Dput014364.1
Basic Information
- Insect
- Drosophila putrida
- Gene Symbol
- -
- Assembly
- GCA_037043535.1
- Location
- JBAMBI010000811.1:312348-314471[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 5 3.4e+02 2.0 0.1 1 8 244 251 244 261 0.81 2 9 2.2e-06 0.00015 22.0 3.7 1 23 336 359 336 359 0.95 3 9 0.00084 0.058 13.9 0.8 1 22 367 388 367 392 0.93 4 9 0.00026 0.018 15.5 6.4 1 23 395 418 395 418 0.98 5 9 1.2e-05 0.00085 19.7 3.1 1 23 424 446 424 446 0.96 6 9 2e-05 0.0014 19.0 1.3 1 23 452 474 452 474 0.98 7 9 0.0013 0.089 13.3 4.1 1 23 480 503 480 503 0.97 8 9 2.2e-05 0.0015 18.9 1.5 1 23 511 533 511 533 0.98 9 9 0.0034 0.23 12.0 4.8 1 23 539 563 539 563 0.92
Sequence Information
- Coding Sequence
- ATGGTCAAAAGTCGCAGATCACGGCGTAAAAGGTTGTTAAGATTTGAAAAGAATGATAAGATTCGACTTATAGACGCGGTAAGGCTAAGGCGCCTTCTCTGGGATTCGACGGAAAAAGAACATAAGGATCTAGTGGCCGTTAAGGAGGCGTGGGATTCAGTGGGCGCTGAGTTGGATAGAGAGCCAAATGATTGTAAGGTCGCTTGGCGCTCTTTGAGACAGAGCTTTCGCTATCATTCTAAGGTGgcaaagaaaagttttaacaTGGTCGAGGACGCTGATGAAGGCGAAGTCGATCCTTTGGAAACCCCCGACATTAAGTGGCCATTTGCTAGTCATATGTCattcttaaatgaaatgtCTAGGAATCAGAGATCAAACTCTGTAACTATGGATGAAACTGTATCATCCAATTCCGCAATAGAAGATTATACTGATATGGAGTACTTGGAAATAGATGATCAGGATGATGGCGATGATGTGGATATAAATTCagaagatgatgaagatgGCGGAACTACgaaagtttattatttgacAAAAACGTCAAAGGACAAAGATacaCATAGTCAATCAAAGATCGCTATTGATGTATTGTGTAGAACATGCACGCAGCCAACAGACGCTCGAACATCagaaaatctatttaaacCTCACAACTACAACCTACTACAAGATATCAAAGTCCTGACAGATCTGGAGCTAAAGCAAGATGAAGACTACTCGGACTTTATTTGTCATCATTGTCAGCAAATTGTGGAGATTGCTACTGAATTTCGTAGGGTCTGCACTGAGGCACAAACACACTTACTGATAAACGTACAAATGAAGGAGGAGGAGACGGAAGAAATAGATTCTCCAGAACGTAATGAGGAACGCTTGAAGGCGGTTGACATTTCGGATAATGAAAACTATTCCGAAGAAGTTGAGGTGCAGCCGTTACCCCGAAAATCCAAGTCATCAAGCATCAGAAAAAAACTGATAAAGaagccaaaaacaattaaataccaGTGTCACGAGTGTGGATTGACATTTAAAACCCGGGATCTGCTCAAAATGCATATGCATGAAATGCATGACATGCAGTTGCATACCAGATTTGTATGCAAGCATTGCGGACATGATTTCAAGTATTCCGAACCTCTTGTTGAACATTTGAAGAGCATAGGAGTACATTTTGGCTACGAGTGCGAGGAATGTGGTCAGAAGTTTCACAGTAGACATTTTCTTAAGAAGCATAAGAGACGAATCCATGGACTGGCTGACGAACACATTTGCCATATTTGTggtaaaaacttttcaactgGCTTCAATCTTCGCAATCATATTGTACGTCATGCTGGAACTCGTCCccacaaatgtaaattatgcAGTGCCGCATTTTCTACAACTGCTGAATTAAACAACCATCAGAGAATCCATGACAATGTGCGTCCATATCCGTGTCGTTATGGCTGTGGCAAAGCCTTCCGTCACTGCAGCAATCGCAGCACCCACGAAAGAGTACATATGGATGGCAGTTTGCGTCCATTTCAGTGTGAATATTGCGATAAAACGTTTGTAACCAAAGGTGACTGCAGAGCCCATCAAGCGGTTCATACGATGAGCCGTGATTTCAGCTGTGACATTTGCGAACAAAGCTTCAAACTACATAAACACTATCAGCAACACATTCTGACCAGAACCCACAAAAAGATGGAGGCTCTTGCTCTCGAAAATGCTGATGCCGTGGCCTAG
- Protein Sequence
- MVKSRRSRRKRLLRFEKNDKIRLIDAVRLRRLLWDSTEKEHKDLVAVKEAWDSVGAELDREPNDCKVAWRSLRQSFRYHSKVAKKSFNMVEDADEGEVDPLETPDIKWPFASHMSFLNEMSRNQRSNSVTMDETVSSNSAIEDYTDMEYLEIDDQDDGDDVDINSEDDEDGGTTKVYYLTKTSKDKDTHSQSKIAIDVLCRTCTQPTDARTSENLFKPHNYNLLQDIKVLTDLELKQDEDYSDFICHHCQQIVEIATEFRRVCTEAQTHLLINVQMKEEETEEIDSPERNEERLKAVDISDNENYSEEVEVQPLPRKSKSSSIRKKLIKKPKTIKYQCHECGLTFKTRDLLKMHMHEMHDMQLHTRFVCKHCGHDFKYSEPLVEHLKSIGVHFGYECEECGQKFHSRHFLKKHKRRIHGLADEHICHICGKNFSTGFNLRNHIVRHAGTRPHKCKLCSAAFSTTAELNNHQRIHDNVRPYPCRYGCGKAFRHCSNRSTHERVHMDGSLRPFQCEYCDKTFVTKGDCRAHQAVHTMSRDFSCDICEQSFKLHKHYQQHILTRTHKKMEALALENADAVA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00558131;
- 90% Identity
- -
- 80% Identity
- -