Basic Information

Insect: Drosophila quinaria
Gene Symbol: chn
Assembly: GCA_035047525.1
Location: JAWNPO010000471.1:4149197-4155359[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.0015 0.12 13.3 1.6 1 23 319 341 319 341 0.97

2 6 0.11 8.4 7.4 3.4 1 23 347 370 347 370 0.95

3 6 0.00028 0.022 15.5 0.7 1 23 506 528 506 528 0.99

4 6 0.28 22 6.1 0.1 1 23 532 555 532 555 0.96

5 6 1.6 1.3e+02 3.7 0.1 3 23 560 581 559 581 0.92

6 6 0.027 2.2 9.3 1.8 3 23 1333 1354 1332 1354 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.0015	0.12	13.3	1.6	1	23	319	341	319	341	0.97
2	6	0.11	8.4	7.4	3.4	1	23	347	370	347	370	0.95
3	6	0.00028	0.022	15.5	0.7	1	23	506	528	506	528	0.99
4	6	0.28	22	6.1	0.1	1	23	532	555	532	555	0.96
5	6	1.6	1.3e+02	3.7	0.1	3	23	560	581	559	581	0.92
6	6	0.027	2.2	9.3	1.8	3	23	1333	1354	1332	1354	0.96

Sequence Information

Coding Sequence: atggcaacattAATACCGGCGATCGCAGGAAATCCAGCGAGCGCCCAGTCCTCAAATGTTGAGGCCACATATGAAGATATGTTCAAAGAAATCACACGTAAACTGTACGGCGAGGAGACCGGCAACGGTTTGCACACGCTCGGCACACCGGTGGCTCAGGTGGCCACCAGTGGACCCACAGCGGTGCCGGAGGGCGAGCAACGCTCCTTTACCAATTTGCAACAAATTGATCGCACCGCAGCGCCCAGCATTGAGTACGAGGCAAGTGGTGCTGCGGGCGGTGCAACAGTGGCCACCACCCAGGCCAATGTaatccagcaacaacagcagcagcagcagcaacaacagcaacaacaacaatccgaGTCGGGCAACTCTGTGGTGGTCAGCGCCAGCGGCAGTGGCGCCACTGTGGTGCCGGCGCCCAGCGTCGCCGCCGTTGGCAGCTTCAAGTCCGAGGATCACCTGAGCACCGCCTTTGGATTGGCCGCTCTCATGCAGAACGGCTTTGCCGCCGGCCAAGCGGGTCTCCTCAAGGCcggcgagcagcagcagcagcgttgGGCACAGGATGCCGGAGCTgcggagcaacaacagccgcaACTTGTCCAGTGGACAACAGGTGGCAAGCTGCAGAGCTATGCCCAGgtcaatcagcagcagcaacagcagcaacaacagcaacagcagcagcaacaacaacagcatcaaagCACGCCCAAGTCcaaAAAACATCGTCAGGAGCATGCAACGGAGTTGATCTATGCCAGCCCCTCCACATCGGCCAATGCGGCCCAGAATCTGGCCCAAAACACGCCCACCTCAGCGCCCacccacagcagcagcagcagcggcggcagcagctccTCCGGCGGCGGCAGTCGCAAGAAATCGTCGCAGGcacaggcagcagcagccgcagcagctgcCAATGGAGTGCACATTGTGAAGCGTTATGCCTGCACCCACTGTCCGTATTCGACGGATCGCCGGGATCTGTACACGCGTCACGAGAACATCCACAAGGATGAGAAGCCCTTTCAGTGCTATGCCTGCCTCAAGCAGTTCAATCGCGCCGATCACGTCAAAAAACACTTTCTGCGCATGCATCGCGAACTGCAGTACGACATCAACAAGACGCGTCGACATGTGCCCGCTGGCAGTGGATCGGGTGGCGGTGGTGGCTCCGGCGGCGGATCACATCATTCGGGCGGACGTGGCAATGTGACGATCAATGCCACGGGCGTTAACATTGACAATGCATTCCTGGAGGCCCAGCGACATCCCACCTCGACCAGCATGAGCATTGTGGAGACTATCGAGGCGGTCGCCTCCGCGGCCGACATGCCCCTCGCCCAGCTCAAGCAGGAGAAGCTCGACGATGGCTCTGTCCTCCCTTTACATGTGGGCGCCATCATGAACAATGCCCAACAGCCGGTGGCCAGTTCCAGTTCCGGTTCCGGCAGCAGCTCAGCCGCCGGCTCGGGGCTGTTGAAGCCCAAGCGAGAGAAACGCTTCACCTGCTGCTACTGTCCCTGGTCGGGTGCCGACAAATGGGGCCTCAAACGGCATCTCAACACCCACACAAAGCCATTCGTTTGCCTGCTCTGCGATTACAAGGCGGCCCGCTCCGAGCGCCTGGCCACCCATGTCCTCAAGGTGCACAACAAGCGGGCCTGCAGCAAGTGCTCCTACCTGGCCGACACGCAGGAGGAGTTCCAGGTTCACATGAGTGATGTGCATCCGCATGACAATCGTCCGGCgcgcagcaacagcaccaacaataacggcaacaacaacaatagcggcaacaacaacaacaacaatggcaacaataatGCAACACATAGCCAGAACTTGAATGTCTTGCGAACCATTGGAAACACCTTGGTGGCCAATAATCAACTGAACACGTTTCACAATGCCGGCAACGCTTTTGGttcATCAAGTGGTGGCCAAACCGTTGGCAATGTGAGCGGCAGTGGAGCCGTCACCATCTACACCACAACCACCAATGAGGGTGTGTCTGGAGGCGGCGGAAGTGGCAACAACATCACGGGCGGACCCCTGCAGGAGATCATTGTGAATCCTACATCGATGGTGGGTTGGCGTCTCAGTGCCAACGGATCTTTGATACCACCGCACGATCTCCTCACCGGCAGCCTGCCGAATGCCGCCACACAAAAACGCGGCTCGGAGCGTTTATTTCAATACCTCGAAGCCGAGGGCAGCGATCCGGAGGACTATGCGCGTCTGCTCAAAATGGACGCCATTAGTCGCAACACAGCTTCGGTCGCTCAGGATTTTCATAAAGCGGGAGGCGTGCACGAGTTGAAAATACCAGCAAATCATCAACTCCTGTTCAATAATAAACTGCCTTCGCAATGGACGACACGTGAGGCTGCAGCGCTTCTTCACAGCTTGAGCAACAtgggcagcaacagcagcagcaacatcaacagcagcggcaacaacaacaacagcagcagcgagaaAAGTTTGGCACAGCGACAAAAGTTTGGAGTAATGCGTGCTCGGCAACATTCGACGGGAGAGGATGATGAGAATACGCCTTCATCGGCATCATCGTCCTCGTACTCGAGCGATGAGTTTAACATGTCGGCAACGACGTCGCCAATGAAAGTGTCGCGtcatggcaacagcaacagcaacaacagcagcagcagcaaaagcttGAGAGCTTCCGAAGAGAGCGAGCACAAAGAGAGCAGCAACAAGGCGATGATGGCAACGGCATTTCTGGAAGCGGCAGCCTACGAACAAACGGCCATCGAGCTGCTCGCCAGCAAGCGAAAGCTCAAAATTGAGTATGACGAAGATCAAGagaatcaacaacaacaacagcagcagcagcgagtgCAGCTTATTAAATCGTCTCCCGCGTATaaactaaacaacaacaacatcaacaataataataataacaacaacaacaacaacaacagctactaCAAAGAGAAATCTCATAGAAATGCCGCACATCATCGCCAAGATGATAAGGAAAACAACACGAGCAGcactgaaacaacaacaacagcagcaactgttgccgcagcagcggcagcaactgttgcagctgcagcagcagcagctggtgTCGCAGCAACaccaaacagcaacaataacaacaacacaacaaccacaCCTTTTCTCACACAAATGGAGTACCAGAATCTCAATCGCATTGGAACACAATTTCAGAATTATGTTAAGGATATTATCAACAAATATTATGCAGCCGAAACGCCGCTTATGCTGGCCGCGGCCGCAGCAGCGCTGCCGACGGCGACGACTACGGGACAACAgcgcgagagagagcgagagcgagatcAGCTGTACAGAGAGCGGGAGAGCGGCGAGCAGCAATTGTCGCCCGGCAAACGACGACGCCTGATGAGCGAGACGGAGGAGTACATTGAGTATTTGCGCAACAAGGAGGACATCACGCTCACCATAACACCCAAGGTGCCGTCAGCGCCGACGCTgccgtcgcagtcgctgcttAAGCGTCAGCTGGATCTGGCAGCGCCGCGTAAAAGTCCCAAgaagccagcagcagcagcaacccaAGCTCCtctcaacagcaacaacaacagcaactgcagtGCGTCGCGCAAGTCTCTCAATCATCTGGCaacgctgctgccgctgctcgcCGACGCCGCCAGCAAGCAGGAGTATTTAGCAGCGCCGCTCGACTTTAGCAGAAAGTCGGACGGCGAGACGGGACGCAGTGCGCGCAAGCAGGCGCAGCCGAAGCGAATGCGACTCACGCCCGAGGCTGTGGTCGCCGCGCTGCGCGACAAGCATCTCAACCGGCTCGGTCAGCAGAAGCTCGGCTGCGCCAGCTGCGCGGCCAGCCAGCGACGCAGCGGAAGCAGCGGGGGCGGCGTAAGCTTCAATTATCACACGATTGGCTCTCTCGCACTGCATCGGTTTTGGAAGCATCGAGCTTTGAGAGCTGCCTCTCGCAATTGCAAACAGTGCAGTGCACAGTTTGAACGACGATACAGTTTATTGTTGCATCGCCGATTGAAGCACTCTCCACGACTCTCTGCTCTCTCGCGCCCTGTCCCTCTCCCAGAGAAGACAGCACTCTCTCATTAA
Protein Sequence: MATLIPAIAGNPASAQSSNVEATYEDMFKEITRKLYGEETGNGLHTLGTPVAQVATSGPTAVPEGEQRSFTNLQQIDRTAAPSIEYEASGAAGGATVATTQANVIQQQQQQQQQQQQQQQSESGNSVVVSASGSGATVVPAPSVAAVGSFKSEDHLSTAFGLAALMQNGFAAGQAGLLKAGEQQQQRWAQDAGAAEQQQPQLVQWTTGGKLQSYAQVNQQQQQQQQQQQQQQQQQHQSTPKSKKHRQEHATELIYASPSTSANAAQNLAQNTPTSAPTHSSSSSGGSSSSGGGSRKKSSQAQAAAAAAAANGVHIVKRYACTHCPYSTDRRDLYTRHENIHKDEKPFQCYACLKQFNRADHVKKHFLRMHRELQYDINKTRRHVPAGSGSGGGGGSGGGSHHSGGRGNVTINATGVNIDNAFLEAQRHPTSTSMSIVETIEAVASAADMPLAQLKQEKLDDGSVLPLHVGAIMNNAQQPVASSSSGSGSSSAAGSGLLKPKREKRFTCCYCPWSGADKWGLKRHLNTHTKPFVCLLCDYKAARSERLATHVLKVHNKRACSKCSYLADTQEEFQVHMSDVHPHDNRPARSNSTNNNGNNNNSGNNNNNNGNNNATHSQNLNVLRTIGNTLVANNQLNTFHNAGNAFGSSSGGQTVGNVSGSGAVTIYTTTTNEGVSGGGGSGNNITGGPLQEIIVNPTSMVGWRLSANGSLIPPHDLLTGSLPNAATQKRGSERLFQYLEAEGSDPEDYARLLKMDAISRNTASVAQDFHKAGGVHELKIPANHQLLFNNKLPSQWTTREAAALLHSLSNMGSNSSSNINSSGNNNNSSSEKSLAQRQKFGVMRARQHSTGEDDENTPSSASSSSYSSDEFNMSATTSPMKVSRHGNSNSNNSSSSKSLRASEESEHKESSNKAMMATAFLEAAAYEQTAIELLASKRKLKIEYDEDQENQQQQQQQQRVQLIKSSPAYKLNNNNINNNNNNNNNNNNSYYKEKSHRNAAHHRQDDKENNTSSTETTTTAATVAAAAAATVAAAAAAAGVAATPNSNNNNNTTTTPFLTQMEYQNLNRIGTQFQNYVKDIINKYYAAETPLMLAAAAAALPTATTTGQQRERERERDQLYRERESGEQQLSPGKRRRLMSETEEYIEYLRNKEDITLTITPKVPSAPTLPSQSLLKRQLDLAAPRKSPKKPAAAATQAPLNSNNNSNCSASRKSLNHLATLLPLLADAASKQEYLAAPLDFSRKSDGETGRSARKQAQPKRMRLTPEAVVAALRDKHLNRLGQQKLGCASCAASQRRSGSSGGGVSFNYHTIGSLALHRFWKHRALRAASRNCKQCSAQFERRYSLLLHRRLKHSPRLSALSRPVPLPEKTALSH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00547681;
90% Identity: iTF_00534204;
80% Identity: -