Basic Information

Insect: Drosophila rellima
Gene Symbol: -
Assembly: GCA_035043635.1
Location: JAWNMV010000529.1:2697727-2700009[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.013 0.94 10.1 5.3 2 23 230 251 229 251 0.97

2 12 0.0011 0.08 13.5 5.7 1 23 257 282 257 282 0.95

3 12 0.0023 0.16 12.5 1.6 1 23 289 314 289 314 0.96

4 12 0.00049 0.034 14.6 3.6 1 23 322 344 322 344 0.97

5 12 7.3e-05 0.0051 17.2 0.9 3 23 353 373 351 373 0.98

6 12 0.00011 0.0079 16.6 0.1 1 23 379 401 379 401 0.98

7 12 0.12 8 7.2 7.4 1 23 407 430 407 430 0.98

8 12 3e-05 0.0021 18.5 2.9 1 23 436 458 436 458 0.95

9 12 0.00011 0.0076 16.7 2.1 1 23 464 486 464 486 0.99

10 12 3.7e-06 0.00026 21.3 0.3 2 23 567 589 566 589 0.96

11 12 0.00039 0.028 14.9 4.7 1 23 595 617 595 617 0.96

12 12 0.00012 0.0081 16.6 2.2 1 23 623 645 623 645 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.013	0.94	10.1	5.3	2	23	230	251	229	251	0.97
2	12	0.0011	0.08	13.5	5.7	1	23	257	282	257	282	0.95
3	12	0.0023	0.16	12.5	1.6	1	23	289	314	289	314	0.96
4	12	0.00049	0.034	14.6	3.6	1	23	322	344	322	344	0.97
5	12	7.3e-05	0.0051	17.2	0.9	3	23	353	373	351	373	0.98
6	12	0.00011	0.0079	16.6	0.1	1	23	379	401	379	401	0.98
7	12	0.12	8	7.2	7.4	1	23	407	430	407	430	0.98
8	12	3e-05	0.0021	18.5	2.9	1	23	436	458	436	458	0.95
9	12	0.00011	0.0076	16.7	2.1	1	23	464	486	464	486	0.99
10	12	3.7e-06	0.00026	21.3	0.3	2	23	567	589	566	589	0.96
11	12	0.00039	0.028	14.9	4.7	1	23	595	617	595	617	0.96
12	12	0.00012	0.0081	16.6	2.2	1	23	623	645	623	645	0.98

Sequence Information

Coding Sequence: ATGAATGAGGAAGCTCCACCTTCGATGCATACCATATGCCGCACTTGTCTgtccaacttgcaactggaTGAAGCCTTCGACCTGTTCGCTGTTCCGGGCCTGGCCaagaaattgtgtgtgtgcacttcGCTCTCGGTGGAGCACCAAGATGGATTCCCGAGAAACCTCTGCACCACCTGCCACAGTCGCCTCAATGATTTGCACGACTTTCAAGTGCAGTGTGTGGACTCTGTGGAAAAGTTCAAGGAGTTGGTGTCCAGAAACAACTTCGTAATCCGGACTATTCCGGAAGACGAACCTCGTGTCGTGAATGCTGCTTTGCAGGATGTTGTCCATGAAGAGGAGCACTTTTGTTTTGACCCGTTATTgaatacaaaaatagaaatcgGCAATCAGGAGgatgtttttaaaatgattgaagATGTCGATAAGGAATCTGAGGATGGAGAGAGTTTTAAGGATGCATTTAATCAAAGCGGAAGCGACGATAGCAATGAGGCTGAGAACTTCCAAGCGGATAGCAGCGATTCCGATGATGAGATGCCGCTGTCACGTCTACGGAGTGGTACCAGAGCCACAAAGTCCACGACCAAAAAGGATGATGAATCGCTTAATAAAGCtgaaccaaaacaaaaaccaaagcgTAAGCGGATCCCAGCTGCTGAGCGTGAGCTTCATCGGTTAATCCAGTGTCACATTTGTCGTCAGAATTTTAAGAAGCTTGTATGCTATGAGGAGCATATGAAACGCCACAATGATCTATTGCCATTTCAGTGCACAGCGAAAAAGTGCCACAGGGGCTTTACGACATCCACGGGACTCAAACATCATATGGAGCACGCGCACTCGGAGCTATGCGAACTGCACCGCTGTACAGTCGAAGGATGCGAGGAATCCTTTACAACAACTCGCATGATCACCAAACATCTCAGAAAGGTGCACAATATTGCCAAGCCGGAAATCCATCCATGTTCCGAATGCGACAAAGTATTCCGCTGTCCAATGGCGCTGAAGAAACACATGTATAAACACACCGGCGAGGAGTTGCCCTTTGGTTGTAACATCTGCCAGAAGCGCTTTCGGGTCAATACTGAACTCCGAGATCATCTTTTGCGCCATGCCGGAATCAGAAACTTTGTGTGTCCTTATTGTGGTGTGGGCAGAACCACCAAACAGGAGCTGGACAAGCACATCTTGACGCACACCAAGGAGAAGAAGTACAAGTGTGATCAGTGCGATCACACCTCCCACAACAAGCAATGTATGACCAAGCACATCAAGGTGGTTCACATGAAGATCAGGGACTACTTGTGCCAGTATTGCCAAAAGTCATTTGCCAGCGCATATCACCTGAAGACCCATGAGAAGTTGCACACTCGCAACGATTGCTTCGAGTGCAAAATCTGTGGGAGGAAATTCCTCTTTGAGAGTAGATTAACGAAGCATTTGAGGACGCATGCCAAACAGGGAAGCAAATCTGCAGTGAGCTCGACAAAGGTTGAAGTCGATTTAGATGTCCAGACGGATGTGACAGAGGATGTGAAAGTCGCAGAAATACCAGTCAAGCCAAGGGATCCGCGTCGAATTGAGATTGTGGATATATCTCAATTGGCTGGCACCATCATCAATCCGATCACATCGGTGTCTGTACCATCCTGGTCGCCACAAGAGAACTTCAACAAAAATGAAGGCAAGATCGTTTGTCCGGATTGTGGGCGAGGCTTCAACCATCTCAGCAATATGAAGCTCCACTACAGGGTTGTGCACGAGAAGATCAAGGACTATGCCTGTCGCTTCTGTCCGAAACGATTTAGCAGATCTCAATATCTCCGTCATCATGAGTATACGCATACGGGGGAGAAGCCCTACGAGTGCAAAGTATGCCAACAGCGCTTTAGACATGATGCAACATTGGGCAGGCACATGCAATCGCACAACAAGCCTCCAAAGGATCCAAAGAATCCTAAGCGCCAGGCAAAAGATCCCCAGGAGCCGAGACTAACACTGAATACGGAACCAACAACGAATTACGAACAGTACCGCGATCCAGATGCCGAGCGGGATGCGGCAGCGGCTGAGTTGATGGCCCAACAGCTCAACCGAGATGAAAGCGATGCAAAGCCCAAGTGGGGATTAGCCAAGGGCGGAGAGATTTCAGAGGCAGCTCACGAACAGCTCCAAAAGTTGCGGGAGAAGCAACTTCTAAAGATTACCTATGATAGCCTCGCTGACCAAATCCCCGAATCGGGTATTCGCAAGGATATTGTCAAAAATCATGTATAA
Protein Sequence: MNEEAPPSMHTICRTCLSNLQLDEAFDLFAVPGLAKKLCVCTSLSVEHQDGFPRNLCTTCHSRLNDLHDFQVQCVDSVEKFKELVSRNNFVIRTIPEDEPRVVNAALQDVVHEEEHFCFDPLLNTKIEIGNQEDVFKMIEDVDKESEDGESFKDAFNQSGSDDSNEAENFQADSSDSDDEMPLSRLRSGTRATKSTTKKDDESLNKAEPKQKPKRKRIPAAERELHRLIQCHICRQNFKKLVCYEEHMKRHNDLLPFQCTAKKCHRGFTTSTGLKHHMEHAHSELCELHRCTVEGCEESFTTTRMITKHLRKVHNIAKPEIHPCSECDKVFRCPMALKKHMYKHTGEELPFGCNICQKRFRVNTELRDHLLRHAGIRNFVCPYCGVGRTTKQELDKHILTHTKEKKYKCDQCDHTSHNKQCMTKHIKVVHMKIRDYLCQYCQKSFASAYHLKTHEKLHTRNDCFECKICGRKFLFESRLTKHLRTHAKQGSKSAVSSTKVEVDLDVQTDVTEDVKVAEIPVKPRDPRRIEIVDISQLAGTIINPITSVSVPSWSPQENFNKNEGKIVCPDCGRGFNHLSNMKLHYRVVHEKIKDYACRFCPKRFSRSQYLRHHEYTHTGEKPYECKVCQQRFRHDATLGRHMQSHNKPPKDPKNPKRQAKDPQEPRLTLNTEPTTNYEQYRDPDAERDAAAAELMAQQLNRDESDAKPKWGLAKGGEISEAAHEQLQKLREKQLLKITYDSLADQIPESGIRKDIVKNHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00585379;
90% Identity: iTF_00534007;
80% Identity: -