Basic Information

Insect: Drosophila rellima
Gene Symbol: salm
Assembly: GCA_035043635.1
Location: JAWNMV010000890.1:524113-534758[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 4.8e-06 0.00034 21.0 0.9 1 23 466 488 466 488 0.98

2 7 9.6e-06 0.00067 20.0 2.1 1 23 494 516 494 516 0.98

3 7 0.016 1.1 9.9 1.5 2 23 905 926 904 926 0.98

4 7 6.8e-08 4.8e-06 26.8 0.5 1 23 932 954 932 954 0.98

5 7 0.00021 0.015 15.8 2.3 1 23 964 986 964 986 0.98

6 7 0.028 1.9 9.1 2.9 2 23 1392 1413 1391 1413 0.97

7 7 2.7e-08 1.9e-06 28.1 1.3 1 23 1419 1441 1419 1441 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	4.8e-06	0.00034	21.0	0.9	1	23	466	488	466	488	0.98
2	7	9.6e-06	0.00067	20.0	2.1	1	23	494	516	494	516	0.98
3	7	0.016	1.1	9.9	1.5	2	23	905	926	904	926	0.98
4	7	6.8e-08	4.8e-06	26.8	0.5	1	23	932	954	932	954	0.98
5	7	0.00021	0.015	15.8	2.3	1	23	964	986	964	986	0.98
6	7	0.028	1.9	9.1	2.9	2	23	1392	1413	1391	1413	0.97
7	7	2.7e-08	1.9e-06	28.1	1.3	1	23	1419	1441	1419	1441	0.99

Sequence Information

Coding Sequence: ATGAAAAATCACTTGTCAAACGTTCTGTGTGCGATGCGTAGTGACTTCAAGGATAATCACCAGGAGACCATCAATAAAATGATACAATTTGGTACCGTTAAATATGGCATTGTCAAACAGCTGAAGGATCGCGCCAGAAGCGCCGACAAAGATATAGCAAGTGATCAGGAGGATAATGGCGCCTGCTCGCCACTGACAACCGCAACGGCGAGTGCAAGTGCCGGAAatagtcccagtcccagtcggAGTCCGCAGCGACAGAGCGAGGACGAAGGAGAGAGGGAAGCCGAATCAGTGTTGGATAAGGGAGTGAGTAAAGAGCAGAAAATAGATAGTGATAGTGCCGTTGAGGCACTTGAGgatcacaatcacaacaatcagaacaataacaacaaagtgaTCATGACAAAACCGCCCGTGGAACACGAACTGGAGCACAGTGGCCAGTCCAATGCATCCATGCCACATTCACCCACCGCCGCGACATCTGTGACAGAGGAGGCAGCTGCGCAGCCCACAAACTCCGACGTGGATGTCGAGATGcaggaggaggcggaggagaCGCCGCGACAGACTTCGACGACGCCGCCAGAGTCGCAAGCAGCGATTGCTGGAGCCGCTCCAGTTACCCTGGAGGCGATACAGAACATGCAGATGGCCATAGCCCAGTTTGCGGCCAAGACAATTGCAAATGGCTCGTCGGGAGCGGACAATGAGGCGGCCATGAAGCAACTGGCGTTCTTGCAACAGACGCTCTTCaatctgcagcaacagcagctctTCCAGATTCAGTTGATCCAGCAACTGCAATCACAGCTGGCCCTCAACCAGGTCAAGCCCAATGAGGAGGAGGCTGACGAGGAGCTCGAGCCGGAGGAGCGGGAGGACGGAGAGACAGACACgtacgaggaggaggagcgcATTGCCGACATGGAGTTGCGCCAGAAGGCCGAGGCACGCATGGCCGAAGCCAAGGCGCGTCAGCATCTTATCAATGCGGGAGTTCCACTTCGGGAACGCTCCCGATCCGCCTCGCCCGCAGCCGAAACGATCTCCGCGGAGACATTGAAGCGCAAGCGGGAGGAGGATGCCTGTGTGAAGCCGCCGAGCTCCAGCTTAAGGCTCAGTGGGGAGCGGGAGAGTGCACAGGATGCGCTGTCCAAGCTCAAGGCGATGGAGAACATGCCGCTGCCCTTCGGGTCCGATCTGGCCTCCAGCATTATCACCAATCACGATGATCTACCCGAGCCTAACTCCCTCGATCTGCTGCAGAAACGTGCCCAGGAGGTGCTTGACTCTGCGTCCCAGGGAATTCTCGCCAACAATATGGCCGATGACTTTGCTTTTGGCGATAAGTCCGGTGAGGGCAAGAATCGCAATGAGCCCTTCTTTAAGCACCGTTGCCGTTACTGCGGCAAGGTCTTTGGCTCCGACTCGGCGCTTCAGATCCACATCCGATCCCATACGGGAGAGCGTCCCTTCAAGTGCAATGTCTGCGGCAGTCGCTTCACGACGAAGGGCAATCTCAAGGTTCACTTCCAGCGACATGCCCAGAAGTTCCCGCATGTGCCCATGAACGCCACGCCAATTCCAGAGCACATGGACAAGTTTCATCCGCCGCTTTTAGATCAAATGTCGCCGGACAGTTCCCCAACCCATTCTCCCGCTCCAGCGTCCAGTCTACCGCCGACTTCCAGCGCGACATCCGCTCTGACCCAGGCCCAGGCGTCCATGTCGATGAGCTTTCCCTCCAGTCCCGCCTTCCCTAGCCTCCAGGGTCTCTACCGACCTCCCATGGAGCTGCTGAAGTCGCTAGGCGCCGCTGCCGGAAGCACGGCCGGTCTCCCGCATCCCTTCTTTCCTCAGATGCCTGGTCTGGGTGCGGCACTCAAGCACAGTCAGCAGCAGAGCCAGGACATGCCCACGGATCTGCGGAAGTCGTCAGGACCTAGCTCGCCGCAtgacgaggaggaggattTGACCATGGGCAGGTTACCCGTCAAAACTGAGTTGCTGGAGGAGGAAAAACCGGAAAATACGAGGCGTGAATCGACGACAGGAGAGATGGAGGCAGAGCCAGAAACGGAACCAGAGCCGGAGGCGGAGCCTTTGCCGCTTGAGGTTCGTATCAAAGAGGAGCGCATCGATGAGGAACAGGAGCATCAGCAGACGGCGCAAATCAAAAGCGACCGACACAGTCCGTCGCCCTCAACTGTGCCGCAATCGCCGCCGCTGAACCCCCGCCATCTTCATGCTCACCCACACTCCAGCGCCATGCTAGGCTACCCACCGGTGGTGCAACCCATTCAGCCACCAGCCATCATGCATGCCCAATACTCGCCCGGCTCACAGTCGCATCTGGATCAGTTGCCGACTCCCGGGCAGCTTCCTCCGACGATGCCGCATCGGGAGGACTTCTTCGCGGAGAGATTCCCACTGAATTTCACCACAAAGATGCTATCGCCGGAGCACCATTCGCCCATAAGGTCGCCAGCAGGACATGGCCATGGACATGGTCATGGCCACCTccacggccacgcccacattccGCGATCGCCCTTCTTCAATCCGATCAAGCATGAGATGGCCGCCCTTCTGCCACGCCCTCACAGCAACGACAACTCATGGGAGAACTTTATCGAGGTGTCGAACACCTCGGAGACAATGAAGCTCAAAGAGCTCATGAAGAACAAGAAGATCAGCGACCCCAACCAATGCGTCGTCTGCGACCGCGTCCTCTCCTGCAAGAGTGCTCTCCAGATGCACTACCGCACCCACACGGGGGAGAGGCCCTTCAAGTGCCGCATCTGCGGACGCGCCTTCACCACGAAGGGCAACCTGAAGACTCACATGGCGGTGCACAAGATCCGTCCGCCCATGAGGAACTTCCATCAGTGTCCTGTCTGCCACAAGAAGTACTCCAATGCTCTGGTGTTGCAGCAGCACATCCGTCTCCACACGGGTGAACCCACCGACCTGACCCCCGAGCAGATTCAGGCTGCCGAGATCCGTGATCCGCCGCCCTCGATGATGCCAGGTCACTTCATGAATCCCTTTGCCGCAGCCGCCTTCCACTTTGGCGCAATGCCGGGAGGAGGCGGTCCTGGAGGACATCCCGGAGCGGGCGGCATGCACGGAGGTCCTCACAACGGCGCCTTGGGTTCGGAATCATCGCAGGGTGATCTGGATGACAATATGGACTGTGGCGACGGGGAAGACTTCGATGATGCCTCCTCCGAGCATCTGTCCAACAACAATGAGTCGGCTGGAGATGAGCGTCCGCGTTCTGGGGATGATTTCAAGTCGCTGCTGTTCGAGCAAAAGCTGCGCATCGATCCCACGGGCGTGGTCAACATTAATAGCCATCAGCGTCCCCGTTCCGCCGCCAGCAATGCCAACTCCGTTGGCTCCGTCTCCGCCTCGGCCTCGCCCTCCGCTCCCACCAGTCCCAGCTCGCAGCCGAAGCCCAGCTGTTCGCCCGTGCGCTCCATCTCTGAGGCCTCTCAAGGTGCCCTCGATCTGACGCCACGTGCTGCGCCTCCCCCTACGCTTGCCACCACCTCCAGCTGCAGCTCAAGATctccgctgccgctgccgctgcccgCTGAGCGCAAGGAGAAGACCATCAGTCCGTTGAGTCAGCAGCCGCCGGCAAGGAGTCCCAATGGTCCAGCCTCGCTGCTCTCCTCCCCGCTGCCGCCCTCTGTGGGCATTGACTGCCTGCCTCCGGGACTGCAGCAtcatctgcagcagcagcaccagcatcTGATGCAGCAACAGGCTGCggtggcagctgcagctgctgcgcaACACCATCACCATCAGATGCAGCAACACGCGGCAGCGTTGCACCAACACCAGGAGCAACTGCGCCGCGAGGCGCAGGAGGTGCAACAGAAGGCAGCAGTCGCCGCAGCCGCTGCAGCAGCCGCTGCCCAGCGTCAGACATCGCCACAGGCATCGCCGAGGTCAGGTGAACCTCCGGCGGGTCCTGCCACTCAGCCCAATCCGATGATCGCGGCACGTCCGCCCTTTGGGATGTTCCCCAATCTGCCGATCTTCCCGCCGGCAACGACGCAGAACATGTGCAATGCCATGAACCAGATTGCGCAGTCCGTGATGCCAGCGGCGCCCTTCAATCCACTGGCGTTGAGTGGGGTCAGGGGCAGCACCACATGCGGCATCTGCTACAAGACATTCCCCTGCCATTCGGCGCTCGAGATTCACTACAGAAGCCACACCAAGGAGCGGCCATTCAAGTGCAACATCTGCGATCGCGGCTTCACAACTAAGGGTAACCTCAAGCAGCACATGCTGACACACAAGATACGCGACATGGAGCAGGAGACCTTCAGAAATCGTGCAGTAAAGTATATGAACGAGTGGAGTGACGATCGCgaataa
Protein Sequence: MKNHLSNVLCAMRSDFKDNHQETINKMIQFGTVKYGIVKQLKDRARSADKDIASDQEDNGACSPLTTATASASAGNSPSPSRSPQRQSEDEGEREAESVLDKGVSKEQKIDSDSAVEALEDHNHNNQNNNNKVIMTKPPVEHELEHSGQSNASMPHSPTAATSVTEEAAAQPTNSDVDVEMQEEAEETPRQTSTTPPESQAAIAGAAPVTLEAIQNMQMAIAQFAAKTIANGSSGADNEAAMKQLAFLQQTLFNLQQQQLFQIQLIQQLQSQLALNQVKPNEEEADEELEPEEREDGETDTYEEEERIADMELRQKAEARMAEAKARQHLINAGVPLRERSRSASPAAETISAETLKRKREEDACVKPPSSSLRLSGERESAQDALSKLKAMENMPLPFGSDLASSIITNHDDLPEPNSLDLLQKRAQEVLDSASQGILANNMADDFAFGDKSGEGKNRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHAQKFPHVPMNATPIPEHMDKFHPPLLDQMSPDSSPTHSPAPASSLPPTSSATSALTQAQASMSMSFPSSPAFPSLQGLYRPPMELLKSLGAAAGSTAGLPHPFFPQMPGLGAALKHSQQQSQDMPTDLRKSSGPSSPHDEEEDLTMGRLPVKTELLEEEKPENTRRESTTGEMEAEPETEPEPEAEPLPLEVRIKEERIDEEQEHQQTAQIKSDRHSPSPSTVPQSPPLNPRHLHAHPHSSAMLGYPPVVQPIQPPAIMHAQYSPGSQSHLDQLPTPGQLPPTMPHREDFFAERFPLNFTTKMLSPEHHSPIRSPAGHGHGHGHGHLHGHAHIPRSPFFNPIKHEMAALLPRPHSNDNSWENFIEVSNTSETMKLKELMKNKKISDPNQCVVCDRVLSCKSALQMHYRTHTGERPFKCRICGRAFTTKGNLKTHMAVHKIRPPMRNFHQCPVCHKKYSNALVLQQHIRLHTGEPTDLTPEQIQAAEIRDPPPSMMPGHFMNPFAAAAFHFGAMPGGGGPGGHPGAGGMHGGPHNGALGSESSQGDLDDNMDCGDGEDFDDASSEHLSNNNESAGDERPRSGDDFKSLLFEQKLRIDPTGVVNINSHQRPRSAASNANSVGSVSASASPSAPTSPSSQPKPSCSPVRSISEASQGALDLTPRAAPPPTLATTSSCSSRSPLPLPLPAERKEKTISPLSQQPPARSPNGPASLLSSPLPPSVGIDCLPPGLQHHLQQQHQHLMQQQAAVAAAAAAQHHHHQMQQHAAALHQHQEQLRREAQEVQQKAAVAAAAAAAAAQRQTSPQASPRSGEPPAGPATQPNPMIAARPPFGMFPNLPIFPPATTQNMCNAMNQIAQSVMPAAPFNPLALSGVRGSTTCGICYKTFPCHSALEIHYRSHTKERPFKCNICDRGFTTKGNLKQHMLTHKIRDMEQETFRNRAVKYMNEWSDDRE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00534052;
90% Identity: iTF_00534052;
80% Identity: -