Dqud006365.1
Basic Information
- Insect
- Drosophila quadrilineata
- Gene Symbol
- -
- Assembly
- GCA_018150725.1
- Location
- JAECWN010000323.1:2917107-2919332[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00038 0.022 15.1 5.8 1 23 232 254 232 254 0.97 2 12 0.00053 0.031 14.6 1.9 1 23 260 285 260 285 0.93 3 12 0.15 8.9 6.9 2.3 5 23 298 317 292 317 0.94 4 12 2.3e-05 0.0014 18.9 2.8 1 23 327 349 327 349 0.96 5 12 0.0015 0.088 13.2 4.1 3 23 358 378 356 378 0.96 6 12 0.0071 0.42 11.1 0.5 1 23 384 406 384 406 0.97 7 12 0.00052 0.03 14.6 1.4 1 23 412 435 412 435 0.97 8 12 0.046 2.7 8.5 4.7 1 23 441 463 441 463 0.93 9 12 0.0003 0.018 15.4 1.7 2 23 470 491 470 491 0.97 10 12 7.3e-05 0.0043 17.3 0.9 1 23 558 581 558 581 0.96 11 12 0.00016 0.0091 16.3 1.5 1 23 587 609 587 609 0.97 12 12 1.7e-05 0.00098 19.3 5.2 1 23 615 637 615 637 0.97
Sequence Information
- Coding Sequence
- ATGGATGAAGCTTCATCCACTGCCATACACACAATGTGTCGCATATGTCTGTTAACTCTGCAAGATTCGCCTGCCTATGACCTCTTCTTAATTCCCGGTCTCGCGAAGAAGTTTTGCGTTTGCACATCCCTGAATGTGGAACAACAAGATGGTTTTCCCAGGAATCTTTGTGGCGATTGCCATGAGAAACTCAACAATTTGCATGACTTTCAAAAGCAATGCGTCGACTCGGTTGAGAAGTTTAAGGAAATGGCGCTCCACTGTTGCCAAACCAGTAAGTTTGATGTGCTGAATGTATCTGGAGGGCAGGATGCAGCAGACACCGCAATAGAGGAGGAGGATCGCATTAACTTTGACCCGCTGTTGAGTACGAAAACTGAGACCATCGAGGGCGAGCAAGATGTCTTTAAAATGATCGAAGATGTTGACAAGGATGCAGAGGAGGATGCGGTAGATGAAGCGGTGGAAGATCAATCCAATTCTGGAGAGGAAGAGGAACTGCAGTGCAGTGATTCCGATGACAGTATGCCTCTCTCCCGTTTCATAACTTCTACTAAGAAACCCAAGTCCAAATCCGAGAAAAATAACTTTGTAAACGATAATTCTAGCTCCAAGTCGGAGGAATCCGACGCAGACGATGTGGATATATCCAGTTCAAAGAAAAGATCGATCGCGGAAAGTAATCGCAACACCTTCAACTGTCATATATGTGGTCAGAAATTCAAGAAAGCTTCGCGCTTCGAGGATCACATGAAGCATCACAATAATGAGTTGCCATTCCAATGTCCAGTGGAGACTTGCAAGAAGGGCTTCACCACATCCGCCGGGCTTCGGCATCATGTGGATCACACCCACTCGGAACTGTGTGAGTTGCATCCCTGCATCATCGAAGGATGCAACAACAAATTCCCTCGCATCCGCATGCTCAAGCATCATCTGAGGAAGTTCCACCAAATCGCACAGCCCGAGATCAGATCTCATGCCTGTCCGGAATGCGATAAAGTCTTCCGTTGTCCCTCCGCCCTCAAGAAACACATGTACAAGCACACGGGCGAGGAGCTGCCCATATGCTGTAATATATGCAACAAAAGATTCCACATCAACAGCGAACTGAGAGATCATCTCTTGCGTCATGCTGGAGTCAAGAACCATGTGTGTCCCTACTGCGGAGTAGGCAAGACCACGCGACAGGAGTGGAACAAGCACATCCTCACCCATACCAGGGAGAAGCAGTTCCAATGCCCCCAGTGCGATCATGCCTCCCACAACAAACAAGCTCTGACCAATCATATAAATGTTATTCACAAGGAGATTAGGAGGTATAGCTGCCAGTACTGCGGCAAGATGTTTGGCAAGTCACATGCCTGTAAGATCCATGAGAAGCTACACACGGGAGAGGACTGTCCCGAGTGCAAGATCTGTGGCAAGAAGTTCCTATTCGAGAAGTCCTTAACGAAACATCTTCAAACCCATGAGAAGCGTAATGAGTCCAAGACCATAGAAGCTGTTGAAGTAGACGACCAGAGTGGTAGTCAGGATAAAGTGAAAAAATCACATCGGGTGAAAGTTGTCGATATGTCCCAATTGGCTGGCACCTCAGTCAATCCCATACCATCGGTATCCGTACCGTCGTGGTCACCGCAGGTCAACTTCACCAAGAAGGAGGGCCAACACATTTGCCCTGGTTGTGGTAAGGGTTTCAATCATATTGGAAATATGAAACTACACTATAAAGTAGTCCATCAGAAGATCAAAGACTTCGCCTGTCGCTACTGCCCCAAGCGGTTTGGCAAATCTCAATACCTCCAGCAGCACGAGAACACGCATACAGGAGAGAGGCCTTTTGCATGCAAAATTTGCGATAAATGTTTTAGCCACGGATCGTCCTTAAGGAAGCATACTCTGTCCCATGAGAAACCACCAAGGTTGCCAAAGAAACCAAAAACCGAAAAGAAACTCGGCGAAATGTCGTATCACAAGGCATCACAGGGTCCTAAAATAGAGCTCAATAAAGAACCAACAAAAAATTATGAGCAGTATCAGGATCCTGCCGTCGAACGGGCCGCTGCTACAGCGGAACTTATAGCTCAGCAATTAATGGAGTCAGAGGCTAAACGAAAAGCAGAAGAGAAAACTCGGGAGATCCAGGAAGCCGCCAGTGAACTTTTGCAAAAGTTGGAGCAGGCTCAAGCTGTCGAGAAAAGGCAGTACAATAGAAATATATAA
- Protein Sequence
- MDEASSTAIHTMCRICLLTLQDSPAYDLFLIPGLAKKFCVCTSLNVEQQDGFPRNLCGDCHEKLNNLHDFQKQCVDSVEKFKEMALHCCQTSKFDVLNVSGGQDAADTAIEEEDRINFDPLLSTKTETIEGEQDVFKMIEDVDKDAEEDAVDEAVEDQSNSGEEEELQCSDSDDSMPLSRFITSTKKPKSKSEKNNFVNDNSSSKSEESDADDVDISSSKKRSIAESNRNTFNCHICGQKFKKASRFEDHMKHHNNELPFQCPVETCKKGFTTSAGLRHHVDHTHSELCELHPCIIEGCNNKFPRIRMLKHHLRKFHQIAQPEIRSHACPECDKVFRCPSALKKHMYKHTGEELPICCNICNKRFHINSELRDHLLRHAGVKNHVCPYCGVGKTTRQEWNKHILTHTREKQFQCPQCDHASHNKQALTNHINVIHKEIRRYSCQYCGKMFGKSHACKIHEKLHTGEDCPECKICGKKFLFEKSLTKHLQTHEKRNESKTIEAVEVDDQSGSQDKVKKSHRVKVVDMSQLAGTSVNPIPSVSVPSWSPQVNFTKKEGQHICPGCGKGFNHIGNMKLHYKVVHQKIKDFACRYCPKRFGKSQYLQQHENTHTGERPFACKICDKCFSHGSSLRKHTLSHEKPPRLPKKPKTEKKLGEMSYHKASQGPKIELNKEPTKNYEQYQDPAVERAAATAELIAQQLMESEAKRKAEEKTREIQEAASELLQKLEQAQAVEKRQYNRNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -