Dqud007947.1
Basic Information
- Insect
- Drosophila quadrilineata
- Gene Symbol
- -
- Assembly
- GCA_018150725.1
- Location
- JAECWN010000219.1:6987896-6990948[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.093 5.4 7.5 4.0 1 23 291 313 291 313 0.97 2 11 9.9e-06 0.00058 20.0 0.3 1 23 319 341 319 341 0.99 3 11 0.00016 0.0093 16.2 3.3 1 23 347 370 347 370 0.97 4 11 0.4 24 5.5 3.8 1 20 376 395 376 398 0.95 5 11 0.0098 0.58 10.6 1.7 1 23 404 426 404 426 0.97 6 11 4.6e-05 0.0027 17.9 1.2 1 23 432 454 432 454 0.98 7 11 0.00019 0.011 16.0 1.6 1 23 462 485 462 485 0.96 8 11 0.001 0.059 13.7 0.3 2 23 492 513 491 513 0.97 9 11 0.0014 0.081 13.3 1.2 1 23 519 541 519 541 0.98 10 11 2.1e-05 0.0012 19.0 0.5 1 23 547 570 547 570 0.95 11 11 1.9e-06 0.00011 22.3 3.4 1 23 584 606 584 606 0.97
Sequence Information
- Coding Sequence
- ATGTCAAGCCGCAAGCGAGACTCCGACTCGGAGGATTTGCAATCCCTCATCATGAAGTTTCACAATGAAATCGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCACATGAAACCCAAAAACAAAAGCAAACCAAGTGTCGCCTCCAAGGGAACAGCCAAAGCATCCCAATCCTCCATTGTTGTGCGCAGCCGGAACAATGCAGCTGCCTCTAATGCCATCAATCTGCGTCCCGCCAAATCCAAGGCAGATGCAACCCCTCAAAAGTCCAGCAACAAGGAGGTGCGGCCCGTCGCCCAGAAGAGATCACCGCTGAAGGCAACAACAGCAACGGGATCAGGAGCAGGAGCAGCCACTGCCAGCACAGTTAAACCCCTTCGCTCGACAAGAGCTCGGACCAAGGCTGCCAAATCGGAGTCCAAGACTGAGACGAGAAGCGATAAGGTGGTGATAGAAACTATTGAAATGCTAGAGGAGCTGGTTGATGATCCTGGCAGTCTGACAACCGATGCCAAAGAATCCACTGTTGCTGCTGCTCCCACAAAGTCCAACGAAAGCGAAGAGGAGGAAATCTTTGAATTTGACGATGATCCCGCTAACGCCTCTGGGAATGCCGATGTGGACTTTGTGCTCTCTGGCAAGCAGTACAAGCTGAAGCCGGTCCAGCCCAATTCCTCCTCTTCGACGACGACGACGACGACGGCGACAACGTCCCATACATTCGCCTGTTCCCACTGCAGCTATACGACCAACAAGAAGTTCCTCATCTCTCGCCATGTGCGTTCCCATGATGCGGAGTTGTCCTTCAAGTGTTCGATCTGTGAGCGCGGCTTCAGGTCCAACGTGGGCCTGGTCAATCATCTCAACACGCACATGGGCAACAAGCCGCACAAGTGTAAGCTCTGCGAGAGCTCCTTCACCACCAGTGGCGAGCTCATCCGGCACACCCGCTACAAGCACACCAAGGAGAAGCCACACAAGTGCACGGAGTGCAGCTACGCCAGCGTCGAGCTGACCAAGTTGAGGCGCCACATGACCTGCCATACGGGCGAACGGCCATATCAGTGTCCACACTGCACCTACGCCTCCCAGGACATGTTCAAGCTGAAGCGCCACCTGGTGATACACACCGGCGAGAAGAAGTATCAATGCGACATTTGCAAGTCCCGCTTCACCCAATCCAACTCGCTGAAGGCGCACAAGCTCATCCATAGCGTCGTGGACAAGCCGGTGTTCCAGTGCACACTGTGTCCCACCACCTGTGGCCGCAAGACGGATCTGCGCACCCACATGGCCAACATACACACCTCGGACAAGCCCATCGTGTGCAAGCGGTGTGGCCAGGAGTTGCCCGATCGCTACCAGTACAAGCTGCACATCAAGACGCACGAGGGCGAGAAGTGCTATCGCTGCAATCTCTGTAGCTATGCGTCGGTCTCCCAGCGTCATCTGGACTCCCATATGCTCATACACACGGACACCAAACCCTTCACTTGCGACGAGTGTCCATTGGCATTCCGGCAACAGCAGCTGTTGCGTCGCCACAAGAATCTTATCCACAATGCCAACTACAAGCCACCGGAACCGCGTGAGAAGCTCCATTCCTGTCCAAGCTGCACCCGTGTATTCACCCACAAGGGTAATCTGATCAGGCACATGGAGACGCACGATGACACCATCAATGCTCGCGAGGAGAGATTCAAGCTGAAGTTAGGACGCAACGTCAGACTCCAACCGGATGGCAGCATTGTCACCGTGGTCAATGGCACCGACATCAAGAAGCTGAACAAACAGAACACATCGATAGACATCGAGGAGCCATACGAACTCACCGAGATCGAGGAGATGGACGAGTCCGAAGACAACAACATAGAGGAAGCAACCATAATCAGTTCTCCGCCACGTCTAAGGAATCGCATTCCAACGGCGGTCATGAAGAAACCTCAAGAGCGAGTGGTGTCCAGCAAACCCGTCATCATCAACAAACAGTTGAAGGTATCTCGGACACAACGTGACCTGAAATCACAAGGCGGCACATTCCGCATCAAGGAGGAACCGGAAGTGCACGATTTCACCGTGGAAATTGACGATGGCAATGATCAGATTATGGTTGTGCAGCTGGTCAACGATGACAACGCTGTCGTAGTCAAACGGGAGCCCACCACACTCAAGATCAATTCCAAAAACTGCTTTGGTTTCGAGGATGACAACGAGGCGGATTTTGAAGAATATGCAGAGCCTGTTGCCGAAGTGGATGCCACATCTCAAGAGTTTCTGCAACTGATGGATATGATTGAACATGATACGTAG
- Protein Sequence
- MSSRKRDSDSEDLQSLIMKFHNEIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHMKPKNKSKPSVASKGTAKASQSSIVVRSRNNAAASNAINLRPAKSKADATPQKSSNKEVRPVAQKRSPLKATTATGSGAGAATASTVKPLRSTRARTKAAKSESKTETRSDKVVIETIEMLEELVDDPGSLTTDAKESTVAAAPTKSNESEEEEIFEFDDDPANASGNADVDFVLSGKQYKLKPVQPNSSSSTTTTTTATTSHTFACSHCSYTTNKKFLISRHVRSHDAELSFKCSICERGFRSNVGLVNHLNTHMGNKPHKCKLCESSFTTSGELIRHTRYKHTKEKPHKCTECSYASVELTKLRRHMTCHTGERPYQCPHCTYASQDMFKLKRHLVIHTGEKKYQCDICKSRFTQSNSLKAHKLIHSVVDKPVFQCTLCPTTCGRKTDLRTHMANIHTSDKPIVCKRCGQELPDRYQYKLHIKTHEGEKCYRCNLCSYASVSQRHLDSHMLIHTDTKPFTCDECPLAFRQQQLLRRHKNLIHNANYKPPEPREKLHSCPSCTRVFTHKGNLIRHMETHDDTINAREERFKLKLGRNVRLQPDGSIVTVVNGTDIKKLNKQNTSIDIEEPYELTEIEEMDESEDNNIEEATIISSPPRLRNRIPTAVMKKPQERVVSSKPVIINKQLKVSRTQRDLKSQGGTFRIKEEPEVHDFTVEIDDGNDQIMVVQLVNDDNAVVVKREPTTLKINSKNCFGFEDDNEADFEEYAEPVAEVDATSQEFLQLMDMIEHDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -