Dqud000826.1
Basic Information
- Insect
- Drosophila quadrilineata
- Gene Symbol
- L
- Assembly
- GCA_018150725.1
- Location
- JAECWN010000407.1:7348212-7355942[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.1e-05 0.00067 19.8 2.9 1 23 172 194 172 194 0.98 2 17 0.39 23 5.6 6.2 1 23 200 222 200 222 0.97 3 17 1.9e-07 1.1e-05 25.4 3.2 1 23 228 250 228 250 0.99 4 17 1.4e-05 0.00082 19.6 0.4 1 23 256 278 256 278 0.99 5 17 0.024 1.4 9.4 0.2 2 23 355 379 354 379 0.93 6 17 0.0013 0.073 13.4 0.2 2 23 410 432 409 432 0.95 7 17 0.069 4.1 7.9 0.7 1 23 511 533 511 533 0.97 8 17 0.0016 0.092 13.1 0.1 2 23 541 562 540 562 0.92 9 17 9e-05 0.0053 17.0 0.1 1 23 570 595 570 595 0.94 10 17 1.1 66 4.1 0.9 2 23 631 653 630 653 0.95 11 17 0.0029 0.17 12.3 1.1 1 23 706 729 706 729 0.97 12 17 0.0018 0.11 12.9 1.8 2 23 924 946 923 946 0.96 13 17 0.13 7.5 7.1 0.1 1 23 952 974 952 974 0.92 14 17 0.37 22 5.6 0.7 2 23 982 1003 981 1003 0.95 15 17 0.83 49 4.5 0.5 2 23 1099 1120 1099 1120 0.94 16 17 0.2 12 6.5 0.0 1 23 1130 1152 1130 1152 0.95 17 17 0.0014 0.084 13.2 1.2 1 23 1157 1179 1157 1179 0.97
Sequence Information
- Coding Sequence
- ATGATGGCTTTAAAGATGTTGTATCGCGGTCCCAGTTCGCGCTTAGAAAATTTAATTGAAAAGATACAGGCCACTAAAGAGATTACAAATAACGACATGTACAGCACGCATACGTCGTCCAGCTACTCGCCGAGCATCTCGGATGGCACATTGACGCCCAACTCAACGCAGTTGGCGACGCCACACCCACTCGCAGCTGGCGAGGATCCCAGCACAGAGTCGGGTCAGGCCAATGGTGATGCAGTCAACGCTGAGGAGGAGCGGGACAGAGAGAGGGAAAGGGAGCCAAGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTAAAATCAATAAGGAGGCGAAGCTCACAGGACCCCAAAGTGGAGCTGGTGGTGTTGGTGGCGGAGGCGGACCCGGAGCTGGCACAAAGTTTGATAAGTTGACAGGCGAGAGCATTAAGAGTCGAGGCGACGGCTCCTATCAGTGTCAGTTCTGTGATAAATCATTTCCGCGTCTCGGTTACTTGAAGCATCACGTCCAGAGCCACGCGGAGCATTTGCCTTTCAAGTGCGAATATTGCGCCAAGCTCTTCAAGCACAAACGCTCCCGCGATCGCCATAAGAAGCTCCACACCAACGAGCGCAACTACAAGTGTCCACATTGTGAGGCAGCTTTCTCCAGAAGTGACCACTTGAAGATTCACATGAAGACGCACGACATTCAGAAGCCGTTCCAGTGCAGCATGTGCAACCGCGGCTACAACACGGCCGCCGCCTTGACCTCCCACATGCAGAAGCACAAGAAGAATGCGGCAATACTGGCCGCCGGTGGCAACCCCAATGCCCTCAACTACAGTCCGCGGAGCACCGGCTCCGCCTCCATCTCCAGCAATGGCAGCCTGCACAAGCGACGCTATGCGCTCGCCCTCGCCTCCGACAGCAGTCCCAGTCGCCTTGAGTATCCCAAACGTGGGCGTGGCAACCATGTGGCAACAACGACACCGCCTACACCCCCAACGCCACTACTACGTTGCAGCTACTGCCCAAAGCTGACGGAGTTTAGCAACCTGGAGCAGCTCAATGCGCATCTGCAGCAGGTGCACGAACAGCGTCAGCCTGGAGGAGCAGGTGGTGGAGGCGGAGATGGTAGCTTGGAATCTGGCGGAGCAGCCAATGGTGTTGGCTTCCAGCTGAGCTGCGAGTACTGCACCATGAGATTCGTCAACATCGCAGGACTCTTTCAGCATATGCGGGCCACGCACCTGGACAGACTGAGCAGTCCCAACTCCTACTATGAGCACTTCAATCGTCTGGCCACGGCGGGCACATTCAGTCCCAGATTGGCGCTGGATCTGCCCAAGATTAAGCCGGATCTGAGCAGTCCCGTTGCGGAGAAACCGGAGCAGGATCTGCCCACCGATTTGAGTAGCAACAAACGTCGCAGCACGCCGGCACCAGCTGCTGCTGCTCCTGCTCCCCATGCTCCTCCTGGCGTGTTCTTCTGCAACCAGTGCAACGCGGGGTTGCCGGACTTCGAGAGCTTCCGCAATCATCTGAAATCCCACATAGCCGAGGGCATGCAGCAGAGCTGCCCCCATTGCGGTATCAGTCTGCCCGAGCAGAGCGAGCTGGAGCGCCATGTGGTCGCCCACTTTCTCATCAGCAGTGCCGAGTACAATTGCAGCGCCGGCAGCTGTGGCAAATCCTTCGCCAAGGCGGATGAACTGCAGCAGCATCTCCAGAGCGACCATGTGCTCACTCTGCTCAAGTGCGCCCTCTGCTCGGAGATCTGTGAGACACGCATGGCCATGCAGCTGCATCTGGCATGTGCCCACAGCCAGGAGACGAAGCTGTTGCGTTGCAGTGCCTGCATGGAGGTCTTTCGCACGGACGCGGACTTTCATGTGCATGTGAAGACACGGCATCAGGCGCTATCGGCAGCAGCAGCTGCGCCCGGCATGGCAGGAGTAGTGGCTGCTCCGGCTGCACCGGTGGCCAATCCGCTGCAGTGCATGTTCTGTCGCGTTGTCTGCGCTTCGGAGCTGGAGATGCACTTCCATCTGGCTGCCCATGCGCGGCAGTTCCGCTGCCCCTCCTGCCCCGAAACCTTCCATGTGGAGTTCCTGCTCGACAGGCACATGCAGAGTCAGCATGGCGGTGGCAACCACAAGGATGCTCAAGGCAAGGAGCCAGCGAGCAACAACTCACCCAACATGGGCAGTCTCTATGTGAATGCGTTGCTGCCACCATTGGCGGCAGCTGCTGCCGCCGCTGCTGCAGCCACCAACAACAACAACAACAACAGCAGTTTACATATTGATTACAACGTGGCGTTCAAAGGACTCTTTGGCGGCACAGCGGGAGCAGCAGCGGCAGGAGGAGGTGGAGGAGGCGGTGTAGGAGTCACTGGTGGTGGGAACAATCCTGGCAGCAAGTTCTACAGTCCGCTCCAAGTGGATACAAGCGGCCTCAAACCACAGCAGACACCACATCCCGCATTGATGTATGGACTCAGCCAGCGGTATCTGATGGAGATGTATGCGGCCAAGGCGAACAGCTCGCCGCCAGCGCCAGATGTGCCCGGCCAGACCATAGCTGCACCCACTGGTGGCGCCAGCAGCAGCAGCGCTGGCAGCTACAGCTGTGGGATGTGCGAGCGCCAGGATCTGCGCAGCGAGGCGGAGCTGCACTCCCATCGCAAGCTGGCCCACAATCTGAAGACGGGTGTGAGTTTGAGATGCGCCTACTGCTCCGGTAACTTCAAGTCACGGGCGGAGCTGGAGCAGCACATGAAGAGCTGCCACAACTCGAGTGGCAAACACAAGTGTCTCATCTGTGACGAGATCTTCCCCTCGCCCGCCATACTCGCCGAGCACAAGCTGCAGCACTCCAAGGTGGGGCAGTCGGGGAAGTGTGCCCACTGTGGTCAGCAGCTGGAGCATGTGGCCGCCTTTCGTGCCCATCTCACCGAACATGGCGGTGATGGTAATCTGCCCATGGCCTGCATCTGCTGCCGTCAGACCCTCCACTCCGAGTTCGAGCTGAGTCTGCATGCCAAGTTCCACACCAAATCCCCCAGTGTCGGTGGCAGCCTCCAGGAACCCGTGTGTGCGTTGTGCCTGGAACCGCTGCCCGGAGCAGGCGAAACTGCCAAACTGTGCGACAAGTGTTGCCGCAAGCATAACCTCAATGGTAAACGCAGCAAGGAGACGGCTGCAGTGATTACGCCTGCCAATCCTAACGCCGCCTACATTGAGAATCGCTGCAATCTGTGCAAGATGATACTGCCGCATGCCCAGAAACTGCAGGAGCATCTCGTCGAGCACACGTTCGCGGGCACCGAGCAGCGTGGCTTCAATTGCTACATCTGCTCCGCCGTCTTCACCGCCCCCGCCGGCCTCCTTGGCCACATAGCCGAGCATGGCGCCCGTCCCTACGACTGCAATCTGTGCCCCGAGAAGTTCTACTTCCGCGCCGAACTCGACCACCATCAGCGTGCCCACGAGCTGCGCGCTGCCTCAGCTCCAGCACCAGCACCAGCTCCAAATCTAGTTGTGGCTCGTCCAGCAACCAAGCTGGAGCAGCACAGCTCCACGGCCAGTTCTCCGGTTGCGCCCAGTCCCACTCATATCAAGCAGGAGCTCTTCGAGTCGGAGACTGCAGCATCGCCTTCACCCTCGATTGTAGAGCCACCTGCCCCAGAGGAGGAGGAATACATCGAGGTGGAGCAGGTGCCGCACGAGACACGCTCTGAACTGCTGGGAGCCCAGCACAATGAGCGCTCCAGCAGCAGCGCCTGA
- Protein Sequence
- MMALKMLYRGPSSRLENLIEKIQATKEITNNDMYSTHTSSSYSPSISDGTLTPNSTQLATPHPLAAGEDPSTESGQANGDAVNAEEERDREREREPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKINKEAKLTGPQSGAGGVGGGGGPGAGTKFDKLTGESIKSRGDGSYQCQFCDKSFPRLGYLKHHVQSHAEHLPFKCEYCAKLFKHKRSRDRHKKLHTNERNYKCPHCEAAFSRSDHLKIHMKTHDIQKPFQCSMCNRGYNTAAALTSHMQKHKKNAAILAAGGNPNALNYSPRSTGSASISSNGSLHKRRYALALASDSSPSRLEYPKRGRGNHVATTTPPTPPTPLLRCSYCPKLTEFSNLEQLNAHLQQVHEQRQPGGAGGGGGDGSLESGGAANGVGFQLSCEYCTMRFVNIAGLFQHMRATHLDRLSSPNSYYEHFNRLATAGTFSPRLALDLPKIKPDLSSPVAEKPEQDLPTDLSSNKRRSTPAPAAAAPAPHAPPGVFFCNQCNAGLPDFESFRNHLKSHIAEGMQQSCPHCGISLPEQSELERHVVAHFLISSAEYNCSAGSCGKSFAKADELQQHLQSDHVLTLLKCALCSEICETRMAMQLHLACAHSQETKLLRCSACMEVFRTDADFHVHVKTRHQALSAAAAAPGMAGVVAAPAAPVANPLQCMFCRVVCASELEMHFHLAAHARQFRCPSCPETFHVEFLLDRHMQSQHGGGNHKDAQGKEPASNNSPNMGSLYVNALLPPLAAAAAAAAAATNNNNNNSSLHIDYNVAFKGLFGGTAGAAAAGGGGGGGVGVTGGGNNPGSKFYSPLQVDTSGLKPQQTPHPALMYGLSQRYLMEMYAAKANSSPPAPDVPGQTIAAPTGGASSSSAGSYSCGMCERQDLRSEAELHSHRKLAHNLKTGVSLRCAYCSGNFKSRAELEQHMKSCHNSSGKHKCLICDEIFPSPAILAEHKLQHSKVGQSGKCAHCGQQLEHVAAFRAHLTEHGGDGNLPMACICCRQTLHSEFELSLHAKFHTKSPSVGGSLQEPVCALCLEPLPGAGETAKLCDKCCRKHNLNGKRSKETAAVITPANPNAAYIENRCNLCKMILPHAQKLQEHLVEHTFAGTEQRGFNCYICSAVFTAPAGLLGHIAEHGARPYDCNLCPEKFYFRAELDHHQRAHELRAASAPAPAPAPNLVVARPATKLEQHSSTASSPVAPSPTHIKQELFESETAASPSPSIVEPPAPEEEEYIEVEQVPHETRSELLGAQHNERSSSSA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -