Basic Information

Insect: Drosophila pseudotakahashii
Gene Symbol: -
Assembly: GCA_035046095.1
Location: JAWNOE010000167.1:1559858-1561962[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 7.7 6.5e+02 1.4 0.5 2 11 165 174 165 178 0.88

2 8 1.5e-06 0.00013 22.6 0.8 1 23 385 407 385 407 0.98

3 8 1.9e-05 0.0016 19.0 0.7 1 23 413 436 413 436 0.98

4 8 0.096 8.1 7.4 0.4 1 23 442 465 442 465 0.90

5 8 0.00018 0.015 16.0 3.6 1 23 490 512 490 512 0.98

6 8 6.3e-06 0.00053 20.6 3.1 1 23 518 540 518 540 0.99

7 8 0.008 0.67 10.8 0.4 2 23 546 567 545 567 0.96

8 8 0.014 1.2 10.1 1.6 3 21 575 593 573 597 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	7.7	6.5e+02	1.4	0.5	2	11	165	174	165	178	0.88
2	8	1.5e-06	0.00013	22.6	0.8	1	23	385	407	385	407	0.98
3	8	1.9e-05	0.0016	19.0	0.7	1	23	413	436	413	436	0.98
4	8	0.096	8.1	7.4	0.4	1	23	442	465	442	465	0.90
5	8	0.00018	0.015	16.0	3.6	1	23	490	512	490	512	0.98
6	8	6.3e-06	0.00053	20.6	3.1	1	23	518	540	518	540	0.99
7	8	0.008	0.67	10.8	0.4	2	23	546	567	545	567	0.96
8	8	0.014	1.2	10.1	1.6	3	21	575	593	573	597	0.89

Sequence Information

Coding Sequence: atgaGATATTGTGCGGTGCCGAATTGCCAGAGTCTCTCCAAAAGGGATGcggatcagcagcagcaggtgggCTTATTCCGGTTCCCCAAGTGCCCGAGAAAATACAGACGTTGGCTCGCATTCTGTGGGCTTACAGCGGACACCCTGAAGGCGAAGGATCCCTGCATTTGCATAGAACACTTCAAGGACGAGGATATCGTGGGAGCCCTAAAGTTCGAGATGGGCCTGGCCAAAAGAAGAACCTTGCGACCGGGTGCGGTTCCCAGCATAAACAGAGACAAGGAAAGTGCTTCGGAAAGAGCCCGTAAGGAAAGGACACAGCGGCGCAAGAACCAGAAACTGGTTGCCAAACTCCTGGCGGAAAGTGAGGAAAACACGACTACTCCAGCGGTCTCTGCTTTCGCTAGTCCGCGGCGGGATGTGGATTTATCAGAGGTTATATCAATGGATTTAGATCCGCTTATGGGCAAGGATGAACCAAAGGAACAGGAAAAGTGCCGCATCTGCTACAAGGACTTCTCCGTGGACTCCAGTGCCAAGGATCTCTTAGACCAGGCCAACAGTGTCCTGCTCTTCCACATTGAGGTCATTAGCGGTGTTTGGATCAGCCTGAAACCAGACGAACCCCGGCTCATGTGCCCTGCCTGTTATCTATCCCTTAATCTGGCCATCGATTTCCGGGAGATGTGCATCAACACGGAGCTCAGGATCAGCCAAACCAAGGCCTTAGCTGAAGCGGAACCAGATAGAACGGAGGTCTATGCTGTAAATGACGATTCAGTTACTTTAGAGCCTGATTTCGATTCAGAGTACACTAATATAGAAGAGATAGAAGATGCAGATGAAGAGCCTGCGGAAGATGATGCCACATCGGAGGACCAATTAAGTCAGGAGGCAGCCGTGGAATCCCCTGACCCCACCACACAGGATCCACTTAGTGTGTCGCTGGGGGCCAAGATTTTCAAGGAACTGATAGACCAATACACGGGTCACGAAAAAAGTAGGCCAAAAAAAGAGGAGCCAAGTGTTAGAAAGCCCAGTAATATAAATCCGGCAGTTAGTGAACAAAAAGCAAAGCGCAGGGCCAAACCGAAGACGAAAGAGGAGAGAAACCTCATACGACGTGCCCAGCTGCGGGAAAGGGCGCCGAACTTTGTGTGCGACCAGTGCGGCCAGGCCTTTCGCATGGCCCACAACCTGCGGATACACATGCTCCGGCACAGTCGCACCAAGAATTACCAGTGCAGCGAGTGTCCGAAGACTTTCTACGACGCCTACATGCGCAACATGCACATCCGCATCCGTCATCGCGGGGAATCGCCCTTCTCCTGCCGTTTCTGCAGCGAAACGTTTGCCTATGCGGGAGCTCGCCAAAAGCATGAAAGTGAGATCCACAATGCTGCTCCCCGTTTGATTGTAAAGCGAATCAATCCCAAGCCCACGGCCAAGCCACGAGAGGATGTGCGTTACCAGTGCAAGCTGTGCCACAAACATTACGCCTCCAAGTATGCGCTGAGCTGGCACGTAAAGGCGCACACCGAAGCAAACACCTTCAAGTGCCAGCAGTGCAGCAAGTGCTACTCGGATCCCAACGGGCTAAAGCGCCACGTGATGACCCACGAGAAGAGGCCGCTGCAATGCGATGTTTGCCTGAAAGGATTCTATCAGCGCACACGACTGCGGGAGCACGAGCTCATCCACACCGGAGAGCGTCCCTATTGGTGCGAGGTCTGCAACGTGCACTTCCGCTACAAGTACAACATGAAGACTCATGCCAGCAGTAAAATGCATCAGGAAAACGTTCGTAAAACTGGTGAAGAACAATTAGTTGAAGACGAATGA
Protein Sequence: MRYCAVPNCQSLSKRDADQQQQVGLFRFPKCPRKYRRWLAFCGLTADTLKAKDPCICIEHFKDEDIVGALKFEMGLAKRRTLRPGAVPSINRDKESASERARKERTQRRKNQKLVAKLLAESEENTTTPAVSAFASPRRDVDLSEVISMDLDPLMGKDEPKEQEKCRICYKDFSVDSSAKDLLDQANSVLLFHIEVISGVWISLKPDEPRLMCPACYLSLNLAIDFREMCINTELRISQTKALAEAEPDRTEVYAVNDDSVTLEPDFDSEYTNIEEIEDADEEPAEDDATSEDQLSQEAAVESPDPTTQDPLSVSLGAKIFKELIDQYTGHEKSRPKKEEPSVRKPSNINPAVSEQKAKRRAKPKTKEERNLIRRAQLRERAPNFVCDQCGQAFRMAHNLRIHMLRHSRTKNYQCSECPKTFYDAYMRNMHIRIRHRGESPFSCRFCSETFAYAGARQKHESEIHNAAPRLIVKRINPKPTAKPREDVRYQCKLCHKHYASKYALSWHVKAHTEANTFKCQQCSKCYSDPNGLKRHVMTHEKRPLQCDVCLKGFYQRTRLREHELIHTGERPYWCEVCNVHFRYKYNMKTHASSKMHQENVRKTGEEQLVEDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00581569; iTF_00537024; iTF_00536805;
90% Identity: iTF_00581569;
80% Identity: iTF_00581569;