGCGGGAGAACGGGGACTTCATCGTACAGGAAACCCCCAAGCACATTGTCGAATGCGTTGAGAAGGAAGACGGCGAGTTTTCAGTGATTGAACGCATCTATCAGTCGCCACCCAGCGTACTCCACATACACGACGATGATGAAGACGACGAAGAGGAGGACGAGGACGAGGACGACAAGGGATGGGCTAACAGTGATGCAGAGGATCATATGAAGCTGGAAGATCATGTCGAGGATGGCGACGATGAGCATGAGGATAGCCGCAGCAGAGCTTCACACAAAGCTACAACGAAAAAGTCACGCAAGGCAAAAGGAAGCGGAAGAAAGCACAAACGCATCAACAAGCATCAGCCGGATGATGAGGATGACTTTATGAGCATAGGTAGCAGTTGTGCCGAAAGCGACCAGTTGGAGCAGCCACATCAGACGCAGCAATCACATGTGCCACAGGCTGCGTCGCCCGCGCCAGGTCAACTTTCCACGGCACCTTCGACGAGCAGTGGAGCTGCTGCTGCCGCCGCCGCCTCCTGCAGTACCAACTCGAACAAGTCCAAGAAGAATCGCGTTACAGTACTCAGCGATGTTCCGCTCAACATGAACGAGTATCTGGATCTGGTGGGCAACATTGTCGCGTCTAGTCGCATTGGCGCTAATCGTCCGTTTGCTGCTGTGGCGACCATTCCGCTGGTCAAGGTCGAGAAGGAGGAGCCAATGGATGAGTACGATACCGTAAGAGATGAGATGCAGGAAATGGAGCAAAAGCACAGCTTGGAGAATGCCAGTGGCAGCAGCAACAGTGGCCATGGCACCACCAGTGTCATACGCATGGCCAGCACTAGCAGCACCACCACCGCCACCGCAAATGTTGCCAACGACGATCTCACACAGCCGCCGCCCATGAAAGTGGAGGTGGAGCCAACGGTGCTGCTGCCGCAACGCTTCTCAGCGCCAGCGCAGCATCGTGGGCCCAAGAAGTTAGTCATCAAACCAAAGGCCACCGCGACAGCGTCAGCAACATCGACATCGACATCGGCCACGACTAAAAAGACTGATAACAACGCTGCCAGCAGCAGCAGCAGCAGCAACTGCGCCGAGACACTCAGCATATCATCGAAGACATCCACAGAAACGCTGCAGATCAAGAGCGAGAATGTGGAGAATGTGTCCTCCAGTGGCAGCATACTGGAGAAGCATCTAACCAATAACTATGCCGCGCAGCAGGCACGCAAGCACTCTGCAGTGAACGACGACGATGCACGCGTGCTGCTGGAGTTCGCCAACTCAAAGCAGCAGCCGCCGGCGGGCAACAGCAATCAGACTACCTTTGTGGTGAACGCGGCCAGTTTTGCGTCGGCGGGGTCCGTATTTGCGAGTGGCAGCAGCAGCGTTCAGAAGTCAGCCAAGCCGGGCGATGAGTACATTCTGCCAGATAATAATCTAGAGGTGGACGAAATTGTGATATCCTCCTCCAACTCGTCAGTCTTGGATCAGGATTGCTCCATGAATGCGACGTTTCGAGTGGGCAAACAGCAGTCAACAATGGGTCCCTGGTATCAGCCACAGCCGCAGCAGCAGCCACAGGCCAGCACGTCACACGGCTCCAATGTGGAGCAAACGAGCAATTTTATCGCCGCACTCGCTGCTGTTGAGTGCTGCAGCGTTGCGGCCGTGGATAGTGATGTGAGCGAGGCCAAGTACTTGGATCTGGACACCTGCAAGCGGGAAACTTTGAGCAATAGCAGCAGCCATTTGCCCTCGGCCTCTGCATCCACCACATCCTCGTCATTTGCGGCCGCTGCCACGGAGAGCAGCCTGGTGGGTGGCTTGGGTCTGAACATACGCACCGATGAGAAAATGCCCGCCAAGGGTGAGATTTCCGAGCAGGAAAGCAACTGTGACATTGAGAACTCCTGGAGTCAATCGATGTACGGCGACCTGTCACAGCGTTACTTTAGGAATCAGTTCACGGACGGGTACAATCAGCAGCTGGCCGATTGGCGCCAGGATTACTATCCGGCGCAGGATCTCAGTGGCCAGCAGCAGCCAGAGCGTGAGCAAAAGCGCTTTGATTTCAATGCGGTCGCTGCGGAGTACGCGCATCCGGGCCAGTTGGATGCCTCGCCCAGTTCGACTAGAAGCAATAATTTGTTGGATGCACAGCCCACTACTTCCTCGTCGTCGTCGGCTTTGTTGGCTGGTCCACCAATAGCCTCGACATCACGTGCTGCCGCCGAAGCGGAGGCCGTGGCCGCAGCTCTGGCGCAGCGGAAGCCACCGCGTCGCAAGATCTACAAGTGTCCGCACTGTGTGGCCATCTTTGAGAAGTTGAAGGAGCGCAATGCGCACATGATTGGCGAGCACAACTATGTGCGTCAGAACCGACGTCTCATCTGCACCCAGGCATTGGGCAATGGCGCATTAGCTGACCCACAGGAGCAGCAGGCGCTGGGACAACAGCAGCAGCAACAGCATCAATTGCTGCAGGGAGTGGGGCAAAGCAATGGTGACATTATGCACGAGGATTCCAAGGATGGCATTATAAAGATTAAGCAGGAACACTGCCACGATAAGCAGGATGCCTCTGAGCAACTACTTGGTCATTCAGAGTTGCCCGATGTGAAGGACTCCGGCCTGCTCAATGGCGGCGATGAGAACGGTCGCGATGCGGACATGAAGCCACCAGCCGGCGTCGCAGACTTGGACGAGAAGCCGACAATACCGCCGCTGGCCATGACCACTCCAGCTGCCAAACTTGCTGCCCTGTATCGCATGCTCATTGCCTACAATGAGTCCAAGCTGGGGCAGGAGCGGAACAATCTCAGCGAGCTTGAGCAGAAGGCTATGGAGAAATCCATATTTCTGTGCTACGTGTGTCGCACCGATTTCCCCTCCGTGAAGCTGTACGATGCACATTTGACTGAGCACCCCGCCGAGTGTTTCACCTGTGGCAAGAAATTCTATCGCTGGAAGAACTTTTCGCTGCATCTGAAACGTCATTTGGGCTGGAAGGAGTTCGGCTGTTATATCTGCGACAAGAAGTTCGTGGTGCGCAGCGCCCTTGTGGAGCACATGCGCATGCACACGGGCCAGACACCGCTCAAGTGTAAGATATGCGGCAAAAAGTTCAAGCGATATTCAAACTTGACGCAACATCGAAAGCGCCACACCAAAATCTTGGTGCGTAAGAAGGAGTACGTGTGCCATTGTGGCGAGGTGTTGCCGTCGAAGGCACGCTTCTTGTGGCACAAGGAAACACACGACTTGAAGCCCAAGTGCTGTCCCTATTGCTGCGATCGTTTTGTGCACGCCAATTCGCTGCGGCGGCACATTCGACTAGCACATTCGGATAAGTTCGACTATGCTGAGCCCATGGAGTGCCCCATGTGCAAGCAGATCTTTGCCAAGACCTCAATCAAGGCGCATATGGCCACGCATTCGACAGATCCGCAATACGATTGCGCCATTTGCAACAAGAGCTTCTCCACCAAATGGAATCTCAAGATACATTCGTGGGTGCATGCAAACCGCACCGCCAAACCGTTCAAGTGCGAGTACTGCCCCAAGGCCTTTGTACGCGAGCTGGACTTCAAGAATCACATGAATGCGCACAAGCAGATCAAGCCATACACGTGCGAGTACTGCGGCTGCAAGTTCATACGCAAATACAACTATATGCGGCATCGGAGGGAGCACCACGGCAACAAGAAGTTCACCTGCGACCAGTGCGACAAGTCTTTCCATCGTCATTATTATCTGATTGAGCATCGGCGCATCCACACGGGCGAGCGTCCGTTCCACTGCACCATCTGCGGCAAGAGCTCGACGACAAAGACCAATCATAATAAGCATCTGAAGATACATCATTCGCGGGATCCATTCACCGTGGAGGTTTAA
- Protein Sequence
- MVDSVQCPVCTLYLHAGMNLSDHLETHPKEQVIKALVQMTIVSNNGMGSALAAALLSSDAAASSTSFASVLRYAESPVAHYLERENGDFIVQETPKHIVECVEKEDGEFSVIERIYQSPPSVLHIHDDDEDDEEEDEDEDDKGWANSDAEDHMKLEDHVEDGDDEHEDSRSRASHKATTKKSRKAKGSGRKHKRINKHQPDDEDDFMSIGSSCAESDQLEQPHQTQQSHVPQAASPAPGQLSTAPSTSSGAAAAAAASCSTNSNKSKKNRVTVLSDVPLNMNEYLDLVGNIVASSRIGANRPFAAVATIPLVKVEKEEPMDEYDTVRDEMQEMEQKHSLENASGSSNSGHGTTSVIRMASTSSTTTATANVANDDLTQPPPMKVEVEPTVLLPQRFSAPAQHRGPKKLVIKPKATATASATSTSTSATTKKTDNNAASSSSSSNCAETLSISSKTSTETLQIKSENVENVSSSGSILEKHLTNNYAAQQARKHSAVNDDDARVLLEFANSKQQPPAGNSNQTTFVVNAASFASAGSVFASGSSSVQKSAKPGDEYILPDNNLEVDEIVISSSNSSVLDQDCSMNATFRVGKQQSTMGPWYQPQPQQQPQASTSHGSNVEQTSNFIAALAAVECCSVAAVDSDVSEAKYLDLDTCKRETLSNSSSHLPSASASTTSSSFAAAATESSLVGGLGLNIRTDEKMPAKGEISEQESNCDIENSWSQSMYGDLSQRYFRNQFTDGYNQQLADWRQDYYPAQDLSGQQQPEREQKRFDFNAVAAEYAHPGQLDASPSSTRSNNLLDAQPTTSSSSSALLAGPPIASTSRAAAEAEAVAAALAQRKPPRRKIYKCPHCVAIFEKLKERNAHMIGEHNYVRQNRRLICTQALGNGALADPQEQQALGQQQQQQHQLLQGVGQSNGDIMHEDSKDGIIKIKQEHCHDKQDASEQLLGHSELPDVKDSGLLNGGDENGRDADMKPPAGVADLDEKPTIPPLAMTTPAAKLAALYRMLIAYNESKLGQERNNLSELEQKAMEKSIFLCYVCRTDFPSVKLYDAHLTEHPAECFTCGKKFYRWKNFSLHLKRHLGWKEFGCYICDKKFVVRSALVEHMRMHTGQTPLKCKICGKKFKRYSNLTQHRKRHTKILVRKKEYVCHCGEVLPSKARFLWHKETHDLKPKCCPYCCDRFVHANSLRRHIRLAHSDKFDYAEPMECPMCKQIFAKTSIKAHMATHSTDPQYDCAICNKSFSTKWNLKIHSWVHANRTAKPFKCEYCPKAFVRELDFKNHMNAHKQIKPYTCEYCGCKFIRKYNYMRHRREHHGNKKFTCDQCDKSFHRHYYLIEHRRIHTGERPFHCTICGKSSTTKTNHNKHLKIHHSRDPFTVEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -