Basic Information

Insect: Drosophila rellima
Gene Symbol: -
Assembly: GCA_035043635.1
Location: JAWNMV010000236.1:4551251-4553204[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.094 6.5 7.5 0.0 2 23 252 274 251 274 0.96

2 10 2.6 1.8e+02 2.9 0.2 6 23 283 300 283 300 0.95

3 10 0.0019 0.13 12.8 6.2 1 23 306 328 306 328 0.99

4 10 2.8 1.9e+02 2.8 6.0 1 23 337 359 337 359 0.91

5 10 0.00044 0.031 14.8 0.5 3 23 369 390 367 390 0.94

6 10 0.00024 0.016 15.6 0.0 3 23 398 418 397 418 0.96

7 10 0.00084 0.058 13.9 1.3 2 23 427 449 426 449 0.97

8 10 2.5 1.7e+02 3.0 1.8 2 23 458 480 457 480 0.80

9 10 2.3e-07 1.6e-05 25.1 1.2 1 23 486 508 486 508 0.98

10 10 4.9e-06 0.00034 20.9 4.1 1 23 514 537 514 537 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.094	6.5	7.5	0.0	2	23	252	274	251	274	0.96
2	10	2.6	1.8e+02	2.9	0.2	6	23	283	300	283	300	0.95
3	10	0.0019	0.13	12.8	6.2	1	23	306	328	306	328	0.99
4	10	2.8	1.9e+02	2.8	6.0	1	23	337	359	337	359	0.91
5	10	0.00044	0.031	14.8	0.5	3	23	369	390	367	390	0.94
6	10	0.00024	0.016	15.6	0.0	3	23	398	418	397	418	0.96
7	10	0.00084	0.058	13.9	1.3	2	23	427	449	426	449	0.97
8	10	2.5	1.7e+02	3.0	1.8	2	23	458	480	457	480	0.80
9	10	2.3e-07	1.6e-05	25.1	1.2	1	23	486	508	486	508	0.98
10	10	4.9e-06	0.00034	20.9	4.1	1	23	514	537	514	537	0.98

Sequence Information

Coding Sequence: ATGTGTTTTCTGTGCACACAATGTACGGATGACGCCATTGGCAATATCCAGTTTGGTTCCAGTGAAGCCGCCTTACTTGATATGAATCAAATCATTGAAAAGCACTTCTGGCTGCAGACTAAAGAAGCCAGTGGACACGTGTGTGGTGCCTGTTGGGACCAGTTGTTTGCATTTCACAACTTTTATCTGAGTGTGGAGCACGCACACAAGGTGCTGCTCGTTAACCAGATTCCAATTGGCAAAGAAGCCGAATTAAGTGGGGAGAAGGAAAGTCCAACAATCGCCGCGGAGGTGGAAGTTGTGATTAATGAAGATGTTGTCAAGCAGGAGAATGTTCTCGGCGAAAGCGTTGCGGCTGCAGTCAAGCGCAGGCGAGGACGACCTCGCAAACAATTGCCACCGGAAAATGCAACAGGTATTGACAGCAGTGAGTTCAAAGCCGTGTTGGAACAGATCAATCTCAATGAGATTAAGATTGAGTTTCCCGAGGCGGACTTGAGCATCGCCGATGTTCTGCAGGATCAGGAAGAGCAAAACATGTCGGATTATCTACAACAAAGCGGCTGTGACAGCGAtgcggatgatgatgatgatgacattaTCGCCGCCCCGATACAGAAAAGGCCACGAAAGACTAAGAAGCGTCGCTccacaatgaaaacaaaagttgtCAAAAAGGTGAAAACCGAGGGCATTCATAATATGAAGAAGTCAAGGGAATTCAATGACTACATACGCGATCACTACAAAGTACAGTGTCCTATTTGCAATGTACCCCTGGATGGCTTCTCCGAGCTGCTCTTGCATGCTCGCAAGGATCACAATCAGCGTGGCTACGCAGTGTGCTGCGGTCGCAAGTTCTGGAAACGTGGCGTGCTCGTTGATCATCTGCGTCGCCATCAGGATCCGGATCTATTTAAATGCCACATCTGTCATCGCGTTATGGGGCATCGTCGCAGTTTGGAGCTGCACATGCGTATGCATGACATCAAGCAGCGTGGACGACTGCATCAATGCGATCAGTGTTCTAAGAAATTCTACAGCACCGTCGTTTGTGAGCGCCACAAACTGACACACATTCCCAAGGAGCAGTGGCTTGTGAACTGTACCAACTGCAAGAAGACCTTCCCCACTGAGTATCTTATGCAGCAGCATGTGAAGCTGGTGCACTTGAGAAAGTTTGATAAGATTTGCGACGTTTGTGGGAAGTCAGTACGTGGCCGTGAGGCCTTGGTTCGCCACATGGAGGAGCACACTGGGGCACCGCAACAGGTTATCAAGTGTCACCTGTGTGAATCAACTTTGACCACCAAATACGGTCTGGCACGGCACATTAAAATGATGCACACCGCCGAGAATCTGCAGCCAATTCAGTGCGAATATTGCCTTAAAGTATCACCCAGCCTTCAGGCCCATCAGCATCAtatcaaatacacacacaatacagCACGTACGCATCAATGTCCAATGTGCGAAAAGGCCTTCAAGCGTCCCAATGAATTGCGCGAACACATGACGACTCATACTGGCGAGGTGTTGTATACCTGCCCGCACTGCCCAAAGACCTTCAATTCGAATGCAAATATGCATGCGCACCGCAAGAAAATGCACTTCAAGGAATGGCAGGAgtatcatcatcagcatcactCACGACGTCGCAGCTCGAACACGATCATTTCCGTGAGTGTGCGCAAGACAACGGAGAGAGCATCCGCTGGAGCAAAAGAGGCGGCTAACGAGGTGGAGGCGACAAACGATGGAGTGGAGTGTTGA
Protein Sequence: MCFLCTQCTDDAIGNIQFGSSEAALLDMNQIIEKHFWLQTKEASGHVCGACWDQLFAFHNFYLSVEHAHKVLLVNQIPIGKEAELSGEKESPTIAAEVEVVINEDVVKQENVLGESVAAAVKRRRGRPRKQLPPENATGIDSSEFKAVLEQINLNEIKIEFPEADLSIADVLQDQEEQNMSDYLQQSGCDSDADDDDDDIIAAPIQKRPRKTKKRRSTMKTKVVKKVKTEGIHNMKKSREFNDYIRDHYKVQCPICNVPLDGFSELLLHARKDHNQRGYAVCCGRKFWKRGVLVDHLRRHQDPDLFKCHICHRVMGHRRSLELHMRMHDIKQRGRLHQCDQCSKKFYSTVVCERHKLTHIPKEQWLVNCTNCKKTFPTEYLMQQHVKLVHLRKFDKICDVCGKSVRGREALVRHMEEHTGAPQQVIKCHLCESTLTTKYGLARHIKMMHTAENLQPIQCEYCLKVSPSLQAHQHHIKYTHNTARTHQCPMCEKAFKRPNELREHMTTHTGEVLYTCPHCPKTFNSNANMHAHRKKMHFKEWQEYHHQHHSRRRSSNTIISVSVRKTTERASAGAKEAANEVEATNDGVEC

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00608700;
90% Identity: iTF_00529073;
80% Identity: -