Basic Information

Insect: Drosophila quinaria
Gene Symbol: PRDM1
Assembly: GCA_035047525.1
Location: JAWNPO010000237.1:2772107-2778675[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 3.2e-05 0.0025 18.5 2.5 1 23 835 857 835 857 0.99

2 5 9.5e-06 0.00076 20.2 5.1 1 23 863 885 863 885 0.98

3 5 2e-06 0.00016 22.3 4.3 1 23 891 913 891 913 0.98

4 5 0.00066 0.053 14.4 2.4 1 23 919 941 919 941 0.97

5 5 0.00011 0.0089 16.8 0.1 1 22 947 968 947 968 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	3.2e-05	0.0025	18.5	2.5	1	23	835	857	835	857	0.99
2	5	9.5e-06	0.00076	20.2	5.1	1	23	863	885	863	885	0.98
3	5	2e-06	0.00016	22.3	4.3	1	23	891	913	891	913	0.98
4	5	0.00066	0.053	14.4	2.4	1	23	919	941	919	941	0.97
5	5	0.00011	0.0089	16.8	0.1	1	22	947	968	947	968	0.96

Sequence Information

Coding Sequence: ATGCATGGACATCATCAGcatccacaacaacagcagcaacagcagcaacaacaagtgcagCCAGCGCCAATCGCAATGAAGTCCACGACGTCAGGCAATACACAATCCACACACATAGCcatacaacagcagcagcagcagcagcaacaacaacagcatccacatacacatgcacacgcacatcaacatcagcatccACAACATCCACAACATCCACACGCCAAGCTGCTGCGTCGCAGTCGCTCGCGCAGTCGCAGCCGCAGTCCGACGCCCGACGGCACACAGGATTACGATGTGACGCGCATGCGAGAGCAGGAATTTGAGCGACTAGCGGTTTATTTGGTGCCCGATGTTCAAGCCGAACGCGGGCTGCCAAATCGAGCGGATAAAACGCTGCCGCGCAGCCTGACGCTCAAATCCTCAATGGTCTACTCCACGCCAAATGTTAAGACTGAAGGAGTTTGGAGCAGCGGCGTGATACCGCGCGGCACGCGCTTTGGCCCCTTTGAAGGCATTCCAACCTCCAACTATCCAAATGATAAGAATAAGGCGCGCTATTTCTGGCGGGTGCAGGGAACACGCCACATAACCTACGGGAATATTAAGATCTTCAAGGACGATGATTACTATTATCTGGATGGCTCGGATCGCTCGCAGTCAAATTGGATGCGCTATGTCGCCTCCGCGTACAGTCTGCAGGTGATGAATTTAGTTGCGTGCCAACATGAGGAGAACATTTATTTCTACACCACCCGCGATATTCTGCCCAACGAGGAGCTGATGGTCTGGTACTGCAAGGACTTTGCCAGCCGCCTTGGCTATGATGTCGACCCGGAGCGTACTATTTTCGGTGGCAGTGTCGATgtcgaggaggaggaagaggaggaggaggcggatgGCACGGAGGTAGAGACGGGGCCGGTTGAGAAGAAGGGACTGTATGCAATGGCTGCACCAGAGATTCCAGCCGAGGTGGCTGTGAGTCACATAACCTATGTGATGGGTTTGCATTTACCTGGCCAGGCAGCGTCAGCTGCTCCGCCTGCGCCCGCCTCTGCTCCCACTGCTCCCGTGAGCTCCTCCTCcgcccatcatcatcatcattcgcATCACTCGCTGTCCCATCCGCACATCCAGCATTCGCGGCATGCCTCGGTCATCATTGAGACGGCGGGCTCGCCGCTCTGCGGCAAGGACAATCCCTATCCGCAGGACGGCAGCGTCAGATCCGTGCGCTCGGACGAGGGCTATCACAGCAACGAGTGCCAGGAGGACGGACTCACGCCGCCGGAGGATTCCAGCGACAGCGAGAGCGAGCACAACTATGTTCTCGACTGCTCCAAGAAGGCCATAGCGCCCAAGGAGACGGTCATCGCACAGACACAGAAGTCGGTCACGCCCCCCATGGCGCCCACCACGCCCATCGCGACCACGCCCAGCTCGGAGGCGGACAAGAACGAGTATCGCAAGTTCAAGGTGAAGATGCCGCTGAAGTACGAGTTTAAGCACAAGGCGGCGGCGTGTGTCAAACAGGATGTGGAGGAAGTGCAGCAGCTGCCAACTGGCGGATCTCTGGAGGATCCGGAGCTGCCCGAGGAGCTGCCGGAGGAGGCGACCACGACAACAACGCTGGGCGAGGAGGCAGCTCCtcccacatccacatccacatccacccATCAAGTGGAGGCGACCAACTCACAGCCCGCCAGCTCCACGGTGATTGTCCTGGAGCCCACCAGGACTATAGTGCCCTTGAGCAAACCCTACTACGAGTCCGATCCCAGTCCCATTGCCATGTCGGGTGAACGTTACGTGCGCTTCAATCAGCCCAGTTCGAGCATTCTGGAGACGATCCTCACCAGTCAGCACCATCATCGCTTGGAGGCGGCGTGTCGTCAGGCCAATGCGGCCACGCCCCCGCCCTCGTCGCCCACGGAGATGGCGTACAGTTACAAAAAGAGCCAGCGATATGGCAACGCCGTCAGCCCGGATTCCAGCTCGAATTTGGGCCAATCCCAGGAGTTGCCACCACAAATTGTGGGCGGCGTGGGGGCTGAGGAACTGGCGCTGGCCAGGATCAAGGGCGAGTGTTCACCGCCGCCGCCCGCTGCAGtgcatcaacatcatcatcaccatcatcatctgGGTCATCATCATGTGATCTACTCGCCGGGTCAGCACTCGCCGGGCTATGTGGGCGGCGGGGGCGGGGGCGGAGGTATGGGGGAGGGGGTTACCCCATCCACGGGCAGCTCGGGCGGCGGATCCTCCTCCAATCTGCATCTGCTGCAGAGCAGCACACAAATGCTGAACCATCCGTTGATGCAGCCGTTGACGCCACTGCAGCGACTGTCCCCCTTGAGGATTTCCCCGCCCAGTTCCCTGTCGCCCGATGGCAATTCGTGTCCGCGCAGCGGAAGTCCCTTGAGTCCCAATTCCCTCGCCTCCCGCGGCTATCGCTCGCTGCCCTATCCGCTGAAGAAGAAGGACGGCAAGATGCACTACGAGTGCAACGTATGCTGCAAGACTTTTGGGCAGCTGAGCAACCTCAAGGTCCATCTGCGCACGCATTCCGGCGAGCGGCCCTTCAAGTGCAACGTGTGCACCAAGAGCTTCACCCAGCTGGCCCACCTTCAGAAGCATCATCTGGTGCACACGGGCGAGAAGCCGCATCAGTGCGACATCTGCAAGAAGCGCTTCTCCAGCACCTCCAACCTGAAGACGCATCTGCGGCTGCACAGTGGCCAGAAGCCATATGCCTGTGATCTCTGCCCCCAGAAGTTCACGCAGTTCGTGCACCTCAAGCTGCACAAGCGACTCCACACCAATGATCGGCCCTATGTCTGCCAGGGCTGCGACAAGAAGTACATCAGCGCCTCGGGGCTGCGCACGCACTGGAAGACCACCAGCTGCAAGCCCAACAACCTCGAGGAGGAGCTCGCCATGGCGGCAGCTGCCACGTCCGAGTGTCTAGACAAGGACTTACCGGAGCCGGACTCGCGTGAGGCATTCgagcagttgcagcaacacATGCAACATCCGGTGCATCCGAGTTTGCGGCATTTGGCGGGCGGACAGTCGCCGCCACGTCTCATACCCCTGGGCGGCAACATGCAcatgcaacagctgcaacaacagcagcagcagcaacagcaacagcaacatgcaacatcaCATTTGTTGCACTCGCCACATGGAGGACACGGGGGACACGGAGGTCCGCCGATGCTGCTGACCACCGCCAATCAGTTGCCACCGCCCACAACGCCACACcacatgcaacaacagcagcaacaacaacagcaacatcagcaacagcagcaacagttgccgccACATCAACATCATTTGACGCAACATTCGCCCAAGTCGCTGAAGCCGCTGCAAGACTCGTacttgccacatgtggcacaTGTGGTGCAGACGCAGGAGAATCGACCCTCAGTCATTGAGTCCTCCAATCAGCCCATGATCATTGAGTGCACGTAA
Protein Sequence: MHGHHQHPQQQQQQQQQQVQPAPIAMKSTTSGNTQSTHIAIQQQQQQQQQQQHPHTHAHAHQHQHPQHPQHPHAKLLRRSRSRSRSRSPTPDGTQDYDVTRMREQEFERLAVYLVPDVQAERGLPNRADKTLPRSLTLKSSMVYSTPNVKTEGVWSSGVIPRGTRFGPFEGIPTSNYPNDKNKARYFWRVQGTRHITYGNIKIFKDDDYYYLDGSDRSQSNWMRYVASAYSLQVMNLVACQHEENIYFYTTRDILPNEELMVWYCKDFASRLGYDVDPERTIFGGSVDVEEEEEEEEADGTEVETGPVEKKGLYAMAAPEIPAEVAVSHITYVMGLHLPGQAASAAPPAPASAPTAPVSSSSAHHHHHSHHSLSHPHIQHSRHASVIIETAGSPLCGKDNPYPQDGSVRSVRSDEGYHSNECQEDGLTPPEDSSDSESEHNYVLDCSKKAIAPKETVIAQTQKSVTPPMAPTTPIATTPSSEADKNEYRKFKVKMPLKYEFKHKAAACVKQDVEEVQQLPTGGSLEDPELPEELPEEATTTTTLGEEAAPPTSTSTSTHQVEATNSQPASSTVIVLEPTRTIVPLSKPYYESDPSPIAMSGERYVRFNQPSSSILETILTSQHHHRLEAACRQANAATPPPSSPTEMAYSYKKSQRYGNAVSPDSSSNLGQSQELPPQIVGGVGAEELALARIKGECSPPPPAAVHQHHHHHHHLGHHHVIYSPGQHSPGYVGGGGGGGGMGEGVTPSTGSSGGGSSSNLHLLQSSTQMLNHPLMQPLTPLQRLSPLRISPPSSLSPDGNSCPRSGSPLSPNSLASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNLEEELAMAAAATSECLDKDLPEPDSREAFEQLQQHMQHPVHPSLRHLAGGQSPPRLIPLGGNMHMQQLQQQQQQQQQQQHATSHLLHSPHGGHGGHGGPPMLLTTANQLPPPTTPHHMQQQQQQQQQHQQQQQQLPPHQHHLTQHSPKSLKPLQDSYLPHVAHVVQTQENRPSVIESSNQPMIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00586246;
90% Identity: iTF_00602132;
80% Identity: -