Basic Information

Insect: Drosophila quinaria
Gene Symbol: -
Assembly: GCA_035047525.1
Location: JAWNPO010000471.1:3646361-3648474[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0014 0.11 13.3 0.4 2 23 390 412 389 412 0.94

2 7 0.29 23 6.1 7.3 1 23 420 443 420 443 0.96

3 7 4e-07 3.2e-05 24.5 1.7 1 23 448 470 448 470 0.98

4 7 6e-05 0.0048 17.6 0.5 1 23 479 502 479 502 0.91

5 7 0.00059 0.047 14.5 1.0 1 23 508 530 508 530 0.97

6 7 3.8e-05 0.003 18.3 0.7 2 23 537 558 536 558 0.96

7 7 0.00057 0.046 14.6 0.7 2 23 564 586 563 586 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0014	0.11	13.3	0.4	2	23	390	412	389	412	0.94
2	7	0.29	23	6.1	7.3	1	23	420	443	420	443	0.96
3	7	4e-07	3.2e-05	24.5	1.7	1	23	448	470	448	470	0.98
4	7	6e-05	0.0048	17.6	0.5	1	23	479	502	479	502	0.91
5	7	0.00059	0.047	14.5	1.0	1	23	508	530	508	530	0.97
6	7	3.8e-05	0.003	18.3	0.7	2	23	537	558	536	558	0.96
7	7	0.00057	0.046	14.6	0.7	2	23	564	586	563	586	0.96

Sequence Information

Coding Sequence: ATGGTGATTTGTGGAACTCTCCTCATGCGCAACAACTATAAAGAGTTCTTTCTAAGCTGCTCGACATGCCAAATCGATTGCGACGTGGAGGTTAATATTGAAAGATGGCAGGAATTCGTCTTGCATATTAGAAACGTGCACAAAGTGGGATTTGATGATGACAATATGTCCTGCGGTAGCAGCATCGAATTCAAATCAGAGCCACttcaaaattataacaataGCGATGCCGAAATTAACAATGATGAGGATGgggacgatgatgatgatgatgctgacgATAATAAGGATTGCTTAGCCGAAGCAGCATTTGTTGATTTGCCGAGCGCGCCGAGTGACGAAGATGACGGTGACAGTGATAGCGACTACGACCACGATGATGAGatAATGGCAGTGTCATGCCAAATGGATGATATTACACCAACTGAAAGGGAAAGCGACAAAAAGAACTTTACGCCAACCGCAAAAtttaatCCGACGTTTTACCGGCGTAATCCACGAATCACACAATTTATTGAGCTGTACAAGGGACATCCGTGCCTCTGGGATCCCAATAACTCTTCGTATAAGAACAAGGAGAAGCGCAGTGCTGCCTACATGACAATGATAGATCAGCTAAAAAGCAGAATAAATGTTCACCTCACCCATTATAAGCTAAAGAAATGCATAGCTAATCTTCATAGTCAATACGCGGTCATAACTCGTCAAAAGCGTACGAAGAAATTGACAAAATTACCCCTGTATTATCACGAAATGTATAGTTTCCTTGGGAAACGCTGTGATGTCGATGATGCGGAAAGTGATGAGGAGAGCGgtgataataaaattaagTTGACTTTCGGGGAAACGAACCACCTGACAACGTTCTTCATAGAGCTATATTCCAAGTTTCCTCAATTGTATGATCCAACGCATGAGGATTTCTCCAATCTTACTGCACGAAAAGCGGCCTATATTGAAATGACTGACTTGCTCACCAAGGAAATTCCACTGGGCATCATTACGCACTATGATGTTTATGACAGTGTGCTCTACTTGCGACAATGGTATTCTAGAAAGATCAAAGGTCTGACGGAGACTCAAACTATCGGATTATTAAAAGCGGAAAAGCGTTATATTGAGACATGCAAGAGCTTCCTGAGAACAAAAACATTCCGTCAGAAAATTCCATGTGACGTTTGTCAGAATAGCTTCAGCACGGATCACGCACTGCAAGCCCATCAGTTCCGAGCTCACAAGATCGCCGATGGTGGTTGGTTCAAGTGTGCTCTCTGTGAGAATCATTTTGAGCGGCGCTGCCATTTACAGCAACATAACCAGCGTGTCCACATGGGCAAGACCTTCAACTGCAGCTTATGTGATCggagtttttcattttcaagcCAATTGAACGGGCATATGCGCACTCACGACGAAGCGCACATTGCTAAGCCATTTGTTTGCGAGTTCTGTGGCAAATCCTTTAAGCAAAAGATTCAAATGAGCAACCATGTGACTGCTGTACATACCAAAATTCGAGCCTTCAAGTGCACCATGTGCCCCAAGGACTTTCTAACGAAACGAGATCTCAAGGACCATGTAAAGGCGCACCTTAACATCCGCGATAAAGTATGCGAAATCTGCCAAAAGGCTTTTACAAACGCCAATGCACTTGTCAAGCACCGTCACATACATCGAGAGAAGACGTTACAGTGCAGCCTGTGCAATACCAAGTTTTCCGAGCGCGTAAGTCTGGGTGTTCATATGAAGCGTACGcataaaattattagaaataaCACCAAAGTACCGGAGGCAACAGAAACTGCATTGAATTCTCAAACATTCCCAAAAACAGaagatatttcaaataaataa
Protein Sequence: MVICGTLLMRNNYKEFFLSCSTCQIDCDVEVNIERWQEFVLHIRNVHKVGFDDDNMSCGSSIEFKSEPLQNYNNSDAEINNDEDGDDDDDDADDNKDCLAEAAFVDLPSAPSDEDDGDSDSDYDHDDEIMAVSCQMDDITPTERESDKKNFTPTAKFNPTFYRRNPRITQFIELYKGHPCLWDPNNSSYKNKEKRSAAYMTMIDQLKSRINVHLTHYKLKKCIANLHSQYAVITRQKRTKKLTKLPLYYHEMYSFLGKRCDVDDAESDEESGDNKIKLTFGETNHLTTFFIELYSKFPQLYDPTHEDFSNLTARKAAYIEMTDLLTKEIPLGIITHYDVYDSVLYLRQWYSRKIKGLTETQTIGLLKAEKRYIETCKSFLRTKTFRQKIPCDVCQNSFSTDHALQAHQFRAHKIADGGWFKCALCENHFERRCHLQQHNQRVHMGKTFNCSLCDRSFSFSSQLNGHMRTHDEAHIAKPFVCEFCGKSFKQKIQMSNHVTAVHTKIRAFKCTMCPKDFLTKRDLKDHVKAHLNIRDKVCEICQKAFTNANALVKHRHIHREKTLQCSLCNTKFSERVSLGVHMKRTHKIIRNNTKVPEATETALNSQTFPKTEDISNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00583949;
90% Identity: iTF_00586198;
80% Identity: -