Dpse007494.1
Basic Information
- Insect
- Drosophila pseudotalamancana
- Gene Symbol
- -
- Assembly
- GCA_037075185.1
- Location
- JBAMCK010000547.1:105359-109384[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.7 1.2e+02 3.4 6.9 2 23 355 377 354 377 0.96 2 16 0.007 0.49 10.9 1.6 2 23 420 441 419 441 0.94 3 16 5.6 3.9e+02 1.8 3.0 2 17 452 467 451 478 0.75 4 16 0.025 1.8 9.2 0.3 3 23 511 531 509 531 0.95 5 16 0.00047 0.033 14.6 0.3 1 23 539 562 539 562 0.98 6 16 0.021 1.5 9.4 1.0 2 23 567 588 566 588 0.97 7 16 0.00029 0.02 15.3 0.6 1 22 636 657 636 660 0.90 8 16 0.052 3.6 8.2 1.0 1 21 665 685 665 686 0.92 9 16 0.0042 0.29 11.7 0.5 1 23 705 730 705 730 0.97 10 16 0.095 6.6 7.4 3.7 2 23 746 768 745 768 0.93 11 16 0.0026 0.18 12.3 0.0 3 22 775 794 773 796 0.88 12 16 0.005 0.35 11.4 0.2 2 23 800 822 799 822 0.96 13 16 1.7e-05 0.0012 19.2 2.1 1 23 828 850 828 850 0.98 14 16 0.028 1.9 9.1 0.6 1 23 854 877 854 877 0.93 15 16 3.6e-05 0.0025 18.2 1.2 1 23 883 906 883 906 0.97 16 16 0.00033 0.023 15.1 0.9 1 23 910 938 910 938 0.89
Sequence Information
- Coding Sequence
- ATGTCGgaaaattcgaaaataaaCAACCAAAATGGGCCTAGCTGCCTGCATTGCAGTGTGCACAATTCAAAGCAACAATATCAGGAAATATTCGATGAAGTGGGCATCGAAATAGAACTCGCAGATCTGCTAGCCAAATACTTCCAAATTGTTGTCAAGCCCGATGCGCAAAAGTCGCAATTGCTGTGTCAAGAATGCGTCAATACGCTTATTCGCTTCTTTGACATAGACGAGCTGCAGCGGGAACAGGACGCAGCCAATGCTCTTAAGAAGGATGCTAACAACAAGCAGGCGCTTGCAACTTCGCACCCATCTgcgcctccagctgcagctaaaaAGGATGATGCGGCcgccaaaaagcaaacgccgccaaaagcagcagcagccggcaaaAACGCGCAAGTTTCAGCCAAGAAGTTGCCCACGCCTGTCAAATCAGAGAAGCCAACACAGATTGCAGCATCTGTTGCTCAAGTTACCGAACCAGAAACCCTGGCGGTACGCGTAACGAGAGCTCGAAATGTTGCTCCCAAACGTGTGCCGGTAAAAATTAAGGAGGTTGTGAAACCCACTGTTAAAGCGGGAGTTAAGAGTCGCGGCTCTAAAGATGCGGTGCCAGCAGATCAGGAGCATATAAGCGCGCTTATACGCGACATTCTCGACGATGAGGAAGCGCCGGAAGATGATAAATTTGCTGAGGCTGCAGCCACAGTGCGACAGCTTGAAAGCCAGTCGAGCAAAAGTAAACGTCAAATTGAGGTGGCGGAGGTGGTAGAGTGTCAGGATTTGGACGAAAACGAGAATAATGATGAGCTAGAGTTTTTGCTCGAGCACGATGaTGGCTCCTCCGATTCGGACGTGCAACACTTCAAGGTGGAGCGTAAGGTAAAGCGTGTCCCCTCTCAGTCACAGAATGAGAGCCAGAGCGAGGATGAATCGTTTAAAGTGGAGCCGTTTAATTTTGTTCTGATCAAAGAATCTGATAATATTGGTGATCTGCATGAATATTTGTCGACTGTGGTGAAGACCTGCTTTGAGACCTTGAAATTCGATTGGGCCACCGTCTGCCGGCATTGCTCACTGAAATGTACCAAGTACGAGACGTTCCTCAATCACATGCAGAAGCGGCATCAGCTGTCGGGCGATCGCTACAACTGTCCCATTGAAGGGTGTACGGCGGAGTTGCGTGGATTCAAATACTTGGCCATGCATTTGGTGGTGTTGCATGCCCCCGTGGCAGAAATACCTATCTACGGCAAGTGTCCCGAGTGCAACATGACCTTCTCCAATATATTGCAATACAACAAGCACTCCTGTGCGCATGTCATTAAGAAGCGTCGCGGCATACGCTTGTATTGCGAGATGTGCGGCTTGGAGTTTCCCTCCTGGAAACGCTTCAATTTCCATAACCAATTTCACTTGGAGCGTCACAGGCCGCGCGCCTGTTTTGTGTGCAACTTTGCGGACAACAACATTGATGAGCTCTTCCATCACTTGTACTACGCCCACGAACCGGAGGGCACGCTCTTCTGTGATCTTTGTGATCGCAATTTTCGAGACGCCGCCGTCTTTATGGAGCACAATAAATCGCATGCCAATGTCAGCAGCACGACCTACAGCTGCTCCGATTGTAGTGCCAATTTCGAGACTCGTGGTCGCCTCAACGGTCATATGCGCTCTGTCCATGGCAGCGTCATTAGTTGCGAGCTGTGCAATCGCGAGTTCGCCACGGAGGCTACCCACAACCTGCATATGAAgacacatttaattattgagCGGCAGGTGCACGTCTGCAATAATTGTGGCTTGCTTAGCGAAAATAACCAGAAACTCTTGCCTCATGTGGAGAACGAGGATTCGCCCTGCTTTGGCATGGATATCTATGCAGAGCTGTTGCGCAATGcttatgtatgtgaatattgCTCCTCGTATTTCAAGCAGAAAAGCGATCTGCGCGCTCATCGCGATTCAGGGGTGCATAAAGATGGTTTCTTCTTTTGCCAGCCTTGTGGCAAGGAGTTTGCAGACATGAAACTTTATCGTCATCATTTGCGAAACTTTCAGCAACAGCGAACGGATGTGGCGCATCGCAAGCTAGAGATTTGTCTGTACTACATGTGTGACTATGAGGACTGCACTGAGGCCTATATTAACTGGAACTCTTTGTACACCCATAAGAGACGTTCACACGATAGCATCGAGAAGCAGGAGCCGCAGCCCAAAGAAAATGAATGGATCTGTCAATTCTGTCACAAGCAGTGTCGATCCAAAATGTCGCTCTCCGTGCATGTGGCACGCAGTCACAACAACAACAATGTAATTTGCCCGATCTGCAAGGCCTCCTATAAGGACAACGATGCCTTGGCCAAGCATAACGCCTATTGGCATGAACCGATTGAGTGCGAGTTGTGCCTGAAGGTGGTCAAAAATCGTCGCAACTTCGACACGCACATGAATGTGGTTCACTCGAACAACAAACGCTATTCGTGCAGTGTATGCCAGAAGGGCTTCTATCATAAAAGTGAAATGGAGGCGCATCAGCGGCTCCATACCCAATCATATAGCTGCGAACAGTGCAGTTTCATAACGAGGAACAAGAAATCGTTGTCGGTACATGTGCTGGGACAGCATTACAAACGCTTCGCCTTCGAGTGCAAGTCGTGCGACAAGCGCTTTGGACGTCGCCAGGGACTGTCGAATCATATGCAGCGTGTGCATGGCTCCAGGTACACGTGTCGAGATTTCTTCGATGGCGGCTGCAACAAATCCTTCAGCTCGACGAGACAACTGAATATGCATGTGCGGAAGGTCCACAACGGCAGCATTTACTTAGAAGACGATCCATCCAAGACGGAGGATGGCGAAGAACTCGACGAGGAGAATGTTATTGCCGACGGTCCATCTACATCGAAGAGACGCTGCATACGCATCAATGCGAACACACAAATCGAGTTTATTGGTGATTCGGGTGTGGCCGATGAAAATGAGAGTCTCACCGGCTCCGAGATCTTTGAGGAGTTTCAGGACATTAAGGAGGTCGACGAATCTCCcccaaaaaagaaagcaaggCGAAGTTAA
- Protein Sequence
- MSENSKINNQNGPSCLHCSVHNSKQQYQEIFDEVGIEIELADLLAKYFQIVVKPDAQKSQLLCQECVNTLIRFFDIDELQREQDAANALKKDANNKQALATSHPSAPPAAAKKDDAAAKKQTPPKAAAAGKNAQVSAKKLPTPVKSEKPTQIAASVAQVTEPETLAVRVTRARNVAPKRVPVKIKEVVKPTVKAGVKSRGSKDAVPADQEHISALIRDILDDEEAPEDDKFAEAAATVRQLESQSSKSKRQIEVAEVVECQDLDENENNDELEFLLEHDDGSSDSDVQHFKVERKVKRVPSQSQNESQSEDESFKVEPFNFVLIKESDNIGDLHEYLSTVVKTCFETLKFDWATVCRHCSLKCTKYETFLNHMQKRHQLSGDRYNCPIEGCTAELRGFKYLAMHLVVLHAPVAEIPIYGKCPECNMTFSNILQYNKHSCAHVIKKRRGIRLYCEMCGLEFPSWKRFNFHNQFHLERHRPRACFVCNFADNNIDELFHHLYYAHEPEGTLFCDLCDRNFRDAAVFMEHNKSHANVSSTTYSCSDCSANFETRGRLNGHMRSVHGSVISCELCNREFATEATHNLHMKTHLIIERQVHVCNNCGLLSENNQKLLPHVENEDSPCFGMDIYAELLRNAYVCEYCSSYFKQKSDLRAHRDSGVHKDGFFFCQPCGKEFADMKLYRHHLRNFQQQRTDVAHRKLEICLYYMCDYEDCTEAYINWNSLYTHKRRSHDSIEKQEPQPKENEWICQFCHKQCRSKMSLSVHVARSHNNNNVICPICKASYKDNDALAKHNAYWHEPIECELCLKVVKNRRNFDTHMNVVHSNNKRYSCSVCQKGFYHKSEMEAHQRLHTQSYSCEQCSFITRNKKSLSVHVLGQHYKRFAFECKSCDKRFGRRQGLSNHMQRVHGSRYTCRDFFDGGCNKSFSSTRQLNMHVRKVHNGSIYLEDDPSKTEDGEELDEENVIADGPSTSKRRCIRINANTQIEFIGDSGVADENESLTGSEIFEEFQDIKEVDESPPKKKARRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00512900;
- 90% Identity
- -
- 80% Identity
- -