Dpse003624.1
Basic Information
- Insect
- Drosophila pseudotalamancana
- Gene Symbol
- -
- Assembly
- GCA_037075185.1
- Location
- JBAMCK010000275.1:587587-591780[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0016 0.11 13.0 0.4 2 23 278 300 277 300 0.94 2 9 0.013 0.92 10.1 4.6 2 23 442 464 442 464 0.91 3 9 0.0059 0.41 11.2 2.3 3 23 543 564 541 564 0.94 4 9 0.00032 0.023 15.2 0.7 2 23 795 817 794 817 0.96 5 9 0.0027 0.19 12.2 0.3 2 23 871 893 870 893 0.92 6 9 0.01 0.71 10.4 3.6 2 23 939 961 938 961 0.96 7 9 0.099 6.9 7.3 4.2 2 23 975 997 974 997 0.92 8 9 0.0027 0.19 12.3 0.5 3 23 1063 1084 1062 1084 0.96 9 9 0.046 3.2 8.4 0.6 1 23 1173 1195 1173 1195 0.99
Sequence Information
- Coding Sequence
- ATGGCCGCATCCATATATGCCACCCCACCGCCGGATCTGAGCAGCGAGGACACAGCGCTCTCCGATGTCTCCAACTCATCCACACTCAACACGAAtcgcggcggcggcagcagcagcaacaacagcaccaccaacaacacaaacagcagcagcaacaacaacaacagtcacaCATTGCAGACACATGAagccagagcagcagcagcagcagcagcagcagcggtggcagcaacCACATCAATGTCGCCTAGCCATGAGGCAGAGTCCAAGTCAAAGCAGTCGCCACTTGGAAGCAACACAAATGATGGCGAGGTCGAAGGTGACGGCGAgggcgacgtcgacggcgaaggcgagggcgagggcgaaGGTGAGGACGAAGGCGGGGCAGACGGCTCCTTGGATCAGACGGCGATGGCCGCAAtggccgctgcagcagcgaatGCAGCAGccatgcagctgcagcttttggAGGCGCTCAACGATGCGGCCAAGAAGCGACGCAAGCAGCACAATCCCAGTCGTCTGGAGGCACTCAATCTGAGTGGCGGCGAGACGGAGGAAGgcgcagccacagccatagccacagccacagccacagccggaGGGCAGCAACTGGAGCCAGCGGCGAATGCTGTCATCGACTACGAGGAGAAGCTGTCCAAGATGCTGCTGCCCAAGTCCATTGAGAAGCTGAAGGAGACTttcgagctgctgcagcagcagaagctgcagccCGAAGACATATCAGAAGCGGAggagaagcaacaacagcagcagctggaggagcagcagcagcagcagcagcagcagctgatcaATCCCTATCAGACCTACTGCAAGGAGTGCGGCGAAAACTTTGAGACGGAGTTCAAACTGAGCCTCCACATGTTGCAGgatcatcaacagcagcagcaacaactgcagcagcagcaacatcagcaacagcagcaacagttgccgtcAGATGAGCCGATGGACCTGCTCGGCTCCATCAAGGTGAAGCTGGAGCGCGCTGACAgtccgctgcagcagcagcagcaacaacaactgcagcagcagcagcagcagcagcagctggagctggccaATGGGcatgccaacagcaacaacaaggagcaCGAGCTTTGGCTGCAGGCCATGGcccagcagcatcagcagcagcagcaacagcaacagcagcagcagcaattgccgGGCATGGCGCCCGCCTTTGCATTTCCGCCGGAGGCAGCCGCGCTCGGCTGGCCGCTGCTGGGCATGCCCGGCTTCGCGGGCGTCGACGGACTCAATCGGCCGCCGCTGCGGATCTTCAATCCGGAGGCCTACTGCGAGCTGTGCAACAAGGAGTTCTGCAACAAATACTTTCTGAAGACCCACAAGGCCAACAAGCACGGCATCTTCGATCCCGTTGGGGATCTGGCCACGCCCGCcggcaacatcagcaacatcagcaatatcagtaacaacaacaataacaacaacaacagcatcagcagcagcaacaacaacagcggcagcggcagcagcgccgccGCTTCGATGTTCCCccagctgcaactgccacgCGAGCCGCCGCCACAGAAGCCGGAGCCACAGTTGACGCCGCCCGCTCCGCCGGCGGTGCACTGCGACATCTGCTCGAAGCGGTTCACCAACGTCTTTGCCATGCGCCGGCATCGCGCCAAGCAGCACGAacaggccacgcccaccgtcTCGCCGACGCCCCAGGTGCGTCGCGGCAGTCCCAGCGAGCAGCCGCCGACTGGCCAGGCAGCCGTGAAGCAGGAGCCCACGGCGGATGCCGCAGCTGGGCCGGAGGCGAAGCCGTACCAGCTGCCGGAGGGCTTCCGCGAGGACTTCAcgctggagcaggaggaggTGGCCTTTGCGCCGCCGCCGCGCAAGCTGCCcgcccagctgcagcagcaggcacgCGACGCCAGCTGCACGCCGGAGAAGCTGCGCCGGCTGGGCGTCCAGCTGCCGGAGGCCTTCTGCGAGCTGTGCTGCAAGGAGTACGCCAACCGTTACTTTCTGCGCACGCACAAGTGGAAGCGTCACGGGATCTTTGTGCCGCCCGAGGATCTGGGCAAGGAGGAGCAGCCGCTGATGCCCGCCGGCTGGCCATTCATGCCACTCAATCTGATGCTGGCCAAAGCGGCGGCCGccgagcaggagcagcagcccgACCAGGAGGAcgaccagcagcagccgccgccgccgctgctggaGGAGCAGCCCAGCAAGCGCATCAAGCTGGAGCCCTACGACGAGTCGAATCCGCCGGAAAAGCTGGACAGCTCGGTGATGGGCCTGCAGAACCTGCAAAAGCTGCAGTcgatgctgcagcagctcaacGACTTCAATGGCAAGCGTCCGCTTCCCTGCCACCTGTGCGGCCGGGAGCTGGAGCATCAGTACGCGCTCCGGGCGCATCTCATGACCGAGCACGCCGGCCAGCTGCTGCCCGAGGGACATCCCATGCtctaccagcagcagcagcagcagcaattgcagccattgcagcagcagcagcagctgccgctgaaGTTGTCGCCAGGCGGAGGATCGCCCAATGCGGCGACTCCGACGCCCGCTGCCAGTGAGCTGCGCTGCCAGACCTGCGAGCGGGACTTCTCCAGCGCACAGGAATTCAAGCAACATATCGCCGAGGTGCATCTGGGCCGGATGCCAGGCAGCAGTCCGCTCCGCGAGGGCTTCTATACGCCGGAGCGTGCGACGGTCCCTGCTGGAGGTGGGGGCGCAGCTGCTGGTGCGGCACGGGCCGCGTACACGATCACGCCGACGTCCAGCTACTGCGAGATCTGCAACAAGGAGCTGTGCAACAAGTACTTCATGAAGACCCACATGCAGCGGATGCACGGCATCGAGATCGAGAACGGCGCCCAGATCGGCGGCGTTGTCTGCAACATATGCAACAAGGAGCTCTGCAGCAAGTACTTCCTGCGCGTCCACAAGCACAACACCCACGGCATCATCGAGGACGGGGCTCCGCTGCCCCAGCCACGCGGCAGCTCCCAGAACGGACTCAAGGCcgaggcgcagcagcagcagcagcagcaacagcaacaacagcagcagcagcaacaacagcaacagcagcagcaacagttgctggaGCCGGAGATCAATTTGACGCCGCTCCGAGGCGACTCCAATGAGCTCTGTCCCCTGTGCGCCCGCCAGTTCCGCAGCTCCAAGTGGCTGCGCACGCATCTGATGAACGAGCACGGCGCCGCGGGCATCGAGAAGCTGCGCGAGTTGCAGCTCTCGCCGCTGCacgtggcaagtggcaacggGAGCGGCAGCAAGCCCAACAGTCCCACGCTCAAGATACCCAACGGGAGCACTCCGGGCGTCAGTCCGGCCAACAATCTCGCCCAGGCGCTGCAGaatgcgcagcagcagctgttcggCCAGATGCAGCTGCCAAAGGGaatgcctctgccgctgccgctgccgggCATGTTCGAGCAGACGCCGCGGTTCAAGGAGTACCAGTGCTCGCTCTGCCCCTTCACCACGCCCTACTATGCATTCCTCTTCATCCACGAGCGCTCCCACGCGCTGCTCAACAACGGCGGCACCGATCCGGAGTCTCAGCTGGGCGTCGAGGCGGAGCAGCCAAGGCACGACCGGGACAGATCCGTGCCGGGCAAGGCCAGGAGCAAGGCCAACAGGGAGCGGGTCGAGCGCCCAGATGTGGAGCACGTCGAGCCCACAAATCtaaccaccaccaacaacaacaacaacaacaacagcaactgtagCAGCCAAACGaaggcagccacgcccacaatgaTCGCCTCGCCAGGCACAGCTGCCGCCTCGCCCAAGGCCCGTTCGGCCACAGCGACACCGACGTTGACACCGACTCCCGGCAGGCGGAGCGCCAGCAACTCCAAGCCGGGCACTCCGAATGGCATCCAGGCGCAAAGGTCGGCGGCCACGTCGCCGTTCGAGATGTGCAGCGATCTGGCCAACGGGATGGGCAAGCCGGCCAGCTACGCGCAGCCGGACAAGGCCGAGGAGGCATACCAGATGCAGGCCTTCCACCTGGCCCCGGCCGATGGCGATGCCGAGGGCCTCTTTGCACCCGCCCTGGTCTACTTGCCGGTGCGGATGCGCGCCTCGGAGTCGACCACGTTGAGCTTCAGGCTGACGCCGGCCTAA
- Protein Sequence
- MAASIYATPPPDLSSEDTALSDVSNSSTLNTNRGGGSSSNNSTTNNTNSSSNNNNSHTLQTHEARAAAAAAAAAVAATTSMSPSHEAESKSKQSPLGSNTNDGEVEGDGEGDVDGEGEGEGEGEDEGGADGSLDQTAMAAMAAAAANAAAMQLQLLEALNDAAKKRRKQHNPSRLEALNLSGGETEEGAATAIATATATAGGQQLEPAANAVIDYEEKLSKMLLPKSIEKLKETFELLQQQKLQPEDISEAEEKQQQQQLEEQQQQQQQQLINPYQTYCKECGENFETEFKLSLHMLQDHQQQQQQLQQQQHQQQQQQLPSDEPMDLLGSIKVKLERADSPLQQQQQQQLQQQQQQQQLELANGHANSNNKEHELWLQAMAQQHQQQQQQQQQQQQLPGMAPAFAFPPEAAALGWPLLGMPGFAGVDGLNRPPLRIFNPEAYCELCNKEFCNKYFLKTHKANKHGIFDPVGDLATPAGNISNISNISNNNNNNNNSISSSNNNSGSGSSAAASMFPQLQLPREPPPQKPEPQLTPPAPPAVHCDICSKRFTNVFAMRRHRAKQHEQATPTVSPTPQVRRGSPSEQPPTGQAAVKQEPTADAAAGPEAKPYQLPEGFREDFTLEQEEVAFAPPPRKLPAQLQQQARDASCTPEKLRRLGVQLPEAFCELCCKEYANRYFLRTHKWKRHGIFVPPEDLGKEEQPLMPAGWPFMPLNLMLAKAAAAEQEQQPDQEDDQQQPPPPLLEEQPSKRIKLEPYDESNPPEKLDSSVMGLQNLQKLQSMLQQLNDFNGKRPLPCHLCGRELEHQYALRAHLMTEHAGQLLPEGHPMLYQQQQQQQLQPLQQQQQLPLKLSPGGGSPNAATPTPAASELRCQTCERDFSSAQEFKQHIAEVHLGRMPGSSPLREGFYTPERATVPAGGGGAAAGAARAAYTITPTSSYCEICNKELCNKYFMKTHMQRMHGIEIENGAQIGGVVCNICNKELCSKYFLRVHKHNTHGIIEDGAPLPQPRGSSQNGLKAEAQQQQQQQQQQQQQQQQQQQQQQQLLEPEINLTPLRGDSNELCPLCARQFRSSKWLRTHLMNEHGAAGIEKLRELQLSPLHVASGNGSGSKPNSPTLKIPNGSTPGVSPANNLAQALQNAQQQLFGQMQLPKGMPLPLPLPGMFEQTPRFKEYQCSLCPFTTPYYAFLFIHERSHALLNNGGTDPESQLGVEAEQPRHDRDRSVPGKARSKANRERVERPDVEHVEPTNLTTTNNNNNNNSNCSSQTKAATPTMIASPGTAAASPKARSATATPTLTPTPGRRSASNSKPGTPNGIQAQRSAATSPFEMCSDLANGMGKPASYAQPDKAEEAYQMQAFHLAPADGDAEGLFAPALVYLPVRMRASESTTLSFRLTPA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00502799;
- 90% Identity
- -
- 80% Identity
- -