Dpse012697.1
Basic Information
- Insect
- Drosophila pseudotakahashii
- Gene Symbol
- -
- Assembly
- GCA_035046095.1
- Location
- JAWNOE010000189.1:4652757-4654247[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.37 31 5.6 1.3 1 23 190 212 190 212 0.96 2 9 0.00021 0.018 15.8 0.4 1 23 218 242 218 242 0.94 3 9 0.00028 0.024 15.4 4.8 1 23 249 274 249 274 0.96 4 9 9.4e-05 0.0079 16.9 2.0 1 23 283 305 283 305 0.97 5 9 8.9e-05 0.0075 17.0 0.4 1 23 313 337 313 337 0.95 6 9 0.001 0.087 13.6 1.1 1 23 343 365 343 365 0.96 7 9 1.2e-05 0.001 19.7 1.8 2 23 372 394 371 394 0.96 8 9 0.0004 0.034 14.9 3.4 1 23 400 422 400 422 0.97 9 9 1.8e-07 1.5e-05 25.5 0.3 1 23 428 450 428 450 0.98
Sequence Information
- Coding Sequence
- ATGGGTCACCTGGACAAGTGCCGCGTGTGCTCCTGCGGAGTGGCCAGCGACGACGAGGCCTACAATCTGCTGCAACTGCCGCATTTGGCCGTCAAGTTCTCTGAATGCACCAATTTGGTTGTGGATCCCGATGACCAGGATATTCTGCCCAACGAAATTTGTTCCGAATGTTACGAGCTACTGGAGAAGTTCCACTCCTTCCGAGCACTTTGCATTATCGCCGATGGAAAATGGCGCACCAAAAATCTGTGTACCAGAAAGAAAATAGATCGGAGAAAAGCTGTGCACAGGGTGGATGATGACGACGAGGAACCTGAGCTTCCAGAGGAATATGAAGAGGACCCGGAGCATCCGGAGGCCTATGAGGAGGAGCCAGAGGAGATGGAGGAAGAGCAGGAGATCCAACAGCTTTATGAAGCTCCAGAATTGATTATTTGCGACAAATCCTTGAGTAccgaaaaaatcgaaaagacACCTCCCAAATTGGATAGAAAAACCACCCCCAAAAAAGTTCAGAAGAAATCGATACCGCCAAAGAAAGCTAAAGAAGAAGATTTGCATATTATATTCAAGTGCGATATCTGCTCTGATGAATTTCGTGAGGAACGACGCCTGTTCATGCACAAGAAGGAGCACGAGGGCCACATGCTGTACCACTGTACTGAGCCCGGGTGCGATGAGGCCTTCAATCGCTACGAGAATCTGAGGCAGCACGAACTTTGGCACTCGGAGGAGGGTGAGCGGTTCGTATGCGAGGAGGAGGGATGCCACAAGATGTACCGGCACAAGGCTTCGCTCAAACATCACCAGAGCAAGGCCCATGATATTGGCAAGCCCTTAAAGACCCACATGTGTGAATTCTGCGGCCGGGTGTTTAAGAACGGCTCCGCCTTGAGTCAACATCGGTTTACGCACGACGATCAAATGGAATTGCCATATGCCTGTGAAATACCAGACTGCACTTTGCGATTCTACAGCAAGGAGAAGCTCAAGATCCACATGATGCGACATCAGGGTATTAAGAACTATAGCTGCCCCTATTGTGGGCTCAAGAAGACTACAAAGAATGAACTACGACTGCACATCAATTTCCACACGCTGGAGAGGACCTGGTCCTGCAAGGAGTGCCCCAAAGTTTGCAACAGCTCGACGAGTCTCAAGAAGCATGTTCGTTCGGTTCACGAAAAGGCACGCGATTACGCTTGCCACTATTGTGAGAAGAGATTTGCCACCTCGGACACCCGAAAATATCACGAGATGACTCACACGGGAGAGAAAAACTTCGAGTGTCGTGTGTGCGGCAAGAGGTTTATACAACCATCTGCCCTGCGTACCCATCTCAAAATCCACGAATTGGAGCAGGATCAGCAGACAACTTTTACTATGGTGCAAGTGACTACCATTAATTAA
- Protein Sequence
- MGHLDKCRVCSCGVASDDEAYNLLQLPHLAVKFSECTNLVVDPDDQDILPNEICSECYELLEKFHSFRALCIIADGKWRTKNLCTRKKIDRRKAVHRVDDDDEEPELPEEYEEDPEHPEAYEEEPEEMEEEQEIQQLYEAPELIICDKSLSTEKIEKTPPKLDRKTTPKKVQKKSIPPKKAKEEDLHIIFKCDICSDEFREERRLFMHKKEHEGHMLYHCTEPGCDEAFNRYENLRQHELWHSEEGERFVCEEEGCHKMYRHKASLKHHQSKAHDIGKPLKTHMCEFCGRVFKNGSALSQHRFTHDDQMELPYACEIPDCTLRFYSKEKLKIHMMRHQGIKNYSCPYCGLKKTTKNELRLHINFHTLERTWSCKECPKVCNSSTSLKKHVRSVHEKARDYACHYCEKRFATSDTRKYHEMTHTGEKNFECRVCGKRFIQPSALRTHLKIHELEQDQQTTFTMVQVTTIN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00605800;
- 90% Identity
- iTF_00578756;
- 80% Identity
- -