Basic Information

Insect: Drosophila quinaria
Gene Symbol: -
Assembly: GCA_035047525.1
Location: JAWNPO010000415.1:2996372-2998052[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 9.6 7.6e+02 1.3 0.4 3 23 37 59 35 59 0.87

2 8 0.92 73 4.5 0.3 2 21 120 139 120 142 0.73

3 8 4.7e-06 0.00038 21.1 3.0 1 23 158 181 158 181 0.98

4 8 9.2e-05 0.0074 17.1 2.0 2 23 281 302 280 302 0.96

5 8 0.022 1.8 9.6 6.0 1 23 308 330 308 330 0.98

6 8 1.1e-05 0.00091 19.9 1.7 1 23 336 358 336 358 0.96

7 8 1.9e-06 0.00015 22.3 3.0 1 23 364 386 364 386 0.99

8 8 0.00016 0.013 16.3 5.4 1 20 392 411 392 413 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	9.6	7.6e+02	1.3	0.4	3	23	37	59	35	59	0.87
2	8	0.92	73	4.5	0.3	2	21	120	139	120	142	0.73
3	8	4.7e-06	0.00038	21.1	3.0	1	23	158	181	158	181	0.98
4	8	9.2e-05	0.0074	17.1	2.0	2	23	281	302	280	302	0.96
5	8	0.022	1.8	9.6	6.0	1	23	308	330	308	330	0.98
6	8	1.1e-05	0.00091	19.9	1.7	1	23	336	358	336	358	0.96
7	8	1.9e-06	0.00015	22.3	3.0	1	23	364	386	364	386	0.99
8	8	0.00016	0.013	16.3	5.4	1	20	392	411	392	413	0.95

Sequence Information

Coding Sequence: ATGTGCTCCACGTCATCAGTGCTGTGTCCACTGTGCGCGGTGCCCAGTTTCAATAGCATCGATGCCCTCCAGCAGCGGCTGATCAAGGCGGCCAATGGACCGCTGGCCTGTCCCTTTCCCCACTGCAAGGAGCTCTTCCTGGGCTTGGATAAGTTGACGATTCATCTGTTTAGTCACACCAGCCTGATGAACACTTCGGAAACAGTTCCAAAAGTAGGAACTCCACCTccaccagcagcaactgttgctccaGCACCTCCGCCAACTGCAGCCTCCaagaggcgtggcaaaaaGTCACGTGCCAAGCCTGTGGAGCAACCGATAGTTGTGGCCATACCACCAGCTACTCCTCCGGCCAGATGCGAGATCTGTGAGTTTAACTTTCGCAACGATGAACTGCGCGACATTCACTTCCGTCTGGTGCACGAGAACGGCGAGGGcacggagcagcagcagcagcagccggagCCCTACAAGTGTCATCTGTGCTCCAAGACGTTTCGCATGAAGGGTTCGCTGCGTGTGCATCTCAAGGTGCTGCACACAATtggctgcagcagcagcaacagcaacgggagcagcagcaacatgggcactggcaatggcaacggcagcaTCATCAATGCCACGCCCAAGATAAGCATTTGCGATCGCATCCGACACAAGGAGGCAaccagctccaactccaatgGCAATGTGAATACAccgagcagcaacaacaacaacaacaacactcaaCCTTATGCTCTAAGTGGCGCCATTTCCATGCTCAAACAGGAGCTGACAACTTCGTCGGATGCGACGCCCACATCCGAGTACGGCAGCACGCCCAAGAACTGGGAGTGCGATGTCTGCTCGAAGCTGTTCACAACCAAATACTTTCTGAAGAAGCACAAGCGTTTGCACACCGGCGAGATGCCGTACACGTGCCAGTTCTGTGCCCGCACCTTCACCTTCCAGCAGTCCTACCACAAGCATTTACTCTACCACAGCGAGGTGAAGCCACATGCCTGCGGCATCTGTGGACGCGCCTTCAAGGAGCTGTCTACCCTGCACAATCATCAGCGCATCCATAGCGGCGAGAAGCCCTTCAAGTGCGAGGTCTGCGGTAAATGTTTCCGACAACGCGTCTCCTTTCTGGTGCACACTCGCATCCACACCGGAGTGATGCCCTACAAGTGTGATCACTGCCAGAAGACATTTCGGTACAAGGTCTCCCTGCGCACCCACAAATGCGCCGTCGGCGCGGATGAGTCGCAGCAGACGGCGGAGCAGTTGATCAAGGCCCTGTTGGAATCCAATGCGGTGGACACAGTGGACACTGTTCCAACTTCGGCTGCTTCTCTGGCCAGCACAGCGCTTGTCGGGGGCGGGGATCAGGAGGCGTTGCTGTCACAGACCATTGATGACATTGTCGTCGAGAGCTGTCAGAAACTGGGCATTTGTGGTGTGGAACCGCCACAGTCGCAGCCTGGAATCATGGACAACCATGTGCACTTCGATGGCAGCAACTCGCCGTTGCAGCAAATGCAGAATCTCCGTCTATACTCGCCGCAGCAGACAGATCAGCCCAGCTCGGATGGTGAACTCTTTCGGCGCTTTCTAATGGACGCCACGTGA
Protein Sequence: MCSTSSVLCPLCAVPSFNSIDALQQRLIKAANGPLACPFPHCKELFLGLDKLTIHLFSHTSLMNTSETVPKVGTPPPPAATVAPAPPPTAASKRRGKKSRAKPVEQPIVVAIPPATPPARCEICEFNFRNDELRDIHFRLVHENGEGTEQQQQQPEPYKCHLCSKTFRMKGSLRVHLKVLHTIGCSSSNSNGSSSNMGTGNGNGSIINATPKISICDRIRHKEATSSNSNGNVNTPSSNNNNNNTQPYALSGAISMLKQELTTSSDATPTSEYGSTPKNWECDVCSKLFTTKYFLKKHKRLHTGEMPYTCQFCARTFTFQQSYHKHLLYHSEVKPHACGICGRAFKELSTLHNHQRIHSGEKPFKCEVCGKCFRQRVSFLVHTRIHTGVMPYKCDHCQKTFRYKVSLRTHKCAVGADESQQTAEQLIKALLESNAVDTVDTVPTSAASLASTALVGGGDQEALLSQTIDDIVVESCQKLGICGVEPPQSQPGIMDNHVHFDGSNSPLQQMQNLRLYSPQQTDQPSSDGELFRRFLMDAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00529084;
90% Identity: -
80% Identity: -