Dqud014640.1
Basic Information
- Insect
- Drosophila quadrilineata
- Gene Symbol
- -
- Assembly
- GCA_018150725.1
- Location
- JAECWN010000375.1:3014394-3018275[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00052 0.031 14.6 0.0 1 23 170 193 170 193 0.94 2 13 0.0065 0.38 11.2 3.4 2 23 242 264 238 264 0.90 3 13 0.053 3.1 8.3 1.3 1 23 355 378 355 378 0.93 4 13 0.0081 0.48 10.9 1.8 2 23 427 449 426 449 0.96 5 13 0.0035 0.21 12.0 0.5 1 23 520 543 520 543 0.88 6 13 2.4 1.4e+02 3.1 0.0 2 14 562 574 561 578 0.82 7 13 0.00075 0.044 14.1 3.3 2 23 594 616 594 616 0.96 8 13 0.0028 0.17 12.3 0.1 1 23 701 724 701 724 0.95 9 13 0.00042 0.025 14.9 0.2 1 23 785 808 785 808 0.93 10 13 0.0013 0.074 13.4 2.2 2 23 858 880 857 880 0.97 11 13 0.014 0.84 10.1 3.4 1 23 965 987 965 988 0.94 12 13 0.014 0.81 10.1 1.0 1 21 1040 1060 1040 1061 0.95 13 13 9.7 5.7e+02 1.2 0.0 2 14 1103 1115 1102 1127 0.74
Sequence Information
- Coding Sequence
- ATGGAAGGAATGGATTTATGGACGTCGATGTTTTCGTCTGATTTTGATGAAGGCGACATCGTTGATGGGGAGGGAGAAAATTTCAACAAAGCGAACAACACACACACAGATGAGTATTTTGAAGAGGATGAGAACGAGCCCGATATTGATGATGCTGATGAAGCTTATGAGGAGAGTGAGGGTGACGAAAAAAGAAATCATGTGCGCAAAAAGCAAAAAGGACTTGAACCAGATGACGATACCATATTTGATTTCGAATTGGAGCCAATTAACATTGCAGAACAAGATGCTGAGCTTGGACGCAGAGGAAATATCACAAAGTCACCATCGATGCCAGTTGCAACATCTGCTCGAGGCACACACCGCCATTCATTGCCAGCAACATTTGGCTCGTCGGTAATGCCGCGAGGAGCTGGAGTGGGAGCATCCTCATCGGGTCCAACCACATCACAGATCAATGCAACCGATCAGAATGGACTGCACATCAATTATGAGCTGGGTGTGGTTTACATCTGCCCGGCATGTGGTGCCGAGTTTCGGCAGCAGGACCTGTGGAAGCGTCACTTGAACGACATCCATCAGTACAACACACGCAAGGGACTCAATTTCGTGGCCATTGACAAGCTGTATCATCGCTGTCTGGAGTGCAACAAGCGCATTGCCATGCATAGCCGAGAGAATCTATTGAAGCACAAGTTTACCCATTTGCCATTTCGATGCACCAAGTGCTATCTATGTAAGAGAGAGTACAAATACAGGCAGGACCTGATGGTGCATCTTCGTATGGTGCACTGTGACGAGGTGGGGGCCATGATGCGGGACAGTGACGGCACTGCCGGTCGCAAGACCCGTGTACGCGAACCACGCACCGAGCGTCAATTTCCTCGAGCTTCATCCGTCGATAATAATGAACTTGATACCATGGAAGTGAAGGAAAATCAGGCAGCGGAGACTGAGCCCAGTCCTTGTGCAGATGCAGTCACATTGGATGACGAACCGTTGCTGAAGCGCAAACGTGGTAAACCCAATCCAGCGGCAGATATTTGCGAGGATTACATACACTATATGTGCCCGGATTGCAACACCGATTGTGACAATCACGCACAGTGGAGCCAGCATATTGAGTTCGTGCATGACTATGTCAGCAGGCGAGGATTGAACTTTCGCTGCGTGGATATGCAAATGCAGTGTCTCGAGTGTGAACAGATTGTTATTCCCAATACCATCAAAAGATTGCGTGCCCACAAGTTTAGCCATTTGTCGCAGCCGGAATGGATGCGCTGCAAGTTATGTTACAAGGGTTATTCCGTGCATTACGAACTAGTTAGGCATCTCCTGAAGCAGCATAACCTGGAAACGCTGCTGCCCGATGATGAGGAGATGGATGAGTCGATAATTACAGCTGGTGCCACCGCCACCGCCACCGATAATGCCATTGATGATGCTGATGACGAAACTGTTGCCAATGGTTACAATGAGGATTCGTCTAACTGGGATGATGCTCCTCGGCGTGGTGGTCGTGTTAGCAGCGATCATATGTTCGAGCCGCATATTGACTACCTTTGCCCACAATGCGGTAGAGAATTCATCGAGAAGAAACACTGGCGCACTCATGTTGTACAGGTGCACGGCATGAACGATCTCGCGAAGCTGAACTTTGAGATTGTCAACGACAGACAGCTGAAGTGCACCGAATGCGACAAGATCATCACGAACGCGTATGGCATACAGAATGCCCAACAACATCACATAACTCATTTGCCCTTCAAGGCTTATGCGCGTTGCCGGAAGTGCCACAAATCCTATACAGATCGCAAGGGATTGGTTAAACACTTGGCCACATACCATCGAGTGGGCTACGAGCCACGCAAATCTGGCAGCGGCGGAGTTTCAACTAAGATGCAGACTCCGCGTAAACAGTTGGTGACAGTGGGCAATGACACCTATGAGATTACCTATTTGGATGAAGAGGATCCATGTGTCATTAACGAAGAGAACGACTTCGGTGAGCAAATGCAGGGAGATGACGATGACCTCATTATAAGCACCAATAGTCGAGAGTTGGCAGCTCCATCTGCTCTCAGTTCTAATCCCAATCGCTACAAGTGCGTTGATTGTGGCTCCCTCTTCCCTACACAAATCGCTCTCAAAACGCACATCAGCGAGGAGCACGACTTTATGGATTCCCAATACAGTGCCAAAAGGTTTGACAAAGCCGAACCCACTGATGACAAAGTTGTACCTAAAGCGGTGGCTTCCGTATCACCACCAACCACAAGTGGCAGTAGTAGCAGTAAGCAAGCAGTTCCGCTCAACAGCTCTGGATCCTCCACTGTTGAACAGAACTATATATTCTTGTGTCCGTCGTGCGGCACTTCCTACAACACGCAGTTCGAGTGGCGTCGTCATATAAATGAAGCCCACAACTTCGATAAGCGTCTATACCTGAACATGCGCCAGTTGGACAAGCACCGTTATCAGTGTACCCAGTGTAAGGATATTGTGTGCAATTCGAAGTTGAAAGGTCTGCAGGATCATCATTTCCGTCACCTGCCATTCCGGTTGTATCTAAAGTGCCTTGTCTGTGGCACTTGCTACAACCACAAGCCCAACATTGCGGCTCATCTGCGTACGCGCCACAATATTTTTGAGAAGGACACGCGATGGCGTGAGTTGCCGGCAAAGCCCACCAAGTTCACCCAGTACAGTGCAGCCAATAAGAATATGGAGAAGAGAGAGAGATCAGCATCCCCATTGCCCTCTAGCAGTGGCGTCGTGCCAGGACGTACCTTGAAGCCGCAGCCAGGAATTTTGGCCACTAGACCCCCTGGTTTGAATACTTTAGAGGATAGCATATCCTATCATAATGCTGTGGATCTGGATTTCATAACTTATTATTGCCCCAAGTGCAACCAAAACTTTGACTCGCATGCATTCTGGCGCAAACATATTGTCGAGCACCACAATTATAATAGCCGTCAGGGTCTGAATTTTCGGCAGATTGATAACCATCATTATTTGTGCCTAGAGTGCTATAAGCGAGTTACTGTCACTCACACAAAGGGTGCCATCGGTCAGTTGCAATCGCACAAGTTCAGACACTTACCTTACCGATCCTTCAAGTGCTTGACCTGCGGCGGTGAATTCGTGCGCAAGCAGATGTTTTTCAAGCACTTGAATCGGGACACCAATCGTTGCGATAACAAGCCACTGGCTGGCCAAGATAATGAGGATGATGTTGTGATGGAGCAGCCAAATGCTGGTGGAGAAGTTGCGGCAACAGACGATGTTGCGGCGTACAGATTGATGTGCCCACAATGTGGCGATATTTTCATTACAAGCAGCCGAACGGCATGGAGCGAGCACGTTAACGTATACCATGGGTTAGGGAAGCTGGAGGCTTTGCATCTGCGTAAGTTTGGAGAAGATCTGTATCGCTGCATTGATTGCGATGAACAGCTGCAAACGAAGCAGTTGCGAGTCCTGCAACATCATCGTTTCAAGCATATGCCCCATGGGGACTACGTACGCTGCCAACTGTGTGAGGATCGGGATGACGGTGGAAAGAATCATTTAAAGGCTGCAGCTGGACTGCAGAGCATGCGAGAGTTGCGGAAACATCTTCGTGAACAGCATCCTGAATTGGCGGAAAATGATGATGTTATGCAATCACTGCACGAGGAGGAGGACAAGGAAGTCGTAGATGCTTCGTTGCCAAACAGCGAATGCGGCAAGGCGCGTTATGTGCCATTGCCACCACATCTGCTTGACGACGAAGGAGCAGACGATGGAATGGAATTTGAAGATCAGTATCTGCTGGGCTAA
- Protein Sequence
- MEGMDLWTSMFSSDFDEGDIVDGEGENFNKANNTHTDEYFEEDENEPDIDDADEAYEESEGDEKRNHVRKKQKGLEPDDDTIFDFELEPINIAEQDAELGRRGNITKSPSMPVATSARGTHRHSLPATFGSSVMPRGAGVGASSSGPTTSQINATDQNGLHINYELGVVYICPACGAEFRQQDLWKRHLNDIHQYNTRKGLNFVAIDKLYHRCLECNKRIAMHSRENLLKHKFTHLPFRCTKCYLCKREYKYRQDLMVHLRMVHCDEVGAMMRDSDGTAGRKTRVREPRTERQFPRASSVDNNELDTMEVKENQAAETEPSPCADAVTLDDEPLLKRKRGKPNPAADICEDYIHYMCPDCNTDCDNHAQWSQHIEFVHDYVSRRGLNFRCVDMQMQCLECEQIVIPNTIKRLRAHKFSHLSQPEWMRCKLCYKGYSVHYELVRHLLKQHNLETLLPDDEEMDESIITAGATATATDNAIDDADDETVANGYNEDSSNWDDAPRRGGRVSSDHMFEPHIDYLCPQCGREFIEKKHWRTHVVQVHGMNDLAKLNFEIVNDRQLKCTECDKIITNAYGIQNAQQHHITHLPFKAYARCRKCHKSYTDRKGLVKHLATYHRVGYEPRKSGSGGVSTKMQTPRKQLVTVGNDTYEITYLDEEDPCVINEENDFGEQMQGDDDDLIISTNSRELAAPSALSSNPNRYKCVDCGSLFPTQIALKTHISEEHDFMDSQYSAKRFDKAEPTDDKVVPKAVASVSPPTTSGSSSSKQAVPLNSSGSSTVEQNYIFLCPSCGTSYNTQFEWRRHINEAHNFDKRLYLNMRQLDKHRYQCTQCKDIVCNSKLKGLQDHHFRHLPFRLYLKCLVCGTCYNHKPNIAAHLRTRHNIFEKDTRWRELPAKPTKFTQYSAANKNMEKRERSASPLPSSSGVVPGRTLKPQPGILATRPPGLNTLEDSISYHNAVDLDFITYYCPKCNQNFDSHAFWRKHIVEHHNYNSRQGLNFRQIDNHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCGGEFVRKQMFFKHLNRDTNRCDNKPLAGQDNEDDVVMEQPNAGGEVAATDDVAAYRLMCPQCGDIFITSSRTAWSEHVNVYHGLGKLEALHLRKFGEDLYRCIDCDEQLQTKQLRVLQHHRFKHMPHGDYVRCQLCEDRDDGGKNHLKAAAGLQSMRELRKHLREQHPELAENDDVMQSLHEEEDKEVVDASLPNSECGKARYVPLPPHLLDDEGADDGMEFEDQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -