Dqud006369.1
Basic Information
- Insect
- Drosophila quadrilineata
- Gene Symbol
- -
- Assembly
- GCA_018150725.1
- Location
- JAECWN010000323.1:2933173-2935521[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.021 1.2 9.6 3.1 2 23 244 265 243 265 0.96 2 12 8.2e-05 0.0048 17.1 1.2 1 23 271 296 271 296 0.94 3 12 0.00017 0.0098 16.2 0.1 3 23 305 328 303 328 0.93 4 12 0.00028 0.016 15.5 3.6 1 23 338 360 338 360 0.96 5 12 0.001 0.06 13.7 0.1 1 23 367 389 367 389 0.96 6 12 0.0076 0.44 11.0 0.5 1 23 395 417 395 417 0.97 7 12 0.0004 0.024 15.0 2.8 1 23 423 446 423 446 0.98 8 12 0.022 1.3 9.5 1.0 3 23 454 474 453 474 0.97 9 12 5.3e-06 0.00031 20.9 2.8 2 23 481 502 481 502 0.97 10 12 5.5e-05 0.0032 17.7 0.5 1 23 584 607 584 607 0.94 11 12 0.00039 0.023 15.0 0.7 1 23 613 635 613 635 0.95 12 12 0.00028 0.016 15.5 3.5 2 23 642 664 641 664 0.95
Sequence Information
- Coding Sequence
- ATGAATGATGGAGGCAGTGTGCACTCTATTAACAAATTGTGCCGAATATGCTTAAATGTCTTGCAAGACCACCTCAACTACGATCTGTTTACGATTCCTGGTCTGGCCAAAAAACTATGTGTCTGCACTTCGCTGTCGGTGGAACCGCAGGATGGATTCCCCCCAAATTTGTGCACCCACTGTTACGACCGATTAAACGATTTGCACGAGTTCCAAAAAATGTGTGTGGACTCGGTGCAGAAATTCCAAGATATGATTGCCAAGAATTATTTTACTCCTGTCATAAATCCCGACATCAATCAAATTGACGACGTCGAATTGGATGAGGATAGAAATAGTTTTGATCCGCTCTTAAGTACGAAAATAGAAATCATTGAAAATGAAGAGGATGTCTTTAAAATGCTCGAGGATGTTGATAAAGAGACTGAGGATATTGAACAGGCTAAAGATTATTCTGCGGAAAGCGACGAGGAAGGCGACAATGATGATGACTTCCAAATCAATGACAGTGACTCAGAGGACAACTTTGCCCTGTCCTGCCTCAAGATTGGAACTCGATCAACGACTGCAAAGTCGAAGAAATCATCAGCAACAAAGGCAAACGATGATAGCGAATCTTCCAACTCGGAAACAGACTCCAATAACGATGACTCTGAAGAGCAGTCCTCAAGAGCAAAGCCCAAACGCAAACGCATCCCAGCCGCTGAACGAGATCGCCACAAGCTCATCGAGTGCCACATCTGCCAGGCCAAATTCAAAAGAGCTCTGCGATACGAGGAGCATATGAAGCATCACAACGATCTACTGCCATTCCAATGTACTGTTGAGACATGCAAAAAGGGTTTCACTACTCCCAGTGGACTACGACTTCATATGGATCATTCCCATCCGGAGCTATGTCCGATTATACCCTGCACCTTTCCAGGATGTGACAAGACATTCCCTAAAACAATCCTGCTCACAGTCCATATGAGAAAGGCTCACAACGTAGCCAAGCCCATCATACGGAGACACGCTTGTTCCGAATGCGACAAGGTATTCACATGTCCAACGGCCCTAAAGAGACATATGTATAAACACACGGGCGAAGAGCTGCCCTTCGCCTGCGAAATCTGTGGGAAACGCTTCCCCATCTACACTGTACTGAGGGATCACCTGCTGCGGCACGCGGGGATTAAGAACCATGTGTGTCCGTACTGTGGAGTGGGCAAGACGACCCGTCAGGAGTGGAATAAACACATTCTAACCCACACCAAGGAGAAACAATATCAATGCACTCAATGCGATCATGCCTCTCATAATAAACAAGCACTGACCAAACATATTCGGGTGGTTCACATGAAGATCAAGAATCATGGCTGTCAGTACTGCGGCAAGATCTTTGGCACGAGGTATGCTTGCAACATACACGAGAGACTCCACACGGGGGAGAACTGTCCCGAATGCAAGATCTGTGGCAAGAAATTCGTTCATGAGAAATCCTTGACGAAGCATTTGCAAAGTCACGAGAAAGGCGAGATTCCATTGATTAAGAATCCAACATCAAAGGCGAAAGAGCATGAGGAACAGATGAAATCTGTGACGCCAGTGGATATTAAGCCTTTGCCCTCGAAGCCGTCAAGATCTCGTGTAGAAGTTGTGGACATTTCCCAATTGGCTGGATTAACCGAAGTCAATCCCATACCAACCGTATCTGTGCCCGATTGGACGCAAGGCAATGTGACGGATTTTCCGAAAAAGGATGGCCAACATATTTGCCCAGGCTGCGGAAGAGGCTTCAACCATCTCGCAAATATGAAAATCCATTTGAAAGCTGTGCACCAGAAAATCAAGGATTTCGCCTGTCGCTTCTGCCCTAAACGGTTCGCAAGAGCCCAATACCTCCGCTCCCATGAATCTATCCATTCCGGAGAGAAACCGTGTGAGTGCAAAATATGCGGCCGACATTTCCGTCAGGATCAGTTCCTGAAAGCCCATATAATGAGAGTGCACAGCAGTCCACAAAAACCACCAAAGGAGAAAAAGCCCAAAAAACCACCTAGTAGCAAACCCAGAGAACCCAAGATTGAACTCAATAAGGAACCACCAAAGATTCACGCCGAATACCAAGATCCAGCTGCAGAACGAGCTGCTGCTACGGCTGCACTCCAAGCCCAACAGATCGAGGAGGGCGAAGCAAAGCGAAGGCAGGAGGAGAACAATCGAAAGATACAAGAGGCAGCCTACGAGCAACTCAACAGACTTCAGAAGCAGATTCAAAGCGAAAAGGGCTCCTACGACAGCTACTACGAACAGAAGGCAGATGCCGAAGGTTTAAATCCAAATGCTCTCAAATTGGATCATGTTTAA
- Protein Sequence
- MNDGGSVHSINKLCRICLNVLQDHLNYDLFTIPGLAKKLCVCTSLSVEPQDGFPPNLCTHCYDRLNDLHEFQKMCVDSVQKFQDMIAKNYFTPVINPDINQIDDVELDEDRNSFDPLLSTKIEIIENEEDVFKMLEDVDKETEDIEQAKDYSAESDEEGDNDDDFQINDSDSEDNFALSCLKIGTRSTTAKSKKSSATKANDDSESSNSETDSNNDDSEEQSSRAKPKRKRIPAAERDRHKLIECHICQAKFKRALRYEEHMKHHNDLLPFQCTVETCKKGFTTPSGLRLHMDHSHPELCPIIPCTFPGCDKTFPKTILLTVHMRKAHNVAKPIIRRHACSECDKVFTCPTALKRHMYKHTGEELPFACEICGKRFPIYTVLRDHLLRHAGIKNHVCPYCGVGKTTRQEWNKHILTHTKEKQYQCTQCDHASHNKQALTKHIRVVHMKIKNHGCQYCGKIFGTRYACNIHERLHTGENCPECKICGKKFVHEKSLTKHLQSHEKGEIPLIKNPTSKAKEHEEQMKSVTPVDIKPLPSKPSRSRVEVVDISQLAGLTEVNPIPTVSVPDWTQGNVTDFPKKDGQHICPGCGRGFNHLANMKIHLKAVHQKIKDFACRFCPKRFARAQYLRSHESIHSGEKPCECKICGRHFRQDQFLKAHIMRVHSSPQKPPKEKKPKKPPSSKPREPKIELNKEPPKIHAEYQDPAAERAAATAALQAQQIEEGEAKRRQEENNRKIQEAAYEQLNRLQKQIQSEKGSYDSYYEQKADAEGLNPNALKLDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -