Basic Information

Insect: Drosophila pseudotakahashii
Gene Symbol: -
Assembly: GCA_035046095.1
Location: JAWNOE010000198.1:1824836-1827168[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 7 0.0033 0.28 12.0 0.8 1 23 177 199 177 199 0.98

2 7 0.0054 0.46 11.4 4.5 1 23 502 524 502 524 0.96

3 7 6.5e-06 0.00055 20.5 2.5 1 23 530 552 530 552 0.98

4 7 0.00033 0.028 15.2 1.4 1 19 558 576 558 581 0.95

5 7 2.3e-06 0.00019 22.0 2.9 1 23 587 609 587 609 0.97

6 7 3.6e-06 0.00031 21.3 1.8 1 23 615 637 615 637 0.98

7 7 1.9e-06 0.00016 22.3 0.7 1 23 643 665 643 665 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	7	0.0033	0.28	12.0	0.8	1	23	177	199	177	199	0.98
2	7	0.0054	0.46	11.4	4.5	1	23	502	524	502	524	0.96
3	7	6.5e-06	0.00055	20.5	2.5	1	23	530	552	530	552	0.98
4	7	0.00033	0.028	15.2	1.4	1	19	558	576	558	581	0.95
5	7	2.3e-06	0.00019	22.0	2.9	1	23	587	609	587	609	0.97
6	7	3.6e-06	0.00031	21.3	1.8	1	23	615	637	615	637	0.98
7	7	1.9e-06	0.00016	22.3	0.7	1	23	643	665	643	665	0.98

Sequence Information

Coding Sequence: ATGGAGCGCAAGGAAGTGGACACCCAACAGTTCATCGACCATACGCTGCTGGCCACGGAGCtgtataataacaataataatcaCTTTATAATGGATCTAATAGACCACACGAATCGCACGAATCCCAGTTCGGGCAATTCGGAAAACGGAGTGGGTTACGTGGAGAAGGAATCGCTGACACCGGAACTGAATTTCCATAACACCATCTTTCAATTTGTGAACAAATCGTCTCCGGAAAACGATGTTGTACCACATCCCCATCATCAGCCGGTGGCCCAGCCCACTTTTCCCGCCCTGGCCATTGAGCCCACCGTTCCCATCGATGTGTCCACGGGCCTCGTCCACGAGGACGAGGATCTCCTGTATGCCCACAACAATGCATCCTGCAATGCTAATGCCAGGAAAGTCTTGCCCCACAAGAAACGAATCTCGCGGAAACTCAAGGGCAACATAGACGCCGACCTCGACCATGTCCACCACCATCATGTGCACAAGCATGTCCAGGATGTAGCTCCCAATCCAAATCTCTACAGTTGCGAAATCTGCGGCTATGCAGTCCACACCCAATTGGATTTCTTCGCCCACCTCAAGCAGCATTACGAACCCACCGTCCTGGAGCAACGCCTGGTGGTTCAGgatccccagcagcagcagcaaaaggaGCCATTGGATATGTGCGGGCTAACTGCCCAGGATAAGCTGCAACAGGAGCAGGCCAAACTGGACCAGGTTTTTCACGATGTCCAGCTGAACTTTGAGAACTTCCACAACATCAGTCACCATGTCGACGACGACGTTGCCAATGTGGGTGTGAGCATGGACAAACTAAGTCCCGTGGTGGCCAACACCAACAGCACTCCGAATTCGGTGCCCGTAGTCGACGATGTCGAGTTCAGCGATACGGAGGACATGCTCGAGGGTATTCGCAATGTAGTGGACAAGGTTTCGATAGAAGACACCTGCGATGAGCTGGTGGATCTGGAACTAACCTCCAGCGGAATGACGGCTCCTTGGTTCAATAACAACTTCAGGGACATTACTTTTCCGGCTCTTCTGCTGCCCGGCGAACCGCCGCCAGCTTCTGGAGAACAGGCTACTACTCCACTGCTGAAAGATAATCCCATCGAAAGCGAGCACTTGGCTTTGGATTTCCTCAGTCCCGAAAAGAGAGAACCTGTGGGGGAACCAAAGATAGAGAAATCTCTGTCAAAAGTCAGCGAATCAAATGAGCAAACCCTGTTGGTTGCGCCACCAGCCTGCCAAGCACCACCGCCTCTCTCTGTTCCACCGCCCAACTCCTCCATCGAGCAACTGCAAAGGTCTCCCCTAGTGATCAACGATGCCTTCAAACTAGAAGAGGATGACATGACAGACAGCCGTCCTGCTTCGCCCTTTGAGGAAGCAGATGCCGGAGATCCTGAAGCGGACAACGAAAGCTTTGCGATGGAGGACTTGGATACCAGTTTATCCGAGGAGACGACGCAAAGTAAGGCGAGGAGGAAACACTTCTGCGACAAGTGCAACAGGGATTTCAACTCGTACAATGCACTCAAGTACCATCAGTACACGCACAACCAGCAGAGATCCCACAAGTGCGAGAGCTGCGAGAGATCCTTCTACACCCAAAGTGCCCTGAAAGCGCACGAAAGGACACATTCCGGCGAAAAACCGTTTCAATGCGATAAGTGCGACTTCAAATTCCGGCAATGGGGCGACCTAAAGTACCACGATATATCGCGCCACAGCGACGTCAAAGCGCATATGTGCGAATTTTGCGGAAAGAGCTTTTCCAGGAGATACTCTCTGGTTTTGCACCGCCGAATTCACACCAGGGAACTGAACTACGCTTGCCAGCACTGCGACAAAACCTTTCGGGCCAGCTCATACCTGCTCAGTCACATTAAAGTGCACACTGGGGAGCGACCGTACGAGTGCTCCATCTGCGAGAAGAAATTCCGAGTCTCAGGGGATCTCAAGCGACATTCACGGATCCACGATCCCGGCAGAACGAATCAAACACCTGCGGAAAAggtcaaaaagaagaaggcaGTTGCTAATGACAAGGACGACAAGGTGGCAACAGCCAACATCCAAAACAATAAGTCTGACGCCATGTGCGACCAAACTGGGCAGAAAATCCTGGGCTTATAG
Protein Sequence: MERKEVDTQQFIDHTLLATELYNNNNNHFIMDLIDHTNRTNPSSGNSENGVGYVEKESLTPELNFHNTIFQFVNKSSPENDVVPHPHHQPVAQPTFPALAIEPTVPIDVSTGLVHEDEDLLYAHNNASCNANARKVLPHKKRISRKLKGNIDADLDHVHHHHVHKHVQDVAPNPNLYSCEICGYAVHTQLDFFAHLKQHYEPTVLEQRLVVQDPQQQQQKEPLDMCGLTAQDKLQQEQAKLDQVFHDVQLNFENFHNISHHVDDDVANVGVSMDKLSPVVANTNSTPNSVPVVDDVEFSDTEDMLEGIRNVVDKVSIEDTCDELVDLELTSSGMTAPWFNNNFRDITFPALLLPGEPPPASGEQATTPLLKDNPIESEHLALDFLSPEKREPVGEPKIEKSLSKVSESNEQTLLVAPPACQAPPPLSVPPPNSSIEQLQRSPLVINDAFKLEEDDMTDSRPASPFEEADAGDPEADNESFAMEDLDTSLSEETTQSKARRKHFCDKCNRDFNSYNALKYHQYTHNQQRSHKCESCERSFYTQSALKAHERTHSGEKPFQCDKCDFKFRQWGDLKYHDISRHSDVKAHMCEFCGKSFSRRYSLVLHRRIHTRELNYACQHCDKTFRASSYLLSHIKVHTGERPYECSICEKKFRVSGDLKRHSRIHDPGRTNQTPAEKVKKKKAVANDKDDKVATANIQNNKSDAMCDQTGQKILGL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00515737;
90% Identity: iTF_00605770;
80% Identity: -