Drel008300.1
Basic Information
- Insect
- Drosophila rellima
- Gene Symbol
- -
- Assembly
- GCA_035043635.1
- Location
- JAWNMV010000529.1:2683769-2686321[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.013 0.92 10.1 3.7 3 23 286 306 284 306 0.97 2 12 0.005 0.35 11.5 0.6 1 23 312 337 312 337 0.92 3 12 0.0049 0.34 11.5 0.7 2 23 345 369 344 369 0.93 4 12 0.0011 0.074 13.6 2.7 1 23 381 403 381 403 0.97 5 12 2e-06 0.00014 22.1 0.1 1 23 410 432 410 432 0.98 6 12 0.013 0.91 10.2 0.2 1 23 438 460 438 460 0.97 7 12 0.069 4.8 7.9 3.0 1 23 466 489 466 489 0.97 8 12 0.0053 0.37 11.4 4.6 1 23 495 517 495 517 0.97 9 12 0.11 7.6 7.3 5.3 2 23 524 545 523 545 0.96 10 12 0.00012 0.0085 16.5 0.2 1 23 652 675 652 675 0.95 11 12 0.1 7.3 7.3 1.3 1 21 681 700 681 703 0.75 12 12 1.7e-07 1.2e-05 25.6 3.0 1 23 709 731 709 731 0.98
Sequence Information
- Coding Sequence
- ATGGATGTGGCGAGGACATACTCGATACACACGCTGTGTCGCATTTGCCTGAATCTGCTGCAAAACGATGCTGCCTACGATTTATATATGGTTCCAGGTCTGGCCAAAAAATTGTGTCTGTGCACGTCGCTGTCTGTGGAGCAGAACGATGGATTCCCAAAGAATCTGTGCACCAATTGCTATGCGCGGCTCAACGATATGCATGACTTTCAAAAGCTGTGCGTCGATTCGGTGCAAAAGTTTCAGGACATGGTCGCCAGCAACGCCTTCACATGCCAATCGAACTTCGATGTTCTGGATCCGAGCACCTCAGCCCACGATCTGCCCAATGAGGATGAGGATCATATCAACTTTGATCCGCTGTTGAATCACAAAATGGAACTGATTGAGAACGAAGAGGATGTGTTCAAAATGCTCGAGGATGTCGACAAAGAAGCCGAGGAGGTCGAAAAGGAAgtgaaacaaacaaataagctAAACAACAggcaaagggaaagggaaatgGAAACTAAGGAacccaacaccaacaacatgtTCAACGAGGACAGTTCCTCAGCGGAGAGCGGCAATGACAACGATCGGGATATGGATTTTGAGCCCAACAGCAGCGATGATGACATTCCCCTGGCGCAGCGGATGCGCAGCAAGGCCAAGAACACCAGAGCAGCCAAGTCGAAGCCGAAGAAGAAACGCGTCACTGATCAGGAAGATGATGACGAGTTCAGCACATCTGAATCCTCCTCGtccgatgacgacgacgatgatgatgatgatcccGAGAACAAAGGCCGCAAGGAGAAACCAAAACGCAAAAGGATTCCAGTTGCCGAACGTCATCTGCATCGCATCATCGACTGTCACATTTGTCATCAGAAGTTCAAGAAGGCCATACGCTACGAGGAGCACATGAAGTACCACAACGATCTGTTGCCGTTCCAATGCAAGGTGGAGTCCTGCAAGAAGGGCTTCACCACGGCCAACGGACTGCGCATTCATGTGGATCACGCCCACACCGAACTGTCCGAGGTGCACGCCTGCAGCGTCGAGGGCTGTGGCAAGACATTCCCACGCATCCGTCTCCTCACCTTCCACATGAAGAAGGTGCACAACATTTCCAAGTCGGCGGCGCCATTGCGCGACTTCCCCTGCACGGAATGCCAGACCGTCTTCCGTTGTCCAACCGCACTCAAGAAGCACATGTACAAGCACACGGGCGAGGAGCTGCCCTATCCATGCAACATCTGCGGCAAGCGCTTTGTCATCAACAGCGCCCTCAGGGATCACTTGATGCGACATGCCGGCATCAAGAATCACGTGTGTCCCTACTGTGGTGTGGGCAAGACCACCAGGCAGGAGTGGAACGCACACATCTTGACGCACACCAAGGAGAAGAAGTTCAAGTGCCGGCAATGCGATCATGCCTCCCACAACAAACAGGCATTGTCCAATCACGTCAAGGTCGTCCACATGAAGATCAAGAACTTTGCCTGCCAATACTGTGGCAAGACGTTTGGCAAATCCCATGCCTGCAAGGTCCATGAACGGACGCACACTGGCGAGAAGTGCTGCGAGTGCAAGATCTGTGGCAAGATCTTCCTCTGCGAGAAGAGTCTCACCAAGCATTTGAAGACGCACGAGAAGCGCGATCTGCCGCCCGTGGATATTCATCGTCCGCTAAACATtccgttgccagttgccagtcaTCTGCCGGATCATATGCAGATGCAGGGCGATAATCTTATGGGTCCAAATGCGGCGGATGATTTGCTCAAGGCATGTGGCGGCGGACCACCAGGAGtgggagcagcagcaggagctgcTAAGCCGAAGAACTCCAGACGTGTACAACGTGTGGACATCTCTCAATTAGCCGGCACCTCTGTGAATCCCATACCATCGGTATCTGTGCCCTCCTGGTCGCCCCAGGTCAACTTCACCAAGAAGGAGGGCCAACACATTTGTCCAGGCTGTGGACGTGGCTTCAATAACATTGGCAACATGAAGCTCCATTACAAGATCATACACGAGAAGGTCAAGGATTTCGCCTGTCGCTTCTGTCCCAAGCGTTTCTCCAAGGCGCAAATCTTGCGGCATCACGAATGGATACACACCGGGGAGAAGCCCTTCGAGTGCAAGATTTGTGGCAAACATTTCCGCCAGGAGACGGCACTGAAGAAGCACATCAAGACGCACGACAAGCCCAACAGACGCCACTATCCGGAAAAGACGGATCCGACGCCACCATTTCAGCATAAGATCGAACCGCGTGAAATTGATCGCGAGCCAAGGAACTATGATCAGTATCAAGATCCGGCTGCCGAGCGAGCGGCGGCAACGGCGGAGCTCCTGGCCCACCAGATCGAGGAGAACGAGGCGAAGCGAAAGGCGGACATAGAGCGGCGAAAGATTCAGGAAGCCGCCTGTGAGCAGCTCAACAAACTGCAGAAGCAGCAGGAGATTGAAAAGGCGACCACATCCTATGATGGTTACTATGCACAAAAGGCTCAAGCCGAAGGCATCAGCGTGGACGCACTCAAGATCGATCATGTGTAA
- Protein Sequence
- MDVARTYSIHTLCRICLNLLQNDAAYDLYMVPGLAKKLCLCTSLSVEQNDGFPKNLCTNCYARLNDMHDFQKLCVDSVQKFQDMVASNAFTCQSNFDVLDPSTSAHDLPNEDEDHINFDPLLNHKMELIENEEDVFKMLEDVDKEAEEVEKEVKQTNKLNNRQREREMETKEPNTNNMFNEDSSSAESGNDNDRDMDFEPNSSDDDIPLAQRMRSKAKNTRAAKSKPKKKRVTDQEDDDEFSTSESSSSDDDDDDDDDPENKGRKEKPKRKRIPVAERHLHRIIDCHICHQKFKKAIRYEEHMKYHNDLLPFQCKVESCKKGFTTANGLRIHVDHAHTELSEVHACSVEGCGKTFPRIRLLTFHMKKVHNISKSAAPLRDFPCTECQTVFRCPTALKKHMYKHTGEELPYPCNICGKRFVINSALRDHLMRHAGIKNHVCPYCGVGKTTRQEWNAHILTHTKEKKFKCRQCDHASHNKQALSNHVKVVHMKIKNFACQYCGKTFGKSHACKVHERTHTGEKCCECKICGKIFLCEKSLTKHLKTHEKRDLPPVDIHRPLNIPLPVASHLPDHMQMQGDNLMGPNAADDLLKACGGGPPGVGAAAGAAKPKNSRRVQRVDISQLAGTSVNPIPSVSVPSWSPQVNFTKKEGQHICPGCGRGFNNIGNMKLHYKIIHEKVKDFACRFCPKRFSKAQILRHHEWIHTGEKPFECKICGKHFRQETALKKHIKTHDKPNRRHYPEKTDPTPPFQHKIEPREIDREPRNYDQYQDPAAERAAATAELLAHQIEENEAKRKADIERRKIQEAACEQLNKLQKQQEIEKATTSYDGYYAQKAQAEGISVDALKIDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01570408;
- 90% Identity
- iTF_00534754;
- 80% Identity
- -