Dqud014940.1
Basic Information
- Insect
- Drosophila quadrilineata
- Gene Symbol
- -
- Assembly
- GCA_018150725.1
- Location
- JAECWN010000375.1:6094410-6097556[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.5e-05 0.00087 19.5 4.5 1 23 166 189 166 189 0.97 2 16 0.00055 0.032 14.5 3.1 1 23 227 250 227 250 0.97 3 16 0.0024 0.14 12.5 3.3 1 23 315 338 315 338 0.96 4 16 0.0033 0.2 12.1 0.4 2 23 388 409 387 409 0.96 5 16 1.6 91 3.7 1.0 1 19 522 540 522 543 0.72 6 16 0.027 1.6 9.2 0.6 1 23 552 574 552 574 0.95 7 16 0.00059 0.034 14.5 1.3 1 23 581 604 581 604 0.94 8 16 0.00086 0.05 13.9 1.1 2 23 612 633 611 633 0.96 9 16 0.00041 0.024 15.0 0.2 2 23 660 683 659 683 0.90 10 16 0.0025 0.15 12.5 1.1 1 23 719 742 719 742 0.96 11 16 3 1.8e+02 2.8 3.6 1 22 749 770 749 770 0.95 12 16 0.016 0.93 9.9 1.7 1 23 779 801 779 802 0.95 13 16 1.7e-05 0.00097 19.3 0.5 1 23 821 844 821 844 0.97 14 16 0.26 15 6.1 0.1 1 23 854 876 854 876 0.92 15 16 2.5e-05 0.0015 18.8 3.3 1 23 882 904 882 904 0.99 16 16 5.4e-05 0.0031 17.7 0.9 1 23 910 932 910 932 0.98
Sequence Information
- Coding Sequence
- ATGAGCAAAACATGCAGAACCTGCGCTGCGACTGATGCACGCTTTTGGATTGAGACACCAATAGATAAGTATGCCGGAAAGACATTCAGTGAACTGCTGCTTGAACTAACCAGTCTAAAGTTCACGGCCGATGAAGCGGACAGACTGCCACCTTGGATATGCGGGCATTGTGCCAAGAGATTGCAGGATGCACATCATTTTGTTTTGGAAGCCCGGCAAACACATGAGATGTGGCTAAAAAAATTGACAAAATATGGACCCAGTGACGAATGTCTGGAGGAGGATCCAATACAGCTGCTAGACATTGAGGGAACTATTATTAAAACAGAGGAGCAAACCGAGTCAATCACACCATCCAGCGATCCAGTAGTTTCAATAGATCCTTTGATAAAGAGGAGCCATCAAGATCAATGCAACTATAATGATGACTTCGATGATGAGGATGATGTGCCCCTAAGACAACGACGCACTAAGAGCTCAAGAAAGCCAACGATACACAAGTGCAGTATATGCAAGAAGTCGTTCAAATACGTTACAAACCTCTTCAGGCACATCCAGAGGGATCATCCTTCCGAGCAGAGCCAGGAGCAGCAGGAGCACCAAAACTTGGCAAATAGTTCCACCCAGTCTAGACTCGGAAGTGACAAGTCAGACTTGGAAGTCGACTCGGATATCTACTACAAATGTGACCAGTGCGACAAGTCCTATAAGTACATCATGTTGCTCCTCAAGCATCAGCATAAGGCTCACGGGGTCAATCAGCTGCCGGCGGAGCCACGCCCCATATGCAGACGCAGTACATCCAATTCAGAGGCGGCACGGGCAGCATCATCGTTGCGTCAGCGATCGCAGGTGCCTCGCACAGATTCTTTGGTGCACAGCATTATCAAGGAGATTCCGACTCCCGACGACGATGCGGAAAACCCGGGAACGGACAATTACTATAAGTGCGATCAGTGCGAGAAAACATACAAGTACATTGTGAGTCTGATCAAGCACAAACACAGGGAGCACAGCAACTATAAGTCCTCCTCCGAGGAGGATGATCCTGAAGCGGCGATCCTTAAATATGCAGTGCCTGCACCAAAACCATCAAGGATCGATCGACGAGTTAAGGGATTCGATTTGCATCGATGTAAACCCAACGGATACAAGGAGATCCAATGTATGATCTGCCTCAAGAGCTTCGTCAAGATGCGCGAGCTGCGTGACCATCTTAAGGCGCATCCCGACGATTTCAGTTTCGAAACCCACGATGAGCCCATTGAGCGCATTGCCGAGGGCTTCTTCAAGACGGCGGTGGAATCTACAATCCATGGGCTTAGGAAGCGCATCATGAGTGACCTGGAGAACGGTTTGTTTGGACGTTACTACTCCATCACTAATGAGGCTCATTACGAGATGAATCTGGACAGCTCGGACACGGACAGCGATGGCGAGGAAGGTGTCGTCCAACGGCGTAGCTATGCCTGTGAGCTGTGTGATTCCCCTGAAGCCGTCTGGCCACGCAAGTACCAACTGCACGAGCATCATCGTCAGAAGCACACCTGGCTGGAGGCTCCCTACGTCTGTCCACGCTGTGACTCCCGATTTCTAAGCGCCCAGCTCCTGGATCATCATACCCATAAGCTCTGCCAGAATACCCTCAAGCGTTACACCTGCGACAAGTGTCCACAGCGGTACTTCTGGCGTAGGAATTTGCGTGCCCACTTAGCAGATCACAAGGACAAGCAAGAGACTTATCCTTGTGATCAGTGCTCGCGGAGTTTTCAGGACAAGAGTTCCGTGACCAAGCACAAGTTCATGGTGCACGATGTGAGCAACGAACTGATACCATGTCGCTGGTGCACACGTACTTTCTACCGACCTGCCCTGCTGCACAAGCATGTGAGTCGACACGGCTTCTCTGGGGAGGACATACCCTTGGCGGAAACCCTCTTGGCAGATGCTGCCAAGCCCATTGGATCCAAGAGCATTGTCTGCAAGTTATGTAACATGCGCTTTGTGAGCATTGCGGATCTGCGGCGACACATGTCGATGAGGGGGCACGGCGAAGAGGCTGCCAATTATATGATAAGCACAGAGGATGGCTTCGAGCTGCAGCTGGACGAGACAGACGATAGCGATGATGAAGGTGTGTCTGCTGTCAGGAGCTACAAGTGCGATCTCTGCCAGATGGGCTTCCAGCGAAGACGGGAGTTGAGTGAGCATCAGTATTCTATGCACAACTTTGACAAGCTGCCGCATTCCTGCACTCACTGCATCTTTAAATCCGTCGATAAGAGCGTTTTGAAGCATCATTTACGTACACAGTGCGAAAACAAGGAAAAGAAGTTCATTTGCACACGCTGTGGCTACAAATTTATGTGGCGGGAAAATCTGGATCAGCACATGGAAAGTCATCATGCCAACTCAGACAGCCAGGTGCCCGTGCCGACAAAGAGAAGCCGTCGCTTTAGGTATCAGTGTCCTCACTGCTGGCGATCGTTCGTGGTTCAACCCAGCCTGGATAAGCACATTAGGGACATGCACGTGGCGCGCAAGAATCCTGGAAAGAAATATTTATGCTCGCTCTGCGGCCTCGAGGCACTCACCCCCAACAAACTAAGCATCCATATGCGTCGTCATAATGGCGAGAAGCCATTCAAATGCGATCTCTGCGACATGTCATTCACTGTCCACTACGAGCTCAAGGTGCATCGTCGCAAGCATACGGGCGAACGACCATATCAATGTACCTTCTGTGCCAAGGACTTTGCACGTCCCGACAAGCTAAGACGGCATGTCTACATGCATAGTGTAAAGCGTTAA
- Protein Sequence
- MSKTCRTCAATDARFWIETPIDKYAGKTFSELLLELTSLKFTADEADRLPPWICGHCAKRLQDAHHFVLEARQTHEMWLKKLTKYGPSDECLEEDPIQLLDIEGTIIKTEEQTESITPSSDPVVSIDPLIKRSHQDQCNYNDDFDDEDDVPLRQRRTKSSRKPTIHKCSICKKSFKYVTNLFRHIQRDHPSEQSQEQQEHQNLANSSTQSRLGSDKSDLEVDSDIYYKCDQCDKSYKYIMLLLKHQHKAHGVNQLPAEPRPICRRSTSNSEAARAASSLRQRSQVPRTDSLVHSIIKEIPTPDDDAENPGTDNYYKCDQCEKTYKYIVSLIKHKHREHSNYKSSSEEDDPEAAILKYAVPAPKPSRIDRRVKGFDLHRCKPNGYKEIQCMICLKSFVKMRELRDHLKAHPDDFSFETHDEPIERIAEGFFKTAVESTIHGLRKRIMSDLENGLFGRYYSITNEAHYEMNLDSSDTDSDGEEGVVQRRSYACELCDSPEAVWPRKYQLHEHHRQKHTWLEAPYVCPRCDSRFLSAQLLDHHTHKLCQNTLKRYTCDKCPQRYFWRRNLRAHLADHKDKQETYPCDQCSRSFQDKSSVTKHKFMVHDVSNELIPCRWCTRTFYRPALLHKHVSRHGFSGEDIPLAETLLADAAKPIGSKSIVCKLCNMRFVSIADLRRHMSMRGHGEEAANYMISTEDGFELQLDETDDSDDEGVSAVRSYKCDLCQMGFQRRRELSEHQYSMHNFDKLPHSCTHCIFKSVDKSVLKHHLRTQCENKEKKFICTRCGYKFMWRENLDQHMESHHANSDSQVPVPTKRSRRFRYQCPHCWRSFVVQPSLDKHIRDMHVARKNPGKKYLCSLCGLEALTPNKLSIHMRRHNGEKPFKCDLCDMSFTVHYELKVHRRKHTGERPYQCTFCAKDFARPDKLRRHVYMHSVKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -